data_A1DLL # _chem_comp.id A1DLL _chem_comp.name "7-{[(1S)-1-{4-[(1S)-2-cyclopropyl-1-(4-propanoylpiperazin-1-yl)ethyl]phenyl}ethyl]amino}-1-ethyl-1,4-dihydro-2H-pyrimido[4,5-d][1,3]oxazin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H38 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "7-{[(1S)-1-{4-[(1S)-2-cyclopropyl-1-(4-prop-2-enoylpiperazin-1-yl)ethyl]phenyl}ethyl]amino}-1-ethyl-1,4-dihydro-2H-pyrimido[4,5-d][1,3]oxazin-2-one bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-07-02 _chem_comp.pdbx_modified_date 2026-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.640 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DLL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 36TD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DLL O1 O1 O 0 1 N N N N N N 14.253 -2.774 5.591 8.145 1.517 1.290 O1 A1DLL 1 A1DLL C7 C1 C 0 1 N N N N N N 12.556 -2.836 8.513 5.183 1.491 2.863 C7 A1DLL 2 A1DLL O2 O2 O 0 1 N N N N N N 9.751 -4.789 18.750 -3.236 4.628 0.596 O2 A1DLL 3 A1DLL C6 C2 C 0 1 N N N N N N 12.122 -3.474 7.237 6.031 0.295 2.424 C6 A1DLL 4 A1DLL C1 C3 C 0 1 Y N N N N N 12.649 -7.321 8.762 3.362 -1.184 -0.410 C1 A1DLL 5 A1DLL N1 N1 N 0 1 Y N N N N N 12.445 -6.106 8.242 4.181 -0.618 0.467 N1 A1DLL 6 A1DLL C5 C4 C 0 1 N N N N N N 14.132 -3.941 5.872 7.356 1.023 0.509 C5 A1DLL 7 A1DLL C4 C5 C 0 1 N N N N N N 14.852 -6.241 5.388 7.163 0.020 -1.655 C4 A1DLL 8 A1DLL C3 C6 C 0 1 Y N N N N N 14.139 -6.661 6.636 5.788 -0.421 -1.230 C3 A1DLL 9 A1DLL C2 C7 C 0 1 Y N N N N N 13.197 -5.772 7.194 5.391 -0.228 0.093 C2 A1DLL 10 A1DLL N N2 N 0 1 Y N N N N N 13.552 -8.221 8.352 3.716 -1.383 -1.671 N A1DLL 11 A1DLL C C8 C 0 1 Y N N N N N 14.273 -7.863 7.286 4.913 -1.017 -2.111 C A1DLL 12 A1DLL O O3 O 0 1 N N N N N N 15.014 -4.806 5.337 7.574 1.133 -0.813 O A1DLL 13 A1DLL C10 C9 C 0 1 Y N N N N N 11.149 -5.700 11.146 -0.236 -1.995 -0.486 C10 A1DLL 14 A1DLL C11 C10 C 0 1 Y N N N N N 12.462 -5.507 11.552 -0.549 -2.084 0.858 C11 A1DLL 15 A1DLL C12 C11 C 0 1 Y N N N N N 12.819 -4.404 12.303 -1.850 -1.881 1.280 C12 A1DLL 16 A1DLL C13 C12 C 0 1 Y N N N N N 11.877 -3.450 12.665 -2.838 -1.590 0.358 C13 A1DLL 17 A1DLL C14 C13 C 0 1 Y N N N N N 10.566 -3.642 12.247 -2.525 -1.501 -0.985 C14 A1DLL 18 A1DLL C15 C14 C 0 1 Y N N N N N 10.209 -4.753 11.510 -1.225 -1.704 -1.407 C15 A1DLL 19 A1DLL C16 C15 C 0 1 N N S N N N 12.192 -2.238 13.518 -4.256 -1.369 0.818 C16 A1DLL 20 A1DLL C17 C16 C 0 1 N N N N N N 10.554 -2.849 15.367 -3.838 0.890 1.581 C17 A1DLL 21 A1DLL C18 C17 C 0 1 N N N N N N 10.397 -2.870 16.894 -4.360 2.329 1.511 C18 A1DLL 22 A1DLL C19 C18 C 0 1 N N N N N N 12.738 -3.544 17.130 -4.973 1.902 -0.900 C19 A1DLL 23 A1DLL C20 C19 C 0 1 N N N N N N 12.904 -3.538 15.612 -4.427 0.480 -0.735 C20 A1DLL 24 A1DLL C21 C20 C 0 1 N N N N N N 10.910 -4.758 18.377 -3.754 3.928 -0.247 C21 A1DLL 25 A1DLL C22 C21 C 0 1 N N N N N N 11.921 -5.731 18.956 -3.744 4.356 -1.692 C22 A1DLL 26 A1DLL C23 C22 C 0 1 N N N N N N 11.302 -6.731 19.913 -3.023 5.700 -1.821 C23 A1DLL 27 A1DLL C24 C23 C 0 1 N N N N N N 13.576 -1.609 13.262 -5.204 -2.229 -0.021 C24 A1DLL 28 A1DLL C25 C24 C 0 1 N N N N N N 13.591 -0.921 11.900 -6.627 -2.101 0.526 C25 A1DLL 29 A1DLL C26 C25 C 0 1 N N N N N N 12.865 0.361 11.717 -7.747 -2.798 -0.250 C26 A1DLL 30 A1DLL C27 C26 C 0 1 N N N N N N 14.355 0.345 11.724 -7.281 -3.362 1.095 C27 A1DLL 31 A1DLL C8 C27 C 0 1 N N S N N N 10.732 -6.905 10.327 1.183 -2.210 -0.945 C8 A1DLL 32 A1DLL C9 C28 C 0 1 N N N N N N 9.810 -7.838 11.103 1.472 -3.711 -1.021 C9 A1DLL 33 A1DLL N2 N3 N 0 1 N N N N N N 13.125 -4.418 6.702 6.273 0.371 0.982 N2 A1DLL 34 A1DLL N3 N4 N 0 1 N N N N N N 11.865 -7.677 9.795 2.104 -1.583 0.006 N3 A1DLL 35 A1DLL N4 N5 N 0 1 N N N N N N 11.977 -2.532 14.993 -4.608 0.048 0.657 N4 A1DLL 36 A1DLL N5 N6 N 0 1 N N N N N N 11.340 -3.821 17.502 -4.339 2.766 0.107 N5 A1DLL 37 A1DLL H35 H1 H 0 1 N N N N N N 11.774 -2.146 8.863 4.231 1.474 2.333 H35 A1DLL 38 A1DLL H34 H2 H 0 1 N N N N N N 12.726 -3.614 9.272 5.003 1.434 3.936 H34 A1DLL 39 A1DLL H33 H3 H 0 1 N N N N N N 13.489 -2.278 8.345 5.712 2.415 2.631 H33 A1DLL 40 A1DLL H32 H4 H 0 1 N N N N N N 11.948 -2.685 6.490 6.984 0.312 2.954 H32 A1DLL 41 A1DLL H31 H5 H 0 1 N N N N N N 11.185 -4.021 7.418 5.503 -0.630 2.656 H31 A1DLL 42 A1DLL H37 H6 H 0 1 N N N N N N 14.269 -6.568 4.514 7.865 -0.806 -1.538 H37 A1DLL 43 A1DLL H36 H7 H 0 1 N N N N N N 15.844 -6.715 5.365 7.140 0.336 -2.698 H36 A1DLL 44 A1DLL H38 H8 H 0 1 N N N N N N 15.007 -8.562 6.912 5.194 -1.178 -3.141 H38 A1DLL 45 A1DLL H23 H9 H 0 1 N N N N N N 13.216 -6.230 11.277 0.223 -2.312 1.578 H23 A1DLL 46 A1DLL H22 H10 H 0 1 N N N N N N 13.846 -4.282 12.613 -2.094 -1.951 2.330 H22 A1DLL 47 A1DLL H24 H11 H 0 1 N N N N N N 9.814 -2.910 12.503 -3.297 -1.273 -1.706 H24 A1DLL 48 A1DLL H25 H12 H 0 1 N N N N N N 9.179 -4.885 11.213 -0.980 -1.635 -2.457 H25 A1DLL 49 A1DLL H14 H13 H 0 1 N N N N N N 11.454 -1.469 13.246 -4.345 -1.649 1.868 H14 A1DLL 50 A1DLL H7 H14 H 0 1 N N N N N N 9.888 -2.082 14.944 -2.785 0.871 1.299 H7 A1DLL 51 A1DLL H8 H15 H 0 1 N N N N N N 10.283 -3.835 14.961 -3.949 0.512 2.597 H8 A1DLL 52 A1DLL H6 H16 H 0 1 N N N N N N 10.594 -1.863 17.291 -5.381 2.367 1.891 H6 A1DLL 53 A1DLL H5 H17 H 0 1 N N N N N N 9.369 -3.169 17.147 -3.720 2.980 2.107 H5 A1DLL 54 A1DLL H9 H18 H 0 1 N N N N N N 13.387 -4.321 17.561 -4.739 2.271 -1.899 H9 A1DLL 55 A1DLL H10 H19 H 0 1 N N N N N N 13.029 -2.561 17.529 -6.054 1.902 -0.754 H10 A1DLL 56 A1DLL H11 H20 H 0 1 N N N N N N 12.671 -4.538 15.217 -4.966 -0.196 -1.399 H11 A1DLL 57 A1DLL H12 H21 H 0 1 N N N N N N 13.943 -3.277 15.361 -3.366 0.467 -0.986 H12 A1DLL 58 A1DLL H1 H22 H 0 1 N N N N N N 12.390 -6.283 18.128 -3.225 3.607 -2.290 H1 A1DLL 59 A1DLL H2 H23 H 0 1 N N N N N N 12.689 -5.158 19.496 -4.769 4.458 -2.048 H2 A1DLL 60 A1DLL H39 H24 H 0 1 N N N N N N 12.083 -7.404 20.296 -3.543 6.449 -1.223 H39 A1DLL 61 A1DLL H4 H25 H 0 1 N N N N N N 10.836 -6.195 20.753 -1.998 5.598 -1.465 H4 A1DLL 62 A1DLL H3 H26 H 0 1 N N N N N N 10.537 -7.319 19.384 -3.016 6.010 -2.866 H3 A1DLL 63 A1DLL H15 H27 H 0 1 N N N N N N 14.344 -2.397 13.281 -5.180 -1.891 -1.057 H15 A1DLL 64 A1DLL H16 H28 H 0 1 N N N N N N 13.791 -0.869 14.047 -4.888 -3.271 0.028 H16 A1DLL 65 A1DLL H17 H29 H 0 1 N N N N N N 13.588 -1.601 11.035 -6.863 -1.151 1.006 H17 A1DLL 66 A1DLL H21 H30 H 0 1 N N N N N N 12.316 0.807 12.559 -8.719 -2.307 -0.280 H21 A1DLL 67 A1DLL H20 H31 H 0 1 N N N N N N 12.322 0.556 10.781 -7.470 -3.348 -1.149 H20 A1DLL 68 A1DLL H18 H32 H 0 1 N N N N N N 14.912 0.527 10.793 -6.697 -4.282 1.080 H18 A1DLL 69 A1DLL H19 H33 H 0 1 N N N N N N 14.906 0.778 12.572 -7.947 -3.241 1.949 H19 A1DLL 70 A1DLL H26 H34 H 0 1 N N N N N N 10.156 -6.527 9.469 1.317 -1.763 -1.930 H26 A1DLL 71 A1DLL H27 H35 H 0 1 N N N N N N 8.960 -7.265 11.503 0.787 -4.177 -1.729 H27 A1DLL 72 A1DLL H28 H36 H 0 1 N N N N N N 9.437 -8.626 10.432 2.499 -3.866 -1.354 H28 A1DLL 73 A1DLL H29 H37 H 0 1 N N N N N N 10.367 -8.296 11.934 1.338 -4.158 -0.036 H29 A1DLL 74 A1DLL H30 H38 H 0 1 N N N N N N 11.480 -8.564 9.539 1.832 -1.447 0.928 H30 A1DLL 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DLL O C4 SING N N 1 A1DLL O C5 SING N N 2 A1DLL C4 C3 SING N N 3 A1DLL O1 C5 DOUB N N 4 A1DLL C5 N2 SING N N 5 A1DLL C3 C2 DOUB Y N 6 A1DLL C3 C SING Y N 7 A1DLL N2 C2 SING N N 8 A1DLL N2 C6 SING N N 9 A1DLL C2 N1 SING Y N 10 A1DLL C6 C7 SING N N 11 A1DLL C N DOUB Y N 12 A1DLL N1 C1 DOUB Y N 13 A1DLL N C1 SING Y N 14 A1DLL C1 N3 SING N N 15 A1DLL N3 C8 SING N N 16 A1DLL C8 C9 SING N N 17 A1DLL C8 C10 SING N N 18 A1DLL C10 C15 DOUB Y N 19 A1DLL C10 C11 SING Y N 20 A1DLL C15 C14 SING Y N 21 A1DLL C11 C12 DOUB Y N 22 A1DLL C26 C27 SING N N 23 A1DLL C26 C25 SING N N 24 A1DLL C27 C25 SING N N 25 A1DLL C25 C24 SING N N 26 A1DLL C14 C13 DOUB Y N 27 A1DLL C12 C13 SING Y N 28 A1DLL C13 C16 SING N N 29 A1DLL C24 C16 SING N N 30 A1DLL C16 N4 SING N N 31 A1DLL N4 C17 SING N N 32 A1DLL N4 C20 SING N N 33 A1DLL C17 C18 SING N N 34 A1DLL C20 C19 SING N N 35 A1DLL C18 N5 SING N N 36 A1DLL C19 N5 SING N N 37 A1DLL N5 C21 SING N N 38 A1DLL C21 O2 DOUB N N 39 A1DLL C21 C22 SING N N 40 A1DLL C22 C23 SING N N 41 A1DLL C7 H35 SING N N 42 A1DLL C7 H34 SING N N 43 A1DLL C7 H33 SING N N 44 A1DLL C6 H32 SING N N 45 A1DLL C6 H31 SING N N 46 A1DLL C4 H37 SING N N 47 A1DLL C4 H36 SING N N 48 A1DLL C H38 SING N N 49 A1DLL C11 H23 SING N N 50 A1DLL C12 H22 SING N N 51 A1DLL C14 H24 SING N N 52 A1DLL C15 H25 SING N N 53 A1DLL C16 H14 SING N N 54 A1DLL C17 H7 SING N N 55 A1DLL C17 H8 SING N N 56 A1DLL C18 H6 SING N N 57 A1DLL C18 H5 SING N N 58 A1DLL C19 H9 SING N N 59 A1DLL C19 H10 SING N N 60 A1DLL C20 H11 SING N N 61 A1DLL C20 H12 SING N N 62 A1DLL C22 H1 SING N N 63 A1DLL C22 H2 SING N N 64 A1DLL C23 H39 SING N N 65 A1DLL C23 H4 SING N N 66 A1DLL C23 H3 SING N N 67 A1DLL C24 H15 SING N N 68 A1DLL C24 H16 SING N N 69 A1DLL C25 H17 SING N N 70 A1DLL C26 H21 SING N N 71 A1DLL C26 H20 SING N N 72 A1DLL C27 H18 SING N N 73 A1DLL C27 H19 SING N N 74 A1DLL C8 H26 SING N N 75 A1DLL C9 H27 SING N N 76 A1DLL C9 H28 SING N N 77 A1DLL C9 H29 SING N N 78 A1DLL N3 H30 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DLL SMILES ACDLabs 14.52 "CCC(=O)N1CCN(CC1)C(CC1CC1)c1ccc(cc1)C(C)Nc1ncc2COC(=O)N(CC)c2n1" A1DLL InChI InChI 1.06 "InChI=1S/C28H38N6O3/c1-4-25(35)33-14-12-32(13-15-33)24(16-20-6-7-20)22-10-8-21(9-11-22)19(3)30-27-29-17-23-18-37-28(36)34(5-2)26(23)31-27/h8-11,17,19-20,24H,4-7,12-16,18H2,1-3H3,(H,29,30,31)/t19-,24-/m0/s1" A1DLL InChIKey InChI 1.06 MKFDNMBZIUIMFA-CYFREDJKSA-N A1DLL SMILES_CANONICAL CACTVS 3.385 "CCN1C(=O)OCc2cnc(N[C@@H](C)c3ccc(cc3)[C@H](CC4CC4)N5CCN(CC5)C(=O)CC)nc12" A1DLL SMILES CACTVS 3.385 "CCN1C(=O)OCc2cnc(N[CH](C)c3ccc(cc3)[CH](CC4CC4)N5CCN(CC5)C(=O)CC)nc12" A1DLL SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)N1CCN(CC1)[C@@H](CC2CC2)c3ccc(cc3)[C@H](C)Nc4ncc5c(n4)N(C(=O)OC5)CC" A1DLL SMILES "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)N1CCN(CC1)C(CC2CC2)c3ccc(cc3)C(C)Nc4ncc5c(n4)N(C(=O)OC5)CC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DLL "SYSTEMATIC NAME" ACDLabs 14.52 "7-{[(1S)-1-{4-[(1S)-2-cyclopropyl-1-(4-propanoylpiperazin-1-yl)ethyl]phenyl}ethyl]amino}-1-ethyl-1,4-dihydro-2H-pyrimido[4,5-d][1,3]oxazin-2-one" A1DLL "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "7-[[(1~{S})-1-[4-[(1~{S})-2-cyclopropyl-1-(4-propanoylpiperazin-1-yl)ethyl]phenyl]ethyl]amino]-1-ethyl-4~{H}-pyrimido[4,5-d][1,3]oxazin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DLL "Create component" 2026-07-02 RCSB A1DLL "Modify PCM" 2026-07-02 RCSB A1DLL "Initial release" 2026-07-22 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1DLL _pdbx_chem_comp_synonyms.name "7-{[(1S)-1-{4-[(1S)-2-cyclopropyl-1-(4-prop-2-enoylpiperazin-1-yl)ethyl]phenyl}ethyl]amino}-1-ethyl-1,4-dihydro-2H-pyrimido[4,5-d][1,3]oxazin-2-one bound form" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1DLL _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C23 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #