data_A1DKD # _chem_comp.id A1DKD _chem_comp.name "(2S)-2-{(5S)-7-[(2R,3S)-2-amino-3-cyclopropyl-3-hydroxypropanoyl]-1-oxo-2,7-diazaspiro[4.4]nonan-2-yl}-2-cyclopentyl-N-[(1M,8S,10R,14S,21M)-22-ethyl-4-hydroxy-21-{2-[(1S)-1-methoxyethyl]pyridin-3-yl}-18,18-dimethyl-9,15-dioxo-16-oxa-10,22,28-triazapentacyclo[18.5.2.1~2,6~.1~10,14~.0~23,27~]nonacosa-1(25),2(29),3,5,20,23,26-heptaen-8-yl]acetamide (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C57 H74 N8 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-06-16 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1015.246 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DKD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 36KP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DKD N N1 N 0 1 N N N N N N 10.751 -15.245 3.117 0.628 -0.033 1.210 N A1DKD 1 A1DKD C C1 C 0 1 N N S N N N 10.132 -14.344 2.169 0.554 -0.243 2.658 C A1DKD 2 A1DKD O O1 O 0 1 N N N N N N 8.869 -18.861 -0.063 -0.441 -6.222 3.444 O A1DKD 3 A1DKD C1 C2 C 0 1 N N N N N N 8.607 -14.490 2.182 1.125 -1.620 3.002 C1 A1DKD 4 A1DKD C10 C3 C 0 1 Y N N N N N 4.554 -13.936 -3.037 -4.904 -1.316 0.465 C10 A1DKD 5 A1DKD C11 C4 C 0 1 Y N N N N N 3.808 -14.978 -3.738 -5.941 -2.268 0.446 C11 A1DKD 6 A1DKD C12 C5 C 0 1 Y N N N N N 3.990 -16.316 -3.429 -5.709 -3.548 0.941 C12 A1DKD 7 A1DKD C13 C6 C 0 1 Y N N N N N 4.931 -16.610 -2.439 -4.488 -3.873 1.460 C13 A1DKD 8 A1DKD C14 C7 C 0 1 N N N N N N 1.975 -15.000 -5.466 -8.365 -2.282 -0.253 C14 A1DKD 9 A1DKD C15 C8 C 0 1 N N N N N N 0.795 -15.168 -4.500 -8.443 -2.970 -1.618 C15 A1DKD 10 A1DKD C16 C9 C 0 1 Y N N N N N 3.146 -12.996 -4.572 -6.738 -0.368 -0.467 C16 A1DKD 11 A1DKD C17 C10 C 0 1 Y N N N N N 2.351 -12.013 -5.365 -7.672 0.587 -1.101 C17 A1DKD 12 A1DKD C18 C11 C 0 1 Y N N N N N 2.492 -11.861 -6.812 -7.677 0.763 -2.485 C18 A1DKD 13 A1DKD C19 C12 C 0 1 N N S N N N 3.449 -12.678 -7.594 -6.723 -0.029 -3.341 C19 A1DKD 14 A1DKD C2 C13 C 0 1 Y N N N N N 8.166 -15.486 1.134 0.056 -2.668 2.824 C2 A1DKD 15 A1DKD C20 C14 C 0 1 N N N N N N 4.351 -11.858 -8.520 -5.585 0.880 -3.812 C20 A1DKD 16 A1DKD C21 C15 C 0 1 N N N N N N 3.338 -14.757 -8.741 -6.895 -1.783 -4.966 C21 A1DKD 17 A1DKD C22 C16 C 0 1 Y N N N N N 0.887 -10.146 -6.774 -9.361 2.328 -2.340 C22 A1DKD 18 A1DKD C23 C17 C 0 1 Y N N N N N 0.690 -10.281 -5.397 -9.422 2.208 -0.963 C23 A1DKD 19 A1DKD C24 C18 C 0 1 Y N N N N N 1.464 -11.204 -4.678 -8.569 1.327 -0.322 C24 A1DKD 20 A1DKD C25 C19 C 0 1 Y N N N N N 4.146 -12.633 -3.552 -5.442 -0.110 -0.162 C25 A1DKD 21 A1DKD C26 C20 C 0 1 N N N N N N 4.593 -11.239 -3.122 -4.694 1.167 -0.444 C26 A1DKD 22 A1DKD C27 C21 C 0 1 N N N N N N 5.832 -10.669 -3.769 -4.757 2.086 0.776 C27 A1DKD 23 A1DKD C28 C22 C 0 1 N N N N N N 6.032 -9.243 -3.179 -4.439 1.282 2.038 C28 A1DKD 24 A1DKD C29 C23 C 0 1 N N N N N N 5.704 -10.589 -5.287 -6.160 2.684 0.892 C29 A1DKD 25 A1DKD C3 C24 C 0 1 Y N N N N N 7.154 -15.136 0.245 -1.158 -2.326 2.264 C3 A1DKD 26 A1DKD C30 C25 C 0 1 N N N N N N 7.033 -11.533 -3.440 -3.734 3.214 0.620 C30 A1DKD 27 A1DKD C31 C26 C 0 1 N N N N N N 8.505 -12.002 -1.600 -1.767 3.960 1.756 C31 A1DKD 28 A1DKD C32 C27 C 0 1 N N S N N N 8.834 -11.610 -0.203 -0.579 3.711 2.654 C32 A1DKD 29 A1DKD C33 C28 C 0 1 N N N N N N 9.101 -10.112 -0.138 0.409 4.869 2.559 C33 A1DKD 30 A1DKD C34 C29 C 0 1 N N N N N N 9.670 -9.689 1.225 1.822 4.429 2.926 C34 A1DKD 31 A1DKD C35 C30 C 0 1 N N N N N N 10.814 -10.624 1.591 1.802 3.192 3.822 C35 A1DKD 32 A1DKD C36 C31 C 0 1 N N N N N N 10.503 -12.924 2.440 1.346 0.830 3.363 C36 A1DKD 33 A1DKD C37 C32 C 0 1 N N N N N N 11.628 -16.137 2.695 1.828 0.068 0.605 C37 A1DKD 34 A1DKD C38 C33 C 0 1 N N S N N N 12.121 -17.096 3.789 1.908 0.446 -0.852 C38 A1DKD 35 A1DKD C39 C34 C 0 1 N N N N N N 13.661 -17.077 3.974 1.834 -0.817 -1.712 C39 A1DKD 36 A1DKD C4 C35 C 0 1 Y N N N N N 6.700 -16.027 -0.749 -2.150 -3.293 2.105 C4 A1DKD 37 A1DKD C40 C36 C 0 1 N N N N N N 14.162 -18.029 5.066 2.072 -0.462 -3.194 C40 A1DKD 38 A1DKD C41 C37 C 0 1 N N N N N N 14.499 -17.110 6.227 1.111 -1.399 -3.968 C41 A1DKD 39 A1DKD C42 C38 C 0 1 N N N N N N 14.894 -15.763 5.640 -0.144 -1.426 -3.061 C42 A1DKD 40 A1DKD C43 C39 C 0 1 N N N N N N 14.141 -15.656 4.320 0.425 -1.430 -1.627 C43 A1DKD 41 A1DKD C44 C40 C 0 1 N N N N N N 10.493 -18.843 4.181 4.390 0.565 -0.996 C44 A1DKD 42 A1DKD C45 C41 C 0 1 N N R N N N 10.231 -20.272 3.774 5.451 1.577 -1.305 C45 A1DKD 43 A1DKD C46 C42 C 0 1 N N N N N N 11.552 -20.705 3.118 4.756 2.941 -1.248 C46 A1DKD 44 A1DKD C47 C43 C 0 1 N N N N N N 12.245 -19.410 2.654 3.283 2.546 -1.512 C47 A1DKD 45 A1DKD C48 C44 C 0 1 N N N N N N 9.767 -21.101 4.977 6.633 1.502 -0.329 C48 A1DKD 46 A1DKD C49 C45 C 0 1 N N N N N N 7.453 -21.330 5.946 8.441 -0.241 -0.212 C49 A1DKD 47 A1DKD C5 C46 C 0 1 Y N N N N N 7.295 -17.283 -0.847 -1.907 -4.605 2.502 C5 A1DKD 48 A1DKD C50 C47 C 0 1 N N R N N N 5.888 -21.211 5.806 9.361 -1.186 -0.940 C50 A1DKD 49 A1DKD C51 C48 C 0 1 N N S N N N 5.348 -19.779 5.970 10.506 -0.394 -1.576 C51 A1DKD 50 A1DKD C52 C49 C 0 1 N N N N N N 5.434 -19.238 7.398 11.441 -1.353 -2.315 C52 A1DKD 51 A1DKD C53 C50 C 0 1 N N N N N N 5.705 -17.727 7.382 12.842 -1.559 -1.738 C53 A1DKD 52 A1DKD C54 C51 C 0 1 N N N N N N 6.819 -18.711 7.731 12.656 -0.750 -3.023 C54 A1DKD 53 A1DKD C55 C52 C 0 1 N N N N N N 7.821 -20.316 3.720 7.244 0.344 -2.337 C55 A1DKD 54 A1DKD C56 C53 C 0 1 N N N N N N 9.038 -20.351 2.847 6.106 1.334 -2.674 C56 A1DKD 55 A1DKD C6 C54 C 0 1 Y N N N N N 8.293 -17.631 0.027 -0.683 -4.942 3.057 C6 A1DKD 56 A1DKD C7 C55 C 0 1 Y N N N N N 8.721 -16.761 1.029 0.297 -3.972 3.217 C7 A1DKD 57 A1DKD C8 C56 C 0 1 Y N N N N N 5.657 -15.619 -1.749 -3.461 -2.927 1.514 C8 A1DKD 58 A1DKD C9 C57 C 0 1 Y N N N N N 5.489 -14.291 -2.079 -3.663 -1.648 1.015 C9 A1DKD 59 A1DKD N1 N2 N 0 1 Y N N N N N 3.001 -14.354 -4.631 -7.050 -1.656 -0.096 N1 A1DKD 60 A1DKD N2 N3 N 0 1 Y N N N N N 1.743 -10.906 -7.457 -8.508 1.614 -3.049 N2 A1DKD 61 A1DKD N3 N4 N 0 1 N N N N N N 10.418 -12.028 1.472 1.069 2.126 3.131 N3 A1DKD 62 A1DKD N4 N5 N 0 1 N N N N N N 9.965 -12.437 0.239 0.078 2.463 2.240 N4 A1DKD 63 A1DKD N5 N6 N 0 1 N N N N N N 11.610 -18.472 3.568 3.174 1.138 -1.108 N5 A1DKD 64 A1DKD N6 N7 N 0 1 N N N N N N 8.290 -20.941 4.954 7.523 0.469 -0.898 N6 A1DKD 65 A1DKD N7 N8 N 0 1 N N N N N N 5.318 -21.724 4.518 9.910 -2.163 0.009 N7 A1DKD 66 A1DKD O1 O2 O 0 1 N N N N N N 2.640 -13.576 -8.370 -7.419 -0.547 -4.476 O1 A1DKD 67 A1DKD O2 O3 O 0 1 N N N N N N 7.328 -11.433 -2.057 -2.566 2.926 1.432 O2 A1DKD 68 A1DKD O3 O4 O 0 1 N N N N N N 9.158 -12.724 -2.297 -1.997 5.070 1.336 O3 A1DKD 69 A1DKD O4 O5 O 0 1 N N N N N N 10.911 -12.615 3.563 2.230 0.525 4.136 O4 A1DKD 70 A1DKD O5 O6 O 0 1 N N N N N N 9.810 -18.169 4.914 4.594 -0.592 -0.696 O5 A1DKD 71 A1DKD O6 O7 O 0 1 N N N N N N 7.897 -21.816 6.978 8.525 -0.119 0.992 O6 A1DKD 72 A1DKD O7 O8 O 0 1 N N N N N N 12.082 -16.249 1.552 2.844 -0.146 1.232 O7 A1DKD 73 A1DKD O8 O9 O 0 1 N N N N N N 3.972 -19.777 5.537 11.236 0.291 -0.556 O8 A1DKD 74 A1DKD H6 H1 H 0 1 N N N N N N 10.516 -15.192 4.087 -0.186 0.031 0.687 H6 A1DKD 75 A1DKD H H2 H 0 1 N N N N N N 10.482 -14.601 1.158 -0.487 -0.194 2.978 H A1DKD 76 A1DKD H11 H3 H 0 1 N N N N N N 9.537 -18.948 0.607 -0.057 -6.776 2.751 H11 A1DKD 77 A1DKD H7 H4 H 0 1 N N N N N N 8.284 -14.840 3.174 1.964 -1.840 2.341 H7 A1DKD 78 A1DKD H8 H5 H 0 1 N N N N N N 8.147 -13.513 1.971 1.468 -1.623 4.036 H8 A1DKD 79 A1DKD H14 H6 H 0 1 N N N N N N 3.432 -17.094 -3.929 -6.496 -4.287 0.913 H14 A1DKD 80 A1DKD H15 H7 H 0 1 N N N N N N 5.110 -17.646 -2.191 -4.315 -4.872 1.833 H15 A1DKD 81 A1DKD H16 H8 H 0 1 N N N N N N 1.700 -14.361 -6.318 -9.141 -1.519 -0.186 H16 A1DKD 82 A1DKD H17 H9 H 0 1 N N N N N N 2.324 -15.975 -5.836 -8.513 -3.021 0.535 H17 A1DKD 83 A1DKD H18 H10 H 0 1 N N N N N N -0.044 -15.649 -5.025 -9.422 -3.435 -1.735 H18 A1DKD 84 A1DKD H19 H11 H 0 1 N N N N N N 1.103 -15.795 -3.650 -8.296 -2.231 -2.406 H19 A1DKD 85 A1DKD H20 H12 H 0 1 N N N N N N 0.479 -14.181 -4.132 -7.668 -3.732 -1.685 H20 A1DKD 86 A1DKD H1 H13 H 0 1 N N N N N N 4.085 -13.251 -6.903 -6.311 -0.854 -2.760 H1 A1DKD 87 A1DKD H21 H14 H 0 1 N N N N N N 5.030 -12.532 -9.063 -5.054 1.275 -2.947 H21 A1DKD 88 A1DKD H22 H15 H 0 1 N N N N N N 3.731 -11.304 -9.240 -4.896 0.307 -4.432 H22 A1DKD 89 A1DKD H23 H16 H 0 1 N N N N N N 4.941 -11.148 -7.922 -5.997 1.705 -4.394 H23 A1DKD 90 A1DKD H24 H17 H 0 1 N N N N N N 2.674 -15.406 -9.331 -5.856 -1.645 -5.263 H24 A1DKD 91 A1DKD H25 H18 H 0 1 N N N N N N 4.218 -14.489 -9.344 -6.952 -2.538 -4.182 H25 A1DKD 92 A1DKD H26 H19 H 0 1 N N N N N N 3.662 -15.291 -7.836 -7.478 -2.109 -5.827 H26 A1DKD 93 A1DKD H27 H20 H 0 1 N N N N N N 0.322 -9.395 -7.307 -10.026 3.015 -2.844 H27 A1DKD 94 A1DKD H28 H21 H 0 1 N N N N N N -0.051 -9.680 -4.891 -10.125 2.799 -0.395 H28 A1DKD 95 A1DKD H29 H22 H 0 1 N N N N N N 1.369 -11.282 -3.605 -8.596 1.213 0.752 H29 A1DKD 96 A1DKD H30 H23 H 0 1 N N N N N N 4.774 -11.272 -2.038 -3.653 0.934 -0.669 H30 A1DKD 97 A1DKD H31 H24 H 0 1 N N N N N N 3.764 -10.548 -3.334 -5.146 1.670 -1.299 H31 A1DKD 98 A1DKD H32 H25 H 0 1 N N N N N N 5.158 -8.620 -3.420 -5.168 0.479 2.150 H32 A1DKD 99 A1DKD H33 H26 H 0 1 N N N N N N 6.144 -9.311 -2.087 -3.440 0.856 1.956 H33 A1DKD 100 A1DKD H34 H27 H 0 1 N N N N N N 6.936 -8.790 -3.613 -4.485 1.937 2.908 H34 A1DKD 101 A1DKD H35 H28 H 0 1 N N N N N N 4.837 -9.965 -5.550 -6.160 3.467 1.651 H35 A1DKD 102 A1DKD H36 H29 H 0 1 N N N N N N 6.617 -10.144 -5.709 -6.455 3.108 -0.068 H36 A1DKD 103 A1DKD H37 H30 H 0 1 N N N N N N 5.566 -11.600 -5.697 -6.865 1.903 1.176 H37 A1DKD 104 A1DKD H9 H31 H 0 1 N N N N N N 6.705 -14.157 0.318 -1.340 -1.309 1.949 H9 A1DKD 105 A1DKD H38 H32 H 0 1 N N N N N N 7.900 -11.192 -4.025 -3.438 3.295 -0.426 H38 A1DKD 106 A1DKD H39 H33 H 0 1 N N N N N N 6.810 -12.580 -3.692 -4.179 4.155 0.945 H39 A1DKD 107 A1DKD H2 H34 H 0 1 N N N N N N 7.965 -11.829 0.435 -0.925 3.611 3.684 H2 A1DKD 108 A1DKD H40 H35 H 0 1 N N N N N N 8.157 -9.575 -0.311 0.410 5.254 1.539 H40 A1DKD 109 A1DKD H41 H36 H 0 1 N N N N N N 9.824 -9.845 -0.923 0.096 5.661 3.238 H41 A1DKD 110 A1DKD H42 H37 H 0 1 N N N N N N 8.882 -9.752 1.990 2.373 4.200 2.014 H42 A1DKD 111 A1DKD H43 H38 H 0 1 N N N N N N 10.042 -8.655 1.166 2.324 5.242 3.451 H43 A1DKD 112 A1DKD H44 H39 H 0 1 N N N N N N 11.120 -10.426 2.629 2.823 2.866 4.019 H44 A1DKD 113 A1DKD H45 H40 H 0 1 N N N N N N 11.661 -10.433 0.916 1.306 3.431 4.763 H45 A1DKD 114 A1DKD H3 H41 H 0 1 N N N N N N 11.690 -16.739 4.736 1.077 1.106 -1.102 H3 A1DKD 115 A1DKD H47 H42 H 0 1 N N N N N N 14.123 -17.373 3.020 2.576 -1.541 -1.376 H47 A1DKD 116 A1DKD H48 H43 H 0 1 N N N N N N 13.378 -18.746 5.350 1.819 0.582 -3.381 H48 A1DKD 117 A1DKD H49 H44 H 0 1 N N N N N N 15.055 -18.576 4.728 3.107 -0.660 -3.472 H49 A1DKD 118 A1DKD H50 H45 H 0 1 N N N N N N 15.335 -17.528 6.807 0.872 -0.983 -4.946 H50 A1DKD 119 A1DKD H51 H46 H 0 1 N N N N N N 13.622 -16.993 6.881 1.541 -2.396 -4.067 H51 A1DKD 120 A1DKD H52 H47 H 0 1 N N N N N N 15.980 -15.723 5.467 -0.754 -0.538 -3.227 H52 A1DKD 121 A1DKD H53 H48 H 0 1 N N N N N N 14.600 -14.948 6.317 -0.728 -2.328 -3.244 H53 A1DKD 122 A1DKD H54 H49 H 0 1 N N N N N N 14.808 -15.278 3.531 0.484 -2.452 -1.252 H54 A1DKD 123 A1DKD H55 H50 H 0 1 N N N N N N 13.280 -14.980 4.427 -0.206 -0.827 -0.973 H55 A1DKD 124 A1DKD H56 H51 H 0 1 N N N N N N 11.354 -21.361 2.258 4.869 3.397 -0.264 H56 A1DKD 125 A1DKD H57 H52 H 0 1 N N N N N N 12.183 -21.236 3.846 5.130 3.604 -2.029 H57 A1DKD 126 A1DKD H58 H53 H 0 1 N N N N N N 12.022 -19.177 1.602 2.614 3.165 -0.915 H58 A1DKD 127 A1DKD H59 H54 H 0 1 N N N N N N 13.335 -19.451 2.797 3.049 2.651 -2.571 H59 A1DKD 128 A1DKD H60 H55 H 0 1 N N N N N N 10.051 -22.157 4.860 7.148 2.461 -0.281 H60 A1DKD 129 A1DKD H61 H56 H 0 1 N N N N N N 10.191 -20.709 5.913 6.290 1.205 0.662 H61 A1DKD 130 A1DKD H10 H57 H 0 1 N N N N N N 6.972 -17.979 -1.607 -2.670 -5.359 2.378 H10 A1DKD 131 A1DKD H4 H58 H 0 1 N N N N N N 5.455 -21.812 6.619 8.805 -1.708 -1.719 H4 A1DKD 132 A1DKD H511 H59 H 0 0 N N N N N N 5.935 -19.117 5.317 10.099 0.332 -2.280 H511 A1DKD 133 A1DKD H62 H60 H 0 1 N N N N N N 4.803 -19.672 8.188 10.959 -2.210 -2.786 H62 A1DKD 134 A1DKD H63 H61 H 0 1 N N N N N N 5.730 -17.181 6.427 13.099 -1.011 -0.831 H63 A1DKD 135 A1DKD H64 H62 H 0 1 N N N N N N 5.275 -17.081 8.162 13.283 -2.552 -1.827 H64 A1DKD 136 A1DKD H65 H63 H 0 1 N N N N N N 7.195 -18.770 8.763 12.974 -1.211 -3.958 H65 A1DKD 137 A1DKD H66 H64 H 0 1 N N N N N N 7.650 -18.870 7.028 12.789 0.330 -2.962 H66 A1DKD 138 A1DKD H68 H65 H 0 1 N N N N N N 7.492 -19.282 3.900 6.929 -0.674 -2.566 H68 A1DKD 139 A1DKD H69 H66 H 0 1 N N N N N N 6.996 -20.891 3.273 8.137 0.593 -2.911 H69 A1DKD 140 A1DKD H70 H67 H 0 1 N N N N N N 9.036 -19.495 2.156 5.395 0.885 -3.367 H70 A1DKD 141 A1DKD H71 H68 H 0 1 N N N N N N 9.066 -21.287 2.270 6.509 2.262 -3.079 H71 A1DKD 142 A1DKD H12 H69 H 0 1 N N N N N N 9.484 -17.075 1.726 1.250 -4.237 3.650 H12 A1DKD 143 A1DKD H13 H70 H 0 1 N N N N N N 6.083 -13.531 -1.593 -2.870 -0.917 1.050 H13 A1DKD 144 A1DKD H46 H71 H 0 1 N N N N N N 10.708 -12.358 -0.426 0.445 2.540 1.304 H46 A1DKD 145 A1DKD H67 H72 H 0 1 N N N N N N 4.325 -21.607 4.522 10.431 -1.704 0.740 H67 A1DKD 146 A1DKD HN7 H73 H 0 1 N N N N N N 5.711 -21.213 3.753 9.180 -2.743 0.394 HN7 A1DKD 147 A1DKD HO8 H75 H 0 1 N N N N N N 3.612 -18.902 5.628 11.627 -0.294 0.108 HO8 A1DKD 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DKD O7 C37 DOUB N N 1 A1DKD C37 C38 SING N N 2 A1DKD C37 N SING N N 3 A1DKD C38 N5 SING N N 4 A1DKD C38 C39 SING N N 5 A1DKD N5 C47 SING N N 6 A1DKD N5 C44 SING N N 7 A1DKD C47 C46 SING N N 8 A1DKD C46 C45 SING N N 9 A1DKD C45 C56 SING N N 10 A1DKD C45 C48 SING N N 11 A1DKD C45 C44 SING N N 12 A1DKD C56 C55 SING N N 13 A1DKD C55 N6 SING N N 14 A1DKD N6 C49 SING N N 15 A1DKD N6 C48 SING N N 16 A1DKD C49 C50 SING N N 17 A1DKD C49 O6 DOUB N N 18 A1DKD C50 N7 SING N N 19 A1DKD C50 C51 SING N N 20 A1DKD C51 O8 SING N N 21 A1DKD C51 C52 SING N N 22 A1DKD C52 C54 SING N N 23 A1DKD C52 C53 SING N N 24 A1DKD C54 C53 SING N N 25 A1DKD C44 O5 DOUB N N 26 A1DKD C39 C43 SING N N 27 A1DKD C39 C40 SING N N 28 A1DKD C43 C42 SING N N 29 A1DKD C42 C41 SING N N 30 A1DKD C41 C40 SING N N 31 A1DKD N C SING N N 32 A1DKD C C36 SING N N 33 A1DKD C C1 SING N N 34 A1DKD C36 O4 DOUB N N 35 A1DKD C36 N3 SING N N 36 A1DKD N3 C35 SING N N 37 A1DKD N3 N4 SING N N 38 A1DKD C35 C34 SING N N 39 A1DKD C34 C33 SING N N 40 A1DKD C33 C32 SING N N 41 A1DKD N4 C32 SING N N 42 A1DKD C32 C31 SING N N 43 A1DKD C31 O3 DOUB N N 44 A1DKD C31 O2 SING N N 45 A1DKD O2 C30 SING N N 46 A1DKD C30 C27 SING N N 47 A1DKD C27 C28 SING N N 48 A1DKD C27 C29 SING N N 49 A1DKD C27 C26 SING N N 50 A1DKD C26 C25 SING N N 51 A1DKD C25 C10 SING Y N 52 A1DKD C25 C16 DOUB Y N 53 A1DKD C10 C9 SING Y N 54 A1DKD C10 C11 DOUB Y N 55 A1DKD C9 C8 DOUB Y N 56 A1DKD C16 C17 SING N N 57 A1DKD C16 N1 SING Y N 58 A1DKD C17 C24 SING Y N 59 A1DKD C17 C18 DOUB Y N 60 A1DKD C24 C23 DOUB Y N 61 A1DKD C23 C22 SING Y N 62 A1DKD C22 N2 DOUB Y N 63 A1DKD N2 C18 SING Y N 64 A1DKD C18 C19 SING N N 65 A1DKD C19 O1 SING N N 66 A1DKD C19 C20 SING N N 67 A1DKD O1 C21 SING N N 68 A1DKD N1 C14 SING N N 69 A1DKD N1 C11 SING Y N 70 A1DKD C14 C15 SING N N 71 A1DKD C11 C12 SING Y N 72 A1DKD C12 C13 DOUB Y N 73 A1DKD C13 C8 SING Y N 74 A1DKD C8 C4 SING N N 75 A1DKD C4 C3 SING Y N 76 A1DKD C4 C5 DOUB Y N 77 A1DKD C3 C2 DOUB Y N 78 A1DKD C5 C6 SING Y N 79 A1DKD C6 O SING N N 80 A1DKD C6 C7 DOUB Y N 81 A1DKD C7 C2 SING Y N 82 A1DKD C2 C1 SING N N 83 A1DKD N H6 SING N N 84 A1DKD C H SING N N 85 A1DKD O H11 SING N N 86 A1DKD C1 H7 SING N N 87 A1DKD C1 H8 SING N N 88 A1DKD C12 H14 SING N N 89 A1DKD C13 H15 SING N N 90 A1DKD C14 H16 SING N N 91 A1DKD C14 H17 SING N N 92 A1DKD C15 H18 SING N N 93 A1DKD C15 H19 SING N N 94 A1DKD C15 H20 SING N N 95 A1DKD C19 H1 SING N N 96 A1DKD C20 H21 SING N N 97 A1DKD C20 H22 SING N N 98 A1DKD C20 H23 SING N N 99 A1DKD C21 H24 SING N N 100 A1DKD C21 H25 SING N N 101 A1DKD C21 H26 SING N N 102 A1DKD C22 H27 SING N N 103 A1DKD C23 H28 SING N N 104 A1DKD C24 H29 SING N N 105 A1DKD C26 H30 SING N N 106 A1DKD C26 H31 SING N N 107 A1DKD C28 H32 SING N N 108 A1DKD C28 H33 SING N N 109 A1DKD C28 H34 SING N N 110 A1DKD C29 H35 SING N N 111 A1DKD C29 H36 SING N N 112 A1DKD C29 H37 SING N N 113 A1DKD C3 H9 SING N N 114 A1DKD C30 H38 SING N N 115 A1DKD C30 H39 SING N N 116 A1DKD C32 H2 SING N N 117 A1DKD C33 H40 SING N N 118 A1DKD C33 H41 SING N N 119 A1DKD C34 H42 SING N N 120 A1DKD C34 H43 SING N N 121 A1DKD C35 H44 SING N N 122 A1DKD C35 H45 SING N N 123 A1DKD C38 H3 SING N N 124 A1DKD C39 H47 SING N N 125 A1DKD C40 H48 SING N N 126 A1DKD C40 H49 SING N N 127 A1DKD C41 H50 SING N N 128 A1DKD C41 H51 SING N N 129 A1DKD C42 H52 SING N N 130 A1DKD C42 H53 SING N N 131 A1DKD C43 H54 SING N N 132 A1DKD C43 H55 SING N N 133 A1DKD C46 H56 SING N N 134 A1DKD C46 H57 SING N N 135 A1DKD C47 H58 SING N N 136 A1DKD C47 H59 SING N N 137 A1DKD C48 H60 SING N N 138 A1DKD C48 H61 SING N N 139 A1DKD C5 H10 SING N N 140 A1DKD C50 H4 SING N N 141 A1DKD C51 H511 SING N N 142 A1DKD C52 H62 SING N N 143 A1DKD C53 H63 SING N N 144 A1DKD C53 H64 SING N N 145 A1DKD C54 H65 SING N N 146 A1DKD C54 H66 SING N N 147 A1DKD C55 H68 SING N N 148 A1DKD C55 H69 SING N N 149 A1DKD C56 H70 SING N N 150 A1DKD C56 H71 SING N N 151 A1DKD C7 H12 SING N N 152 A1DKD C9 H13 SING N N 153 A1DKD N4 H46 SING N N 154 A1DKD N7 H67 SING N N 155 A1DKD N7 HN7 SING N N 156 A1DKD O8 HO8 SING N N 157 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DKD SMILES ACDLabs 14.52 "OC(C1CC1)C(N)C(=O)N1CCC2(C1)CCN(C2=O)C(C1CCCC1)C(=O)NC1Cc2cc(cc(O)c2)c2ccc3c(c2)c(CC(C)(C)COC(=O)C2CCCN(N2)C1=O)c(n3CC)c1cccnc1C(C)OC" A1DKD InChI InChI 1.06 "InChI=1S/C57H74N8O9/c1-6-63-45-18-17-37-29-41(45)42(49(63)40-13-9-21-59-47(40)33(2)73-5)30-56(3,4)32-74-54(71)43-14-10-22-65(61-43)52(69)44(27-34-25-38(37)28-39(66)26-34)60-51(68)48(35-11-7-8-12-35)64-24-20-57(55(64)72)19-23-62(31-57)53(70)46(58)50(67)36-15-16-36/h9,13,17-18,21,25-26,28-29,33,35-36,43-44,46,48,50,61,66-67H,6-8,10-12,14-16,19-20,22-24,27,30-32,58H2,1-5H3,(H,60,68)/t33-,43-,44-,46+,48-,50-,57-/m0/s1" A1DKD InChIKey InChI 1.06 GENYICIGJOFDRR-SHWKIHJWSA-N A1DKD SMILES_CANONICAL CACTVS 3.385 "CCn1c2ccc3cc2c(CC(C)(C)COC(=O)[C@@H]4CCC[N@@](N4)C(=O)[C@H](Cc5cc(O)cc3c5)NC(=O)[C@H](C6CCCC6)N7CC[C@]8(CCN(C8)C(=O)[C@H](N)[C@@H](O)C9CC9)C7=O)c1c%10cccnc%10[C@H](C)OC" A1DKD SMILES CACTVS 3.385 "CCn1c2ccc3cc2c(CC(C)(C)COC(=O)[CH]4CCC[N](N4)C(=O)[CH](Cc5cc(O)cc3c5)NC(=O)[CH](C6CCCC6)N7CC[C]8(CCN(C8)C(=O)[CH](N)[CH](O)C9CC9)C7=O)c1c%10cccnc%10[CH](C)OC" A1DKD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCn1c2ccc-3cc2c(c1c4cccnc4[C@H](C)OC)CC(COC(=O)[C@@H]5CCCN(N5)C(=O)[C@H](Cc6cc3cc(c6)O)NC(=O)[C@H](C7CCCC7)N8CC[C@@]9(C8=O)CCN(C9)C(=O)[C@@H]([C@H](C1CC1)O)N)(C)C" A1DKD SMILES "OpenEye OEToolkits" 3.1.0.0 "CCn1c2ccc-3cc2c(c1c4cccnc4C(C)OC)CC(COC(=O)C5CCCN(N5)C(=O)C(Cc6cc3cc(c6)O)NC(=O)C(C7CCCC7)N8CCC9(C8=O)CCN(C9)C(=O)C(C(C1CC1)O)N)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DKD "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-2-{(5S)-7-[(2R,3S)-2-amino-3-cyclopropyl-3-hydroxypropanoyl]-1-oxo-2,7-diazaspiro[4.4]nonan-2-yl}-2-cyclopentyl-N-[(1M,8S,10R,14S,21M)-22-ethyl-4-hydroxy-21-{2-[(1S)-1-methoxyethyl]pyridin-3-yl}-18,18-dimethyl-9,15-dioxo-16-oxa-10,22,28-triazapentacyclo[18.5.2.1~2,6~.1~10,14~.0~23,27~]nonacosa-1(25),2(29),3,5,20,23,26-heptaen-8-yl]acetamide (non-preferred name)" A1DKD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2-[(5~{S})-7-[(2~{R},3~{S})-2-azanyl-3-cyclopropyl-3-oxidanyl-propanoyl]-1-oxidanylidene-2,7-diazaspiro[4.4]nonan-2-yl]-2-cyclopentyl-~{N}-[(8~{S},14~{S})-22-ethyl-21-[2-[(1~{S})-1-methoxyethyl]pyridin-3-yl]-18,18-dimethyl-4-oxidanyl-9,15-bis(oxidanylidene)-16-oxa-10,22,28-triazapentacyclo[18.5.2.1^{2,6}.1^{10,14}.0^{23,27}]nonacosa-1(26),2,4,6(29),20,23(27),24-heptaen-8-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DKD "Create component" 2026-06-16 RCSB A1DKD "Initial release" 2026-11-11 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DKD _pdbx_chem_comp_pcm.modified_residue_id ASP _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom N7 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom CG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #