data_A1DL2 # _chem_comp.id A1DL2 _chem_comp.name "6-[({(2r,5S)-2-[(1S)-2-(3-fluoro-6-methoxy-1,5-naphthyridin-4-yl)-1-hydroxyethyl]-1,3-dioxan-5-yl}amino)methyl]-2H-pyrazino[2,3-b][1,4]oxazin-3(4H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H23 F N6 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-07-06 _chem_comp.pdbx_modified_date 2026-10-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 486.453 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DL2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 36UP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DL2 N1 N1 N 0 1 N N N N N N 109.496 109.104 118.188 -7.424 1.754 0.293 N1 A1DL2 1 A1DL2 N3 N2 N 0 1 N N N N N N 108.861 112.405 114.680 -2.772 -0.881 -0.252 N3 A1DL2 2 A1DL2 C4 C1 C 0 1 N N N N N N 108.648 113.214 115.880 -3.712 -1.268 0.808 C4 A1DL2 3 A1DL2 C5 C2 C 0 1 N N N N N N 109.532 113.086 113.562 -1.385 -1.149 0.152 C5 A1DL2 4 A1DL2 C6 C3 C 0 1 N N N N N N 110.311 112.113 112.686 -0.514 -1.335 -1.095 C6 A1DL2 5 A1DL2 C7 C4 C 0 1 N N N N N N 108.783 112.274 110.915 1.340 -0.347 0.057 C7 A1DL2 6 A1DL2 C8 C5 C 0 1 N N S N N N 109.461 112.162 109.538 2.794 -0.599 0.460 C8 A1DL2 7 A1DL2 C10 C6 C 0 1 Y N N N N N 109.217 110.860 107.321 5.116 -0.780 -0.393 C10 A1DL2 8 A1DL2 C13 C7 C 0 1 Y N N N N N 109.850 109.972 105.124 7.265 0.195 0.186 C13 A1DL2 9 A1DL2 C15 C8 C 0 1 Y N N N N N 111.294 108.080 104.974 7.492 2.566 0.212 C15 A1DL2 10 A1DL2 C17 C9 C 0 1 N N N N N N 112.184 107.123 108.386 4.217 3.932 -0.715 C17 A1DL2 11 A1DL2 C20 C10 C 0 1 Y N N N N N 109.452 113.151 118.294 -5.876 -1.978 -0.222 C20 A1DL2 12 A1DL2 C21 C11 C 0 1 Y N N N N N 109.840 111.181 119.350 -7.633 -0.529 -0.460 C21 A1DL2 13 A1DL2 C22 C12 C 0 1 N N N N N N 109.773 109.226 120.602 -9.630 0.696 -0.079 C22 A1DL2 14 A1DL2 C1 C13 C 0 1 N N N N N N 109.819 108.438 119.311 -8.762 1.902 0.178 C1 A1DL2 15 A1DL2 C11 C14 C 0 1 Y N N N N N 108.485 111.811 106.633 5.693 -2.007 -0.222 C11 A1DL2 16 A1DL2 C12 C15 C 0 1 Y N N N N N 108.456 111.818 105.236 7.035 -2.100 0.150 C12 A1DL2 17 A1DL2 C14 C16 C 0 1 Y N N N N N 110.554 109.029 104.352 8.063 1.340 0.388 C14 A1DL2 18 A1DL2 C16 C17 C 0 1 Y N N N N N 111.319 108.083 106.394 6.147 2.663 -0.162 C16 A1DL2 19 A1DL2 C18 C18 C 0 1 Y N N N N N 109.927 109.906 106.534 5.911 0.365 -0.191 C18 A1DL2 20 A1DL2 C19 C19 C 0 1 N N N N N N 108.531 113.810 112.671 -0.847 0.036 0.962 C19 A1DL2 21 A1DL2 C2 C20 C 0 1 Y N N N N N 109.467 110.476 118.182 -6.867 0.484 0.130 C2 A1DL2 22 A1DL2 C3 C21 C 0 1 Y N N N N N 109.072 112.460 117.117 -5.122 -0.979 0.359 C3 A1DL2 23 A1DL2 C9 C22 C 0 1 N N N N N N 109.266 110.823 108.834 3.668 -0.655 -0.795 C9 A1DL2 24 A1DL2 F1 F1 F 0 1 N N N N N N 107.768 112.761 107.272 4.965 -3.129 -0.412 F1 A1DL2 25 A1DL2 N2 N3 N 0 1 Y N N N N N 109.089 111.116 117.071 -5.631 0.232 0.524 N2 A1DL2 26 A1DL2 N4 N4 N 0 1 Y N N N N N 109.092 110.929 104.501 7.769 -1.031 0.343 N4 A1DL2 27 A1DL2 N5 N5 N 0 1 Y N N N N N 110.679 108.935 107.150 5.406 1.592 -0.349 N5 A1DL2 28 A1DL2 N6 N6 N 0 1 Y N N N N N 109.830 112.503 119.390 -7.116 -1.734 -0.620 N6 A1DL2 29 A1DL2 O1 O1 O 0 1 N N N N N N 110.140 107.258 119.307 -9.263 3.001 0.280 O1 A1DL2 30 A1DL2 O2 O2 O 0 1 N N N N N N 109.414 111.402 111.830 0.853 -1.463 -0.693 O2 A1DL2 31 A1DL2 O3 O3 O 0 1 N N N N N N 110.846 112.506 109.569 2.886 -1.841 1.160 O3 A1DL2 32 A1DL2 O4 O4 O 0 1 N N N N N N 112.075 107.108 106.955 5.594 3.889 -0.334 O4 A1DL2 33 A1DL2 O5 O5 O 0 1 N N N N N N 108.928 113.623 111.310 0.541 -0.178 1.234 O5 A1DL2 34 A1DL2 O6 O6 O 0 1 N N N N N N 110.244 110.567 120.497 -8.902 -0.260 -0.859 O6 A1DL2 35 A1DL2 H1 H1 H 0 1 N N N N N N 109.276 108.597 117.354 -6.859 2.519 0.482 H1 A1DL2 36 A1DL2 H2 H2 H 0 1 N N N N N N 107.967 112.093 114.358 -2.893 0.088 -0.507 H2 A1DL2 37 A1DL2 H4 H4 H 0 1 N N N N N N 109.239 114.139 115.801 -3.608 -2.333 1.015 H4 A1DL2 38 A1DL2 H5 H5 H 0 1 N N N N N N 107.580 113.467 115.960 -3.495 -0.700 1.712 H5 A1DL2 39 A1DL2 H6 H6 H 0 1 N N N N N N 110.236 113.828 113.965 -1.349 -2.053 0.760 H6 A1DL2 40 A1DL2 H7 H7 H 0 1 N N N N N N 110.849 111.397 113.325 -0.824 -2.235 -1.626 H7 A1DL2 41 A1DL2 H8 H8 H 0 1 N N N N N N 111.033 112.672 112.073 -0.624 -0.470 -1.750 H8 A1DL2 42 A1DL2 H9 H9 H 0 1 N N N N N N 107.719 112.016 110.808 1.283 0.555 -0.553 H9 A1DL2 43 A1DL2 H10 H10 H 0 1 N N N N N N 108.962 112.908 108.902 3.137 0.209 1.106 H10 A1DL2 44 A1DL2 H11 H11 H 0 1 N N N N N N 111.847 107.345 104.408 8.078 3.461 0.361 H11 A1DL2 45 A1DL2 H12 H12 H 0 1 N N N N N N 112.819 106.287 108.715 4.088 3.417 -1.667 H12 A1DL2 46 A1DL2 H13 H13 H 0 1 N N N N N N 112.633 108.074 108.709 3.613 3.443 0.048 H13 A1DL2 47 A1DL2 H14 H14 H 0 1 N N N N N N 111.183 107.020 108.831 3.901 4.971 -0.818 H14 A1DL2 48 A1DL2 H15 H15 H 0 1 N N N N N N 109.434 114.231 118.300 -5.453 -2.963 -0.354 H15 A1DL2 49 A1DL2 H16 H16 H 0 1 N N N N N N 108.730 109.255 120.949 -9.923 0.251 0.873 H16 A1DL2 50 A1DL2 H17 H17 H 0 1 N N N N N N 110.392 108.702 121.345 -10.521 1.001 -0.627 H17 A1DL2 51 A1DL2 H18 H18 H 0 1 N N N N N N 107.886 112.587 104.736 7.479 -3.075 0.282 H18 A1DL2 52 A1DL2 H19 H19 H 0 1 N N N N N N 110.505 109.062 103.274 9.099 1.249 0.677 H19 A1DL2 53 A1DL2 H20 H20 H 0 1 N N N N N N 108.525 114.883 112.913 -0.969 0.955 0.388 H20 A1DL2 54 A1DL2 H21 H21 H 0 1 N N N N N N 107.525 113.393 112.826 -1.397 0.116 1.900 H21 A1DL2 55 A1DL2 H22 H22 H 0 1 N N N N N N 108.318 110.393 109.189 3.383 -1.516 -1.398 H22 A1DL2 56 A1DL2 H23 H23 H 0 1 N N N N N N 110.099 110.167 109.126 3.530 0.258 -1.375 H23 A1DL2 57 A1DL2 H24 H24 H 0 1 N N N N N N 110.956 113.341 110.009 2.597 -2.606 0.644 H24 A1DL2 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DL2 C14 C15 SING Y N 1 A1DL2 C14 C13 DOUB Y N 2 A1DL2 N4 C13 SING Y N 3 A1DL2 N4 C12 DOUB Y N 4 A1DL2 C15 C16 DOUB Y N 5 A1DL2 C13 C18 SING Y N 6 A1DL2 C12 C11 SING Y N 7 A1DL2 C16 O4 SING N N 8 A1DL2 C16 N5 SING Y N 9 A1DL2 C18 N5 DOUB Y N 10 A1DL2 C18 C10 SING Y N 11 A1DL2 C11 F1 SING N N 12 A1DL2 C11 C10 DOUB Y N 13 A1DL2 O4 C17 SING N N 14 A1DL2 C10 C9 SING N N 15 A1DL2 C9 C8 SING N N 16 A1DL2 C8 O3 SING N N 17 A1DL2 C8 C7 SING N N 18 A1DL2 C7 O5 SING N N 19 A1DL2 C7 O2 SING N N 20 A1DL2 O5 C19 SING N N 21 A1DL2 O2 C6 SING N N 22 A1DL2 C19 C5 SING N N 23 A1DL2 C6 C5 SING N N 24 A1DL2 C5 N3 SING N N 25 A1DL2 N3 C4 SING N N 26 A1DL2 C4 C3 SING N N 27 A1DL2 N2 C3 SING Y N 28 A1DL2 N2 C2 DOUB Y N 29 A1DL2 C3 C20 DOUB Y N 30 A1DL2 C2 N1 SING N N 31 A1DL2 C2 C21 SING Y N 32 A1DL2 N1 C1 SING N N 33 A1DL2 C20 N6 SING Y N 34 A1DL2 O1 C1 DOUB N N 35 A1DL2 C1 C22 SING N N 36 A1DL2 C21 N6 DOUB Y N 37 A1DL2 C21 O6 SING N N 38 A1DL2 O6 C22 SING N N 39 A1DL2 N1 H1 SING N N 40 A1DL2 N3 H2 SING N N 41 A1DL2 C4 H4 SING N N 42 A1DL2 C4 H5 SING N N 43 A1DL2 C5 H6 SING N N 44 A1DL2 C6 H7 SING N N 45 A1DL2 C6 H8 SING N N 46 A1DL2 C7 H9 SING N N 47 A1DL2 C8 H10 SING N N 48 A1DL2 C15 H11 SING N N 49 A1DL2 C17 H12 SING N N 50 A1DL2 C17 H13 SING N N 51 A1DL2 C17 H14 SING N N 52 A1DL2 C20 H15 SING N N 53 A1DL2 C22 H16 SING N N 54 A1DL2 C22 H17 SING N N 55 A1DL2 C12 H18 SING N N 56 A1DL2 C14 H19 SING N N 57 A1DL2 C19 H20 SING N N 58 A1DL2 C19 H21 SING N N 59 A1DL2 C9 H22 SING N N 60 A1DL2 C9 H23 SING N N 61 A1DL2 O3 H24 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DL2 SMILES ACDLabs 14.52 "OC(Cc1c2nc(OC)ccc2ncc1F)C1OCC(NCc2cnc3OCC(=O)Nc3n2)CO1" A1DL2 InChI InChI 1.06 "InChI=1S/C22H23FN6O6/c1-32-18-3-2-15-19(29-18)13(14(23)7-25-15)4-16(30)22-34-8-12(9-35-22)24-5-11-6-26-21-20(27-11)28-17(31)10-33-21/h2-3,6-7,12,16,22,24,30H,4-5,8-10H2,1H3,(H,27,28,31)/t12-,16-,22-/m0/s1" A1DL2 InChIKey InChI 1.06 OQSUGFUSYFLCSY-IEBOFQNGSA-N A1DL2 SMILES_CANONICAL CACTVS 3.385 "COc1ccc2ncc(F)c(C[C@H](O)[C@H]3OC[C@@H](CO3)NCc4cnc5OCC(=O)Nc5n4)c2n1" A1DL2 SMILES CACTVS 3.385 "COc1ccc2ncc(F)c(C[CH](O)[CH]3OC[CH](CO3)NCc4cnc5OCC(=O)Nc5n4)c2n1" A1DL2 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COc1ccc2c(n1)c(c(cn2)F)C[C@@H](C3OCC(CO3)NCc4cnc5c(n4)NC(=O)CO5)O" A1DL2 SMILES "OpenEye OEToolkits" 3.1.0.0 "COc1ccc2c(n1)c(c(cn2)F)CC(C3OCC(CO3)NCc4cnc5c(n4)NC(=O)CO5)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DL2 "SYSTEMATIC NAME" ACDLabs 14.52 "6-[({(2r,5S)-2-[(1S)-2-(3-fluoro-6-methoxy-1,5-naphthyridin-4-yl)-1-hydroxyethyl]-1,3-dioxan-5-yl}amino)methyl]-2H-pyrazino[2,3-b][1,4]oxazin-3(4H)-one" A1DL2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "6-[[[2-[(1~{S})-2-(3-fluoranyl-6-methoxy-1,5-naphthyridin-4-yl)-1-oxidanyl-ethyl]-1,3-dioxan-5-yl]amino]methyl]-4~{H}-pyrazino[2,3-b][1,4]oxazin-3-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DL2 "Create component" 2026-07-06 RCSB A1DL2 "Initial release" 2026-10-07 RCSB #