data_A1DUD # _chem_comp.id A1DUD _chem_comp.name "2-{(2S)-1-[6-(methylamino)pyrimidin-4-yl]pyrrolidin-2-yl}propan-2-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H20 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-20 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 236.313 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DUD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15NJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DUD C11 C1 C 0 1 N N N N N N -42.090 -30.531 0.998 -0.146 -2.195 0.689 C11 A1DUD 1 A1DUD C12 C2 C 0 1 Y N N N N N -44.424 -29.699 6.223 1.046 1.171 -1.816 C12 A1DUD 2 A1DUD C1 C3 C 0 1 N N N N N N -49.084 -28.799 6.214 3.914 -0.608 1.560 C1 A1DUD 3 A1DUD C10 C4 C 0 1 N N N N N N -42.243 -30.961 3.443 -2.208 -2.497 -0.688 C10 A1DUD 4 A1DUD C2 C5 C 0 1 Y N N N N N -46.663 -29.231 6.244 2.443 0.313 -0.197 C2 A1DUD 5 A1DUD C3 C6 C 0 1 Y N N N N N -46.706 -29.375 4.843 1.370 0.259 0.688 C3 A1DUD 6 A1DUD C4 C7 C 0 1 Y N N N N N -45.495 -29.702 4.185 0.122 0.679 0.237 C4 A1DUD 7 A1DUD C5 C8 C 0 1 N N N N N N -45.986 -28.829 1.944 -1.702 1.929 1.056 C5 A1DUD 8 A1DUD C6 C9 C 0 1 N N N N N N -45.996 -29.425 0.541 -3.146 1.632 0.602 C6 A1DUD 9 A1DUD C7 C10 C 0 1 N N N N N N -44.870 -30.446 0.535 -3.005 0.284 -0.152 C7 A1DUD 10 A1DUD C8 C11 C 0 1 N N S N N N -44.425 -30.618 2.006 -1.914 -0.430 0.684 C8 A1DUD 11 A1DUD C9 C12 C 0 1 N N N N N N -42.923 -30.250 2.258 -1.193 -1.479 -0.166 C9 A1DUD 12 A1DUD N1 N1 N 0 1 N N N N N N -47.833 -28.912 6.938 3.704 -0.105 0.201 N1 A1DUD 13 A1DUD N2 N2 N 0 1 N N N N N N -45.409 -29.863 2.783 -0.978 0.644 1.079 N2 A1DUD 14 A1DUD N3 N3 N 0 1 Y N N N N N -44.355 -29.859 4.899 0.004 1.130 -1.011 N3 A1DUD 15 A1DUD N4 N4 N 0 1 Y N N N N N -45.513 -29.399 6.928 2.241 0.772 -1.430 N4 A1DUD 16 A1DUD O1 O1 O 0 1 N N N N N N -42.834 -28.856 2.488 -0.551 -0.838 -1.269 O1 A1DUD 17 A1DUD H18 H1 H 0 1 N N N N N N -41.039 -30.269 1.187 -0.636 -2.683 1.531 H18 A1DUD 18 A1DUD H16 H2 H 0 1 N N N N N N -42.161 -31.598 0.742 0.368 -2.942 0.084 H16 A1DUD 19 A1DUD H17 H3 H 0 1 N N N N N N -42.474 -29.927 0.163 0.578 -1.469 1.061 H17 A1DUD 20 A1DUD H20 H4 H 0 1 N N N N N N -43.505 -29.825 6.777 0.916 1.538 -2.824 H20 A1DUD 21 A1DUD H1 H5 H 0 1 N N N N N N -49.892 -28.544 6.915 3.655 0.169 2.280 H1 A1DUD 22 A1DUD H2 H6 H 0 1 N N N N N N -48.997 -28.010 5.453 3.282 -1.481 1.726 H2 A1DUD 23 A1DUD H3 H7 H 0 1 N N N N N N -49.312 -29.757 5.724 4.960 -0.887 1.687 H3 A1DUD 24 A1DUD H15 H8 H 0 1 N N N N N N -42.819 -30.777 4.362 -2.698 -2.986 0.154 H15 A1DUD 25 A1DUD H14 H9 H 0 1 N N N N N N -42.202 -32.043 3.247 -2.955 -1.987 -1.296 H14 A1DUD 26 A1DUD H13 H10 H 0 1 N N N N N N -41.222 -30.572 3.567 -1.695 -3.245 -1.293 H13 A1DUD 27 A1DUD H5 H11 H 0 1 N N N N N N -47.626 -29.241 4.293 1.500 -0.109 1.695 H5 A1DUD 28 A1DUD H6 H12 H 0 1 N N N N N N -45.370 -27.918 1.973 -1.224 2.611 0.353 H6 A1DUD 29 A1DUD H7 H13 H 0 1 N N N N N N -47.009 -28.591 2.271 -1.707 2.369 2.054 H7 A1DUD 30 A1DUD H9 H14 H 0 1 N N N N N N -45.813 -28.644 -0.211 -3.807 1.525 1.463 H9 A1DUD 31 A1DUD H8 H15 H 0 1 N N N N N N -46.960 -29.913 0.336 -3.509 2.414 -0.065 H8 A1DUD 32 A1DUD H11 H16 H 0 1 N N N N N N -45.228 -31.405 0.132 -3.941 -0.275 -0.131 H11 A1DUD 33 A1DUD H10 H17 H 0 1 N N N N N N -44.031 -30.082 -0.076 -2.670 0.443 -1.177 H10 A1DUD 34 A1DUD H12 H18 H 0 1 N N N N N N -44.538 -31.683 2.255 -2.355 -0.895 1.566 H12 A1DUD 35 A1DUD H4 H19 H 0 1 N N N N N N -47.675 -28.032 7.385 4.446 -0.064 -0.422 H4 A1DUD 36 A1DUD H19 H20 H 0 1 N N N N N N -43.336 -28.630 3.262 -0.183 -1.451 -1.921 H19 A1DUD 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DUD C7 C6 SING N N 1 A1DUD C7 C8 SING N N 2 A1DUD C6 C5 SING N N 3 A1DUD C11 C9 SING N N 4 A1DUD C5 N2 SING N N 5 A1DUD C8 C9 SING N N 6 A1DUD C8 N2 SING N N 7 A1DUD C9 O1 SING N N 8 A1DUD C9 C10 SING N N 9 A1DUD N2 C4 SING N N 10 A1DUD C4 C3 DOUB Y N 11 A1DUD C4 N3 SING Y N 12 A1DUD C3 C2 SING Y N 13 A1DUD N3 C12 DOUB Y N 14 A1DUD C1 N1 SING N N 15 A1DUD C12 N4 SING Y N 16 A1DUD C2 N4 DOUB Y N 17 A1DUD C2 N1 SING N N 18 A1DUD C11 H18 SING N N 19 A1DUD C11 H16 SING N N 20 A1DUD C11 H17 SING N N 21 A1DUD C12 H20 SING N N 22 A1DUD C1 H1 SING N N 23 A1DUD C1 H2 SING N N 24 A1DUD C1 H3 SING N N 25 A1DUD C10 H15 SING N N 26 A1DUD C10 H14 SING N N 27 A1DUD C10 H13 SING N N 28 A1DUD C3 H5 SING N N 29 A1DUD C5 H6 SING N N 30 A1DUD C5 H7 SING N N 31 A1DUD C6 H9 SING N N 32 A1DUD C6 H8 SING N N 33 A1DUD C7 H11 SING N N 34 A1DUD C7 H10 SING N N 35 A1DUD C8 H12 SING N N 36 A1DUD N1 H4 SING N N 37 A1DUD O1 H19 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DUD SMILES ACDLabs 14.52 "CC(C)(O)C1CCCN1c1ncnc(NC)c1" A1DUD InChI InChI 1.06 "InChI=1S/C12H20N4O/c1-12(2,17)9-5-4-6-16(9)11-7-10(13-3)14-8-15-11/h7-9,17H,4-6H2,1-3H3,(H,13,14,15)/t9-/m0/s1" A1DUD InChIKey InChI 1.06 IBQSUVDGXJBVIK-VIFPVBQESA-N A1DUD SMILES_CANONICAL CACTVS 3.385 "CNc1cc(ncn1)N2CCC[C@H]2C(C)(C)O" A1DUD SMILES CACTVS 3.385 "CNc1cc(ncn1)N2CCC[CH]2C(C)(C)O" A1DUD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)([C@@H]1CCCN1c2cc(ncn2)NC)O" A1DUD SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)(C1CCCN1c2cc(ncn2)NC)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DUD "SYSTEMATIC NAME" ACDLabs 14.52 "2-{(2S)-1-[6-(methylamino)pyrimidin-4-yl]pyrrolidin-2-yl}propan-2-ol" A1DUD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[(2~{S})-1-[6-(methylamino)pyrimidin-4-yl]pyrrolidin-2-yl]propan-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DUD "Create component" 2026-08-20 RCSB A1DUD "Initial release" 2026-11-04 RCSB #