data_A1DKA # _chem_comp.id A1DKA _chem_comp.name "tert-butyl [(2S,3R)-3-hydroxy-4-(3-{[4-(hydroxycarbamoyl)phenyl]methyl}-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]decan-8-yl)-1-phenylbutan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H45 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-06-16 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 643.772 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DKA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 36KL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DKA C11 C1 C 0 1 N N N N N N 19.284 4.599 -27.013 -5.003 0.375 -2.644 C11 A1DKA 1 A1DKA C13 C2 C 0 1 N N N N N N 21.760 5.321 -27.456 -4.565 2.386 -1.047 C13 A1DKA 2 A1DKA C15 C3 C 0 1 N N N N N N 21.411 7.016 -29.011 -2.283 2.116 -0.743 C15 A1DKA 3 A1DKA C16 C4 C 0 1 N N N N N N 20.007 6.324 -28.606 -2.804 1.029 -1.651 C16 A1DKA 4 A1DKA C17 C5 C 0 1 N N N N N N 21.565 8.434 -28.786 -0.983 2.693 -1.294 C17 A1DKA 5 A1DKA C18 C6 C 0 1 N N N N N N 20.411 9.291 -29.329 0.106 1.617 -1.255 C18 A1DKA 6 A1DKA C01 C7 C 0 1 Y N N N N N 19.256 4.984 -25.536 -5.560 -0.747 -1.806 C01 A1DKA 7 A1DKA C02 C8 C 0 1 Y N N N N N 19.491 6.276 -25.076 -6.754 -0.573 -1.128 C02 A1DKA 8 A1DKA C03 C9 C 0 1 Y N N N N N 19.459 6.520 -23.715 -7.269 -1.596 -0.359 C03 A1DKA 9 A1DKA C04 C10 C 0 1 Y N N N N N 19.204 5.476 -22.824 -6.584 -2.808 -0.266 C04 A1DKA 10 A1DKA C05 C11 C 0 1 Y N N N N N 18.983 4.199 -23.315 -5.380 -2.977 -0.953 C05 A1DKA 11 A1DKA C06 C12 C 0 1 Y N N N N N 19.017 3.947 -24.662 -4.879 -1.948 -1.723 C06 A1DKA 12 A1DKA C07 C13 C 0 1 N N N N N N 19.172 5.728 -21.310 -7.130 -3.908 0.556 C07 A1DKA 13 A1DKA C20 C14 C 0 1 N N N N N N 19.909 7.716 -31.038 -0.944 0.534 0.644 C20 A1DKA 14 A1DKA C21 C15 C 0 1 N N N N N N 21.053 6.842 -30.447 -2.067 1.574 0.667 C21 A1DKA 15 A1DKA C22 C16 C 0 1 Y N N N N N 23.870 6.469 -27.894 -3.431 3.759 0.521 C22 A1DKA 16 A1DKA C24 C17 C 0 1 N N N N N N 19.174 9.738 -31.150 1.421 0.227 0.228 C24 A1DKA 17 A1DKA C25 C18 C 0 1 N N R N N N 19.337 11.288 -31.201 2.729 1.019 0.169 C25 A1DKA 18 A1DKA C26 C19 C 0 1 N N S N N N 18.066 12.016 -31.660 3.913 0.050 0.174 C26 A1DKA 19 A1DKA C29 C20 C 0 1 N N N N N N 16.929 11.790 -30.659 3.954 -0.700 1.506 C29 A1DKA 20 A1DKA C30 C21 C 0 1 Y N N N N N 15.806 12.823 -30.865 5.043 -1.740 1.464 C30 A1DKA 21 A1DKA C31 C22 C 0 1 Y N N N N N 14.673 12.504 -31.589 6.324 -1.417 1.872 C31 A1DKA 22 A1DKA C32 C23 C 0 1 Y N N N N N 13.683 13.462 -31.747 7.323 -2.372 1.833 C32 A1DKA 23 A1DKA C33 C24 C 0 1 Y N N N N N 13.825 14.722 -31.196 7.041 -3.649 1.388 C33 A1DKA 24 A1DKA C34 C25 C 0 1 Y N N N N N 14.962 15.027 -30.475 5.760 -3.973 0.981 C34 A1DKA 25 A1DKA C35 C26 C 0 1 Y N N N N N 15.957 14.081 -30.314 4.760 -3.020 1.024 C35 A1DKA 26 A1DKA C36 C27 C 0 1 Y N N N N N 24.551 5.666 -26.966 -2.328 4.403 1.068 C36 A1DKA 27 A1DKA C37 C28 C 0 1 Y N N N N N 25.929 5.684 -26.895 -2.426 5.006 2.306 C37 A1DKA 28 A1DKA C38 C29 C 0 1 Y N N N N N 26.677 6.500 -27.734 -3.621 4.970 3.002 C38 A1DKA 29 A1DKA C39 C30 C 0 1 Y N N N N N 26.025 7.298 -28.659 -4.721 4.330 2.460 C39 A1DKA 30 A1DKA C40 C31 C 0 1 Y N N N N N 24.637 7.285 -28.743 -4.629 3.724 1.222 C40 A1DKA 31 A1DKA C41 C32 C 0 1 N N N N N N 17.230 12.429 -34.045 6.243 0.193 -0.525 C41 A1DKA 32 A1DKA C44 C33 C 0 1 N N N N N N 16.160 12.700 -36.237 8.515 0.165 -1.255 C44 A1DKA 33 A1DKA C45 C34 C 0 1 N N N N N N 15.126 13.747 -35.751 8.143 -0.347 -2.648 C45 A1DKA 34 A1DKA C46 C35 C 0 1 N N N N N N 17.350 13.364 -36.950 8.872 -1.019 -0.355 C46 A1DKA 35 A1DKA C47 C36 C 0 1 N N N N N N 15.464 11.796 -37.267 9.717 1.105 -1.362 C47 A1DKA 36 A1DKA N09 N1 N 0 1 N N N N N N 19.005 4.629 -20.349 -6.466 -5.078 0.644 N09 A1DKA 37 A1DKA N12 N2 N 0 1 N N N N N N 20.250 5.442 -27.703 -4.130 1.214 -1.819 N12 A1DKA 38 A1DKA N14 N3 N 0 1 N N N N N N 22.382 6.417 -27.937 -3.336 3.153 -0.734 N14 A1DKA 39 A1DKA N19 N4 N 0 1 N N N N N N 20.134 9.107 -30.736 0.284 1.152 0.126 N19 A1DKA 40 A1DKA N28 N5 N 0 1 N N N N N N 17.634 11.523 -32.956 5.159 0.800 -0.003 N28 A1DKA 41 A1DKA O08 O1 O 0 1 N N N N N N 19.301 6.836 -20.924 -8.178 -3.758 1.154 O08 A1DKA 42 A1DKA O10 O2 O 0 1 N N N N N N 18.974 4.840 -18.959 -6.989 -6.132 1.432 O10 A1DKA 43 A1DKA O23 O3 O 0 1 N N N N N N 18.870 6.542 -28.814 -2.143 0.140 -2.146 O23 A1DKA 44 A1DKA O27 O4 O 0 1 N N N N N N 20.350 11.621 -32.089 2.816 1.881 1.306 O27 A1DKA 45 A1DKA O42 O5 O 0 1 N N N N N N 16.588 11.851 -35.169 7.388 0.883 -0.687 O42 A1DKA 46 A1DKA O43 O6 O 0 1 N N N N N N 17.436 13.585 -33.973 6.187 -0.976 -0.850 O43 A1DKA 47 A1DKA H111 H1 H 0 0 N N N N N N 19.577 3.544 -27.114 -4.430 -0.040 -3.473 H111 A1DKA 48 A1DKA H112 H2 H 0 0 N N N N N N 18.286 4.746 -27.452 -5.823 0.978 -3.035 H112 A1DKA 49 A1DKA H132 H3 H 0 0 N N N N N N 21.949 5.236 -26.376 -5.246 2.995 -1.641 H132 A1DKA 50 A1DKA H131 H4 H 0 0 N N N N N N 22.145 4.426 -27.967 -5.053 2.068 -0.125 H131 A1DKA 51 A1DKA H172 H5 H 0 0 N N N N N N 21.640 8.604 -27.702 -1.136 3.018 -2.324 H172 A1DKA 52 A1DKA H171 H6 H 0 0 N N N N N N 22.495 8.761 -29.273 -0.676 3.544 -0.686 H171 A1DKA 53 A1DKA H182 H7 H 0 0 N N N N N N 19.501 9.039 -28.764 -0.189 0.778 -1.886 H182 A1DKA 54 A1DKA H181 H8 H 0 0 N N N N N N 20.663 10.349 -29.165 1.044 2.035 -1.621 H181 A1DKA 55 A1DKA H021 H9 H 0 0 N N N N N N 19.695 7.077 -25.772 -7.283 0.366 -1.201 H021 A1DKA 56 A1DKA H031 H10 H 0 0 N N N N N N 19.631 7.519 -23.341 -8.200 -1.458 0.170 H031 A1DKA 57 A1DKA H051 H11 H 0 0 N N N N N N 18.781 3.391 -22.627 -4.845 -3.912 -0.885 H051 A1DKA 58 A1DKA H061 H12 H 0 0 N N N N N N 18.858 2.946 -25.034 -3.948 -2.077 -2.255 H061 A1DKA 59 A1DKA H202 H13 H 0 0 N N N N N N 18.950 7.401 -30.602 -0.768 0.167 1.655 H202 A1DKA 60 A1DKA H201 H14 H 0 0 N N N N N N 19.877 7.582 -32.129 -1.231 -0.297 -0.000 H201 A1DKA 61 A1DKA H212 H15 H 0 0 N N N N N N 20.762 5.790 -30.584 -1.792 2.392 1.333 H212 A1DKA 62 A1DKA H211 H16 H 0 0 N N N N N N 21.959 7.051 -31.035 -2.986 1.109 1.023 H211 A1DKA 63 A1DKA H241 H17 H 0 0 N N N N N N 18.959 9.390 -32.171 1.389 -0.481 -0.599 H241 A1DKA 64 A1DKA H242 H18 H 0 0 N N N N N N 18.318 9.512 -30.497 1.367 -0.314 1.173 H242 A1DKA 65 A1DKA H251 H19 H 0 0 N N N N N N 19.588 11.637 -30.188 2.752 1.617 -0.742 H251 A1DKA 66 A1DKA H261 H20 H 0 0 N N N N N N 18.277 13.094 -31.721 3.801 -0.664 -0.642 H261 A1DKA 67 A1DKA H292 H21 H 0 0 N N N N N N 16.519 10.779 -30.801 4.155 0.004 2.314 H292 A1DKA 68 A1DKA H291 H22 H 0 0 N N N N N N 17.324 11.886 -29.637 2.993 -1.186 1.679 H291 A1DKA 69 A1DKA H311 H23 H 0 0 N N N N N N 14.560 11.523 -32.026 6.544 -0.419 2.220 H311 A1DKA 70 A1DKA H321 H24 H 0 0 N N N N N N 12.791 13.221 -32.307 8.323 -2.119 2.151 H321 A1DKA 71 A1DKA H331 H25 H 0 0 N N N N N N 13.051 15.463 -31.329 7.822 -4.395 1.357 H331 A1DKA 72 A1DKA H341 H26 H 0 0 N N N N N N 15.074 16.007 -30.036 5.540 -4.971 0.632 H341 A1DKA 73 A1DKA H351 H27 H 0 0 N N N N N N 16.851 14.325 -29.759 3.759 -3.273 0.706 H351 A1DKA 74 A1DKA H361 H28 H 0 0 N N N N N N 23.990 5.027 -26.300 -1.395 4.431 0.525 H361 A1DKA 75 A1DKA H371 H29 H 0 0 N N N N N N 26.433 5.055 -26.177 -1.569 5.506 2.732 H371 A1DKA 76 A1DKA H381 H30 H 0 0 N N N N N N 27.755 6.512 -27.666 -3.695 5.442 3.970 H381 A1DKA 77 A1DKA H391 H31 H 0 0 N N N N N N 26.597 7.934 -29.318 -5.652 4.303 3.006 H391 A1DKA 78 A1DKA H401 H32 H 0 0 N N N N N N 24.142 7.911 -29.471 -5.489 3.225 0.800 H401 A1DKA 79 A1DKA H453 H33 H 0 0 N N N N N N 14.820 14.381 -36.596 7.287 -1.017 -2.572 H453 A1DKA 80 A1DKA H452 H34 H 0 0 N N N N N N 14.245 13.230 -35.343 7.889 0.496 -3.290 H452 A1DKA 81 A1DKA H451 H35 H 0 0 N N N N N N 15.579 14.373 -34.968 8.989 -0.886 -3.075 H451 A1DKA 82 A1DKA H461 H36 H 0 0 N N N N N N 16.979 14.007 -37.762 9.718 -1.558 -0.781 H461 A1DKA 83 A1DKA H462 H37 H 0 0 N N N N N N 17.915 13.973 -36.230 9.137 -0.654 0.638 H462 A1DKA 84 A1DKA H463 H38 H 0 0 N N N N N N 18.007 12.587 -37.368 8.016 -1.689 -0.279 H463 A1DKA 85 A1DKA H472 H39 H 0 0 N N N N N N 15.114 12.405 -38.113 9.463 1.949 -2.003 H472 A1DKA 86 A1DKA H471 H40 H 0 0 N N N N N N 16.175 11.039 -37.629 9.982 1.470 -0.370 H471 A1DKA 87 A1DKA H473 H41 H 0 0 N N N N N N 14.605 11.297 -36.795 10.563 0.566 -1.788 H473 A1DKA 88 A1DKA H091 H42 H 0 0 N N N N N N 18.910 3.696 -20.696 -5.629 -5.198 0.167 H091 A1DKA 89 A1DKA H281 H44 H 0 0 N N N N N N 17.610 10.536 -33.114 5.204 1.734 0.257 H281 A1DKA 90 A1DKA H101 H45 H 0 0 N N N N N N 19.081 5.766 -18.776 -6.443 -6.930 1.433 H101 A1DKA 91 A1DKA H271 H46 H 0 0 N N N N N N 20.448 12.565 -32.119 2.801 1.417 2.154 H271 A1DKA 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DKA C01 C02 DOUB Y N 1 A1DKA C02 C03 SING Y N 2 A1DKA C03 C04 DOUB Y N 3 A1DKA C04 C05 SING Y N 4 A1DKA C05 C06 DOUB Y N 5 A1DKA C06 C01 SING Y N 6 A1DKA C04 C07 SING N N 7 A1DKA C07 O08 DOUB N N 8 A1DKA C07 N09 SING N N 9 A1DKA N09 O10 SING N N 10 A1DKA C01 C11 SING N N 11 A1DKA C11 N12 SING N N 12 A1DKA N12 C13 SING N N 13 A1DKA C13 N14 SING N N 14 A1DKA N14 C15 SING N N 15 A1DKA C15 C16 SING N N 16 A1DKA C16 N12 SING N N 17 A1DKA C15 C17 SING N N 18 A1DKA C17 C18 SING N N 19 A1DKA C18 N19 SING N N 20 A1DKA N19 C20 SING N N 21 A1DKA C20 C21 SING N N 22 A1DKA C21 C15 SING N N 23 A1DKA N14 C22 SING N N 24 A1DKA C16 O23 DOUB N N 25 A1DKA N19 C24 SING N N 26 A1DKA C24 C25 SING N N 27 A1DKA C25 C26 SING N N 28 A1DKA C25 O27 SING N N 29 A1DKA C26 N28 SING N N 30 A1DKA C26 C29 SING N N 31 A1DKA C29 C30 SING N N 32 A1DKA C30 C31 DOUB Y N 33 A1DKA C31 C32 SING Y N 34 A1DKA C32 C33 DOUB Y N 35 A1DKA C33 C34 SING Y N 36 A1DKA C34 C35 DOUB Y N 37 A1DKA C35 C30 SING Y N 38 A1DKA C22 C36 DOUB Y N 39 A1DKA C36 C37 SING Y N 40 A1DKA C37 C38 DOUB Y N 41 A1DKA C38 C39 SING Y N 42 A1DKA C39 C40 DOUB Y N 43 A1DKA C40 C22 SING Y N 44 A1DKA N28 C41 SING N N 45 A1DKA C41 O42 SING N N 46 A1DKA C41 O43 DOUB N N 47 A1DKA O42 C44 SING N N 48 A1DKA C44 C45 SING N N 49 A1DKA C44 C46 SING N N 50 A1DKA C44 C47 SING N N 51 A1DKA C11 H111 SING N N 52 A1DKA C11 H112 SING N N 53 A1DKA C13 H132 SING N N 54 A1DKA C13 H131 SING N N 55 A1DKA C17 H172 SING N N 56 A1DKA C17 H171 SING N N 57 A1DKA C18 H182 SING N N 58 A1DKA C18 H181 SING N N 59 A1DKA C02 H021 SING N N 60 A1DKA C03 H031 SING N N 61 A1DKA C05 H051 SING N N 62 A1DKA C06 H061 SING N N 63 A1DKA C20 H202 SING N N 64 A1DKA C20 H201 SING N N 65 A1DKA C21 H212 SING N N 66 A1DKA C21 H211 SING N N 67 A1DKA C24 H241 SING N N 68 A1DKA C24 H242 SING N N 69 A1DKA C25 H251 SING N N 70 A1DKA C26 H261 SING N N 71 A1DKA C29 H292 SING N N 72 A1DKA C29 H291 SING N N 73 A1DKA C31 H311 SING N N 74 A1DKA C32 H321 SING N N 75 A1DKA C33 H331 SING N N 76 A1DKA C34 H341 SING N N 77 A1DKA C35 H351 SING N N 78 A1DKA C36 H361 SING N N 79 A1DKA C37 H371 SING N N 80 A1DKA C38 H381 SING N N 81 A1DKA C39 H391 SING N N 82 A1DKA C40 H401 SING N N 83 A1DKA C45 H453 SING N N 84 A1DKA C45 H452 SING N N 85 A1DKA C45 H451 SING N N 86 A1DKA C46 H461 SING N N 87 A1DKA C46 H462 SING N N 88 A1DKA C46 H463 SING N N 89 A1DKA C47 H472 SING N N 90 A1DKA C47 H471 SING N N 91 A1DKA C47 H473 SING N N 92 A1DKA N09 H091 SING N N 93 A1DKA N28 H281 SING N N 94 A1DKA O10 H101 SING N N 95 A1DKA O27 H271 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DKA SMILES ACDLabs 14.52 "CC(C)(C)OC(=O)NC(Cc1ccccc1)C(O)CN1CCC2(CC1)C(=O)N(CN2c1ccccc1)Cc1ccc(cc1)C(=O)NO" A1DKA InChI InChI 1.06 "InChI=1S/C36H45N5O6/c1-35(2,3)47-34(45)37-30(22-26-10-6-4-7-11-26)31(42)24-39-20-18-36(19-21-39)33(44)40(25-41(36)29-12-8-5-9-13-29)23-27-14-16-28(17-15-27)32(43)38-46/h4-17,30-31,42,46H,18-25H2,1-3H3,(H,37,45)(H,38,43)/t30-,31+/m0/s1" A1DKA InChIKey InChI 1.06 KYBOOIOFRQYAKA-IOWSJCHKSA-N A1DKA SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)[C@H](O)CN2CCC3(CC2)N(CN(Cc4ccc(cc4)C(=O)NO)C3=O)c5ccccc5" A1DKA SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N[CH](Cc1ccccc1)[CH](O)CN2CCC3(CC2)N(CN(Cc4ccc(cc4)C(=O)NO)C3=O)c5ccccc5" A1DKA SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)[C@@H](CN2CCC3(CC2)C(=O)N(CN3c4ccccc4)Cc5ccc(cc5)C(=O)NO)O" A1DKA SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)(C)OC(=O)NC(Cc1ccccc1)C(CN2CCC3(CC2)C(=O)N(CN3c4ccccc4)Cc5ccc(cc5)C(=O)NO)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DKA "SYSTEMATIC NAME" ACDLabs 14.52 "tert-butyl [(2S,3R)-3-hydroxy-4-(3-{[4-(hydroxycarbamoyl)phenyl]methyl}-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]decan-8-yl)-1-phenylbutan-2-yl]carbamate" A1DKA "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-oxidanyl-4-[3-[[4-(oxidanylcarbamoyl)phenyl]methyl]-4-oxidanylidene-1-phenyl-1,3,8-triazaspiro[4.5]decan-8-yl]-1-phenyl-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DKA "Create component" 2026-06-16 RCSB A1DKA "Initial release" 2026-11-11 RCSB #