data_A1DKJ # _chem_comp.id A1DKJ _chem_comp.name "2-[(3S)-2,6-dioxopiperidin-3-yl]-3-oxo-2,3-dihydro-1H-isoindol-5-yl sulfurofluoridate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H11 F N2 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-06-22 _chem_comp.pdbx_modified_date 2026-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.300 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DKJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 36MP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DKJ C10 C1 C 0 1 N N S N N N 141.184 133.962 131.385 3.233 -1.246 -0.169 C10 A1DKJ 1 A1DKJ C04 C2 C 0 1 Y N N N N N 137.339 135.990 135.999 -2.582 0.629 -0.616 C04 A1DKJ 2 A1DKJ C05 C3 C 0 1 Y N N N N N 137.846 134.893 135.243 -1.726 -0.444 -0.791 C05 A1DKJ 3 A1DKJ C06 C4 C 0 1 Y N N N N N 138.800 135.133 134.225 -0.366 -0.299 -0.511 C06 A1DKJ 4 A1DKJ C07 C5 C 0 1 Y N N N N N 139.283 136.411 133.882 0.114 0.932 -0.057 C07 A1DKJ 5 A1DKJ C08 C6 C 0 1 N N N N N N 140.317 136.234 132.687 1.598 0.761 0.150 C08 A1DKJ 6 A1DKJ C11 C7 C 0 1 N N N N N N 140.429 133.763 130.044 4.042 -0.813 -1.397 C11 A1DKJ 7 A1DKJ C12 C8 C 0 1 N N N N N N 141.185 132.876 129.047 4.270 0.700 -1.322 C12 A1DKJ 8 A1DKJ C13 C9 C 0 1 N N N N N N 142.544 133.447 128.730 4.933 1.036 -0.013 C13 A1DKJ 9 A1DKJ C15 C10 C 0 1 N N N N N N 142.567 134.550 131.001 3.953 -0.806 1.079 C15 A1DKJ 10 A1DKJ C18 C11 C 0 1 N N N N N N 139.470 134.152 133.326 0.771 -1.237 -0.595 C18 A1DKJ 11 A1DKJ C20 C12 C 0 1 Y N N N N N 138.754 137.481 134.630 -0.744 1.994 0.114 C20 A1DKJ 12 A1DKJ C21 C13 C 0 1 Y N N N N N 137.807 137.275 135.655 -2.091 1.849 -0.170 C21 A1DKJ 13 A1DKJ N09 N1 N 0 1 N N N N N N 140.375 134.741 132.413 1.906 -0.627 -0.213 N09 A1DKJ 14 A1DKJ N14 N2 N 0 1 N N N N N N 143.154 134.254 129.727 4.735 0.286 1.081 N14 A1DKJ 15 A1DKJ O01 O1 O 0 1 N N N N N N 135.817 135.339 139.350 -6.096 0.278 -0.040 O01 A1DKJ 16 A1DKJ O03 O2 O 0 1 N N N N N N 136.406 135.835 136.999 -3.907 0.491 -0.888 O03 A1DKJ 17 A1DKJ O16 O3 O 0 1 N N N N N N 143.180 135.284 131.771 3.822 -1.448 2.098 O16 A1DKJ 18 A1DKJ O17 O4 O 0 1 N N N N N N 143.111 133.233 127.661 5.660 2.004 0.054 O17 A1DKJ 19 A1DKJ O19 O5 O 0 1 N N N N N N 139.317 132.923 133.312 0.691 -2.394 -0.957 O19 A1DKJ 20 A1DKJ O33 O6 O 0 1 N N N N N N 135.834 137.603 138.634 -4.117 0.576 1.458 O33 A1DKJ 21 A1DKJ S02 S1 S 0 1 N N N N N N 136.499 136.365 138.674 -4.738 0.032 0.301 S02 A1DKJ 22 A1DKJ F1 F1 F 0 1 N Y N N N N 138.120 136.510 139.186 -4.577 -1.566 0.407 F1 A1DKJ 23 A1DKJ H101 H1 H 0 0 N N N N N N 141.366 132.961 131.803 3.129 -2.331 -0.166 H101 A1DKJ 24 A1DKJ H051 H2 H 0 0 N N N N N N 137.505 133.888 135.445 -2.109 -1.391 -1.142 H051 A1DKJ 25 A1DKJ H082 H3 H 0 0 N N N N N N 141.309 136.609 132.979 2.148 1.447 -0.493 H082 A1DKJ 26 A1DKJ H081 H4 H 0 0 N N N N N N 139.968 136.775 131.795 1.854 0.941 1.194 H081 A1DKJ 27 A1DKJ H111 H5 H 0 0 N N N N N N 140.270 134.749 129.583 5.002 -1.328 -1.403 H111 A1DKJ 28 A1DKJ H112 H6 H 0 0 N N N N N N 139.456 133.297 130.257 3.489 -1.059 -2.304 H112 A1DKJ 29 A1DKJ H122 H7 H 0 0 N N N N N N 140.601 132.803 128.118 4.911 1.013 -2.146 H122 A1DKJ 30 A1DKJ H121 H8 H 0 0 N N N N N N 141.310 131.873 129.482 3.312 1.217 -1.389 H121 A1DKJ 31 A1DKJ H201 H9 H 0 0 N N N N N N 139.082 138.487 134.413 -0.366 2.942 0.465 H201 A1DKJ 32 A1DKJ H211 H10 H 0 0 N N N N N N 137.428 138.130 136.194 -2.763 2.684 -0.036 H211 A1DKJ 33 A1DKJ H141 H11 H 0 0 N N N N N N 144.054 134.642 129.527 5.174 0.541 1.908 H141 A1DKJ 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DKJ O17 C13 DOUB N N 1 A1DKJ C13 C12 SING N N 2 A1DKJ C13 N14 SING N N 3 A1DKJ C12 C11 SING N N 4 A1DKJ N14 C15 SING N N 5 A1DKJ C11 C10 SING N N 6 A1DKJ C15 C10 SING N N 7 A1DKJ C15 O16 DOUB N N 8 A1DKJ C10 N09 SING N N 9 A1DKJ N09 C08 SING N N 10 A1DKJ N09 C18 SING N N 11 A1DKJ C08 C07 SING N N 12 A1DKJ O19 C18 DOUB N N 13 A1DKJ C18 C06 SING N N 14 A1DKJ C07 C06 DOUB Y N 15 A1DKJ C07 C20 SING Y N 16 A1DKJ C06 C05 SING Y N 17 A1DKJ C20 C21 DOUB Y N 18 A1DKJ C05 C04 DOUB Y N 19 A1DKJ C21 C04 SING Y N 20 A1DKJ C04 O03 SING N N 21 A1DKJ O03 S02 SING N N 22 A1DKJ O33 S02 DOUB N N 23 A1DKJ S02 O01 DOUB N N 24 A1DKJ S02 F1 SING N N 25 A1DKJ C10 H101 SING N N 26 A1DKJ C05 H051 SING N N 27 A1DKJ C08 H082 SING N N 28 A1DKJ C08 H081 SING N N 29 A1DKJ C11 H111 SING N N 30 A1DKJ C11 H112 SING N N 31 A1DKJ C12 H122 SING N N 32 A1DKJ C12 H121 SING N N 33 A1DKJ C20 H201 SING N N 34 A1DKJ C21 H211 SING N N 35 A1DKJ N14 H141 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DKJ SMILES ACDLabs 14.52 "FS(=O)(=O)Oc1cc2C(=O)N(Cc2cc1)C1CCC(=O)NC1=O" A1DKJ InChI InChI 1.06 "InChI=1S/C13H11FN2O6S/c14-23(20,21)22-8-2-1-7-6-16(13(19)9(7)5-8)10-3-4-11(17)15-12(10)18/h1-2,5,10H,3-4,6H2,(H,15,17,18)/t10-/m0/s1" A1DKJ InChIKey InChI 1.06 RXYXBYLQECASPH-JTQLQIEISA-N A1DKJ SMILES_CANONICAL CACTVS 3.385 "F[S](=O)(=O)Oc1ccc2CN([C@H]3CCC(=O)NC3=O)C(=O)c2c1" A1DKJ SMILES CACTVS 3.385 "F[S](=O)(=O)Oc1ccc2CN([CH]3CCC(=O)NC3=O)C(=O)c2c1" A1DKJ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1OS(=O)(=O)F)C(=O)N(C2)[C@H]3CCC(=O)NC3=O" A1DKJ SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1OS(=O)(=O)F)C(=O)N(C2)C3CCC(=O)NC3=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DKJ "SYSTEMATIC NAME" ACDLabs 14.52 "2-[(3S)-2,6-dioxopiperidin-3-yl]-3-oxo-2,3-dihydro-1H-isoindol-5-yl sulfurofluoridate" A1DKJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-5-fluorosulfonyloxy-3-oxidanylidene-1~{H}-isoindole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DKJ "Create component" 2026-06-22 RCSB A1DKJ "Other modification" 2026-06-24 RCSB A1DKJ "Initial release" 2026-10-28 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DKJ _pdbx_chem_comp_pcm.modified_residue_id HIS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom S02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #