data_A1DUC # _chem_comp.id A1DUC _chem_comp.name "(3S,5S)-5-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidine-3-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-20 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DUC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15OF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DUC C13 C1 C 0 1 N N N N N N -45.935 -29.212 1.858 -1.238 1.626 0.127 C13 A1DUC 1 A1DUC C11 C2 C 0 1 Y N N N N N -47.865 -29.015 4.465 1.903 -1.724 -0.040 C11 A1DUC 2 A1DUC C12 C3 C 0 1 Y N N N N N -46.499 -29.270 4.861 1.918 -0.264 0.034 C12 A1DUC 3 A1DUC C1 C4 C 0 1 N N N N N N -47.150 -29.665 -0.324 -3.578 2.489 0.294 C1 A1DUC 4 A1DUC C10 C5 C 0 1 Y N N N N N -48.571 -28.735 5.609 3.185 -2.125 -0.059 C10 A1DUC 5 A1DUC C2 C6 C 0 1 N N S N N N -46.281 -30.260 0.789 -2.711 1.229 0.252 C2 A1DUC 6 A1DUC C3 C7 C 0 1 N N N N N N -44.983 -30.880 0.225 -3.108 0.374 -0.954 C3 A1DUC 7 A1DUC C4 C8 C 0 1 N N S N N N -44.076 -31.473 1.334 -2.196 -0.854 -1.022 C4 A1DUC 8 A1DUC C5 C9 C 0 1 N N N N N N -44.639 -32.767 1.970 -2.387 -1.691 0.216 C5 A1DUC 9 A1DUC C6 C10 C 0 1 N N N N N N -43.802 -30.390 2.403 -0.738 -0.396 -1.110 C6 A1DUC 10 A1DUC C7 C11 C 0 1 Y N N N N N -45.248 -29.611 4.258 0.938 0.738 0.084 C7 A1DUC 11 A1DUC C8 C12 C 0 1 Y N N N N N -44.280 -29.592 6.374 2.618 2.317 0.168 C8 A1DUC 12 A1DUC C9 C13 C 0 1 Y N N N N N -46.455 -29.124 6.271 3.273 0.114 0.055 C9 A1DUC 13 A1DUC N1 N1 N 0 1 N N N N N N -45.073 -29.818 2.878 -0.407 0.417 0.067 N1 A1DUC 14 A1DUC N2 N2 N 0 1 Y N N N N N -44.157 -29.762 5.063 1.335 2.006 0.150 N2 A1DUC 15 A1DUC N3 N3 N 0 1 Y N N N N N -45.370 -29.274 7.063 3.571 1.411 0.122 N3 A1DUC 16 A1DUC N4 N4 N 0 1 Y N N N N N -47.719 -28.805 6.696 4.014 -1.034 -0.002 N4 A1DUC 17 A1DUC O1 O1 O 0 1 N N N N N N -45.346 -33.495 1.239 -3.171 -1.343 1.066 O1 A1DUC 18 A1DUC O2 O2 O 0 1 N N N N N N -44.366 -33.013 3.168 -1.685 -2.825 0.374 O2 A1DUC 19 A1DUC H14 H1 H 0 1 N N N N N N -45.408 -28.369 1.387 -1.096 2.211 -0.781 H14 A1DUC 20 A1DUC H15 H2 H 0 1 N N N N N N -46.861 -28.850 2.329 -0.949 2.223 0.992 H15 A1DUC 21 A1DUC H13 H3 H 0 1 N N N N N N -48.257 -29.040 3.459 1.030 -2.359 -0.070 H13 A1DUC 22 A1DUC H2 H4 H 0 1 N N N N N N -48.063 -29.234 0.113 -3.433 3.060 -0.623 H2 A1DUC 23 A1DUC H1 H5 H 0 1 N N N N N N -46.587 -28.878 -0.847 -4.627 2.205 0.383 H1 A1DUC 24 A1DUC H3 H6 H 0 1 N N N N N N -47.424 -30.456 -1.038 -3.293 3.099 1.151 H3 A1DUC 25 A1DUC H12 H7 H 0 1 N N N N N N -49.624 -28.498 5.653 3.513 -3.152 -0.110 H12 A1DUC 26 A1DUC H4 H8 H 0 1 N N N N N N -46.854 -31.063 1.275 -2.857 0.656 1.169 H4 A1DUC 27 A1DUC H6 H9 H 0 1 N N N N N N -45.252 -31.683 -0.477 -4.144 0.053 -0.848 H6 A1DUC 28 A1DUC H5 H10 H 0 1 N N N N N N -44.422 -30.099 -0.309 -3.000 0.960 -1.867 H5 A1DUC 29 A1DUC H7 H11 H 0 1 N N N N N N -43.112 -31.728 0.869 -2.447 -1.445 -1.903 H7 A1DUC 30 A1DUC H8 H12 H 0 1 N N N N N N -43.267 -30.842 3.251 -0.086 -1.268 -1.145 H8 A1DUC 31 A1DUC H9 H13 H 0 1 N N N N N N -43.185 -29.592 1.964 -0.598 0.198 -2.013 H9 A1DUC 32 A1DUC H10 H14 H 0 1 N N N N N N -43.379 -29.730 6.954 2.898 3.359 0.221 H10 A1DUC 33 A1DUC H11 H15 H 0 1 N N N N N N -47.984 -28.647 7.647 4.983 -1.071 -0.003 H11 A1DUC 34 A1DUC H16 H16 H 0 1 N N N N N N -44.777 -33.830 3.426 -1.841 -3.328 1.185 H16 A1DUC 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DUC C1 C2 SING N N 1 A1DUC C3 C2 SING N N 2 A1DUC C3 C4 SING N N 3 A1DUC C2 C13 SING N N 4 A1DUC O1 C5 DOUB N N 5 A1DUC C4 C5 SING N N 6 A1DUC C4 C6 SING N N 7 A1DUC C13 N1 SING N N 8 A1DUC C5 O2 SING N N 9 A1DUC C6 N1 SING N N 10 A1DUC N1 C7 SING N N 11 A1DUC C7 C12 DOUB Y N 12 A1DUC C7 N2 SING Y N 13 A1DUC C11 C12 SING Y N 14 A1DUC C11 C10 DOUB Y N 15 A1DUC C12 C9 SING Y N 16 A1DUC N2 C8 DOUB Y N 17 A1DUC C10 N4 SING Y N 18 A1DUC C9 N4 SING Y N 19 A1DUC C9 N3 DOUB Y N 20 A1DUC C8 N3 SING Y N 21 A1DUC C13 H14 SING N N 22 A1DUC C13 H15 SING N N 23 A1DUC C11 H13 SING N N 24 A1DUC C1 H2 SING N N 25 A1DUC C1 H1 SING N N 26 A1DUC C1 H3 SING N N 27 A1DUC C10 H12 SING N N 28 A1DUC C2 H4 SING N N 29 A1DUC C3 H6 SING N N 30 A1DUC C3 H5 SING N N 31 A1DUC C4 H7 SING N N 32 A1DUC C6 H8 SING N N 33 A1DUC C6 H9 SING N N 34 A1DUC C8 H10 SING N N 35 A1DUC N4 H11 SING N N 36 A1DUC O2 H16 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DUC SMILES ACDLabs 14.52 "O=C(O)C1CN(CC(C)C1)c1ncnc2[NH]ccc12" A1DUC InChI InChI 1.06 "InChI=1S/C13H16N4O2/c1-8-4-9(13(18)19)6-17(5-8)12-10-2-3-14-11(10)15-7-16-12/h2-3,7-9H,4-6H2,1H3,(H,18,19)(H,14,15,16)/t8-,9-/m0/s1" A1DUC InChIKey InChI 1.06 DRWWXUFDLUGMNF-IUCAKERBSA-N A1DUC SMILES_CANONICAL CACTVS 3.385 "C[C@H]1C[C@@H](CN(C1)c2ncnc3[nH]ccc23)C(O)=O" A1DUC SMILES CACTVS 3.385 "C[CH]1C[CH](CN(C1)c2ncnc3[nH]ccc23)C(O)=O" A1DUC SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1C[C@@H](CN(C1)c2c3cc[nH]c3ncn2)C(=O)O" A1DUC SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CC(CN(C1)c2c3cc[nH]c3ncn2)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DUC "SYSTEMATIC NAME" ACDLabs 14.52 "(3S,5S)-5-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidine-3-carboxylic acid" A1DUC "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S},5~{S})-5-methyl-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidine-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DUC "Create component" 2026-08-20 RCSB A1DUC "Initial release" 2026-11-04 RCSB #