data_A1DN3 # _chem_comp.id A1DN3 _chem_comp.name "(quinoxalin-2-yl)(thiomorpholin-4-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H13 N3 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-07-23 _chem_comp.pdbx_modified_date 2026-07-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 259.327 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DN3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 14UP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DN3 O1 O1 O 0 1 N N N N N N -15.535 27.528 1.361 -1.318 -2.673 0.301 O1 A1DN3 1 A1DN3 C1 C1 C 0 1 N N N N N N -15.422 27.682 0.146 -0.993 -1.550 -0.031 C1 A1DN3 2 A1DN3 C2 C2 C 0 1 Y N N N N N -16.683 27.658 -0.662 0.435 -1.154 -0.007 C2 A1DN3 3 A1DN3 C3 C3 C 0 1 Y N N N N N -17.934 27.762 0.066 1.433 -2.144 -0.015 C3 A1DN3 4 A1DN3 N1 N1 N 0 1 Y N N N N N -19.095 27.749 -0.528 2.703 -1.811 0.006 N1 A1DN3 5 A1DN3 C4 C4 C 0 1 Y N N N N N -19.093 27.648 -1.898 3.052 -0.520 0.035 C4 A1DN3 6 A1DN3 C5 C5 C 0 1 Y N N N N N -20.321 27.660 -2.589 4.404 -0.136 0.058 C5 A1DN3 7 A1DN3 C6 C6 C 0 1 Y N N N N N -20.345 27.584 -3.950 4.730 1.185 0.087 C6 A1DN3 8 A1DN3 C7 C7 C 0 1 Y N N N N N -19.144 27.452 -4.681 3.741 2.169 0.095 C7 A1DN3 9 A1DN3 C8 C8 C 0 1 Y N N N N N -17.939 27.426 -4.042 2.423 1.838 0.074 C8 A1DN3 10 A1DN3 C9 C9 C 0 1 Y N N N N N -17.882 27.533 -2.628 2.045 0.481 0.043 C9 A1DN3 11 A1DN3 N2 N2 N 0 1 Y N N N N N -16.671 27.516 -1.979 0.760 0.127 0.017 N2 A1DN3 12 A1DN3 N3 N3 N 0 1 N N N N N N -14.225 27.952 -0.428 -1.931 -0.667 -0.427 N3 A1DN3 13 A1DN3 C10 C10 C 0 1 N N N N N N -13.906 28.493 -1.748 -3.348 -1.012 -0.306 C10 A1DN3 14 A1DN3 C11 C11 C 0 1 N N N N N N -13.479 29.936 -1.605 -4.017 -0.076 0.707 C11 A1DN3 15 A1DN3 S1 S1 S 0 1 N N N N N N -11.955 30.105 -0.666 -3.789 1.641 0.158 S1 A1DN3 16 A1DN3 C12 C12 C 0 1 N N N N N N -12.508 29.161 0.757 -1.985 1.748 -0.036 C12 A1DN3 17 A1DN3 C13 C13 C 0 1 N N N N N N -12.985 27.796 0.327 -1.521 0.630 -0.968 C13 A1DN3 18 A1DN3 H1 H1 H 0 1 N N N N N N -17.902 27.854 1.142 1.153 -3.186 -0.039 H1 A1DN3 19 A1DN3 H2 H2 H 0 1 N N N N N N -21.247 27.730 -2.038 5.181 -0.886 0.052 H2 A1DN3 20 A1DN3 H3 H3 H 0 1 N N N N N N -21.289 27.625 -4.473 5.770 1.475 0.104 H3 A1DN3 21 A1DN3 H4 H4 H 0 1 N N N N N N -19.180 27.371 -5.757 4.028 3.210 0.119 H4 A1DN3 22 A1DN3 H5 H5 H 0 1 N N N N N N -17.028 27.324 -4.613 1.669 2.611 0.080 H5 A1DN3 23 A1DN3 H6 H6 H 0 1 N N N N N N -13.088 27.910 -2.196 -3.833 -0.904 -1.276 H6 A1DN3 24 A1DN3 H7 H7 H 0 1 N N N N N N -14.795 28.435 -2.394 -3.443 -2.043 0.035 H7 A1DN3 25 A1DN3 H8 H8 H 0 1 N N N N N N -13.326 30.361 -2.608 -5.082 -0.303 0.765 H8 A1DN3 26 A1DN3 H9 H9 H 0 1 N N N N N N -14.276 30.492 -1.089 -3.559 -0.211 1.687 H9 A1DN3 27 A1DN3 H10 H10 H 0 1 N N N N N N -11.673 29.047 1.464 -1.720 2.715 -0.464 H10 A1DN3 28 A1DN3 H11 H11 H 0 1 N N N N N N -13.334 29.696 1.248 -1.505 1.633 0.936 H11 A1DN3 29 A1DN3 H12 H12 H 0 1 N N N N N N -12.223 27.320 -0.307 -0.435 0.660 -1.056 H12 A1DN3 30 A1DN3 H13 H13 H 0 1 N N N N N N -13.167 27.171 1.214 -1.969 0.771 -1.952 H13 A1DN3 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DN3 O1 C1 DOUB N N 1 A1DN3 C1 C2 SING N N 2 A1DN3 C2 C3 DOUB Y N 3 A1DN3 C3 N1 SING Y N 4 A1DN3 N1 C4 DOUB Y N 5 A1DN3 C4 C5 SING Y N 6 A1DN3 C5 C6 DOUB Y N 7 A1DN3 C6 C7 SING Y N 8 A1DN3 C7 C8 DOUB Y N 9 A1DN3 C8 C9 SING Y N 10 A1DN3 C9 N2 DOUB Y N 11 A1DN3 C1 N3 SING N N 12 A1DN3 N3 C10 SING N N 13 A1DN3 C10 C11 SING N N 14 A1DN3 C11 S1 SING N N 15 A1DN3 S1 C12 SING N N 16 A1DN3 C12 C13 SING N N 17 A1DN3 C2 N2 SING Y N 18 A1DN3 N3 C13 SING N N 19 A1DN3 C4 C9 SING Y N 20 A1DN3 C3 H1 SING N N 21 A1DN3 C5 H2 SING N N 22 A1DN3 C6 H3 SING N N 23 A1DN3 C7 H4 SING N N 24 A1DN3 C8 H5 SING N N 25 A1DN3 C10 H6 SING N N 26 A1DN3 C10 H7 SING N N 27 A1DN3 C11 H8 SING N N 28 A1DN3 C11 H9 SING N N 29 A1DN3 C12 H10 SING N N 30 A1DN3 C12 H11 SING N N 31 A1DN3 C13 H12 SING N N 32 A1DN3 C13 H13 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DN3 SMILES ACDLabs 14.52 "O=C(c1cnc2ccccc2n1)N1CCSCC1" A1DN3 InChI InChI 1.06 "InChI=1S/C13H13N3OS/c17-13(16-5-7-18-8-6-16)12-9-14-10-3-1-2-4-11(10)15-12/h1-4,9H,5-8H2" A1DN3 InChIKey InChI 1.06 QAVZRUAJSAZGEL-UHFFFAOYSA-N A1DN3 SMILES_CANONICAL CACTVS 3.385 "O=C(N1CCSCC1)c2cnc3ccccc3n2" A1DN3 SMILES CACTVS 3.385 "O=C(N1CCSCC1)c2cnc3ccccc3n2" A1DN3 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)ncc(n2)C(=O)N3CCSCC3" A1DN3 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)ncc(n2)C(=O)N3CCSCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DN3 "SYSTEMATIC NAME" ACDLabs 14.52 "(quinoxalin-2-yl)(thiomorpholin-4-yl)methanone" A1DN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "quinoxalin-2-yl(thiomorpholin-4-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DN3 "Create component" 2026-07-23 RCSB A1DN3 "Initial release" 2026-08-05 RCSB #