data_A1DUG # _chem_comp.id A1DUG _chem_comp.name "{(3R)-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]oxan-3-yl}methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-20 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.281 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DUG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15OG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DUG C11 C1 C 0 1 N N N N N N -45.470 -31.499 0.382 3.321 -1.740 0.934 C11 A1DUG 1 A1DUG C12 C2 C 0 1 N N N N N N -44.461 -29.379 0.608 2.983 -0.227 -0.896 C12 A1DUG 2 A1DUG C1 C3 C 0 1 N N N N N N -42.711 -28.815 2.280 1.753 1.928 -0.590 C1 A1DUG 3 A1DUG C10 C4 C 0 1 N N N N N N -44.954 -31.980 1.743 2.168 -1.118 1.725 C10 A1DUG 4 A1DUG C2 C5 C 0 1 N N R N N N -43.990 -29.681 2.046 1.816 0.456 -0.178 C2 A1DUG 5 A1DUG C3 C6 C 0 1 Y N N N N N -45.150 -29.271 4.277 -0.634 0.228 0.000 C3 A1DUG 6 A1DUG C4 C7 C 0 1 Y N N N N N -44.127 -29.451 6.340 -1.816 1.720 1.305 C4 A1DUG 7 A1DUG C5 C8 C 0 1 Y N N N N N -46.336 -29.097 6.311 -3.027 0.046 0.292 C5 A1DUG 8 A1DUG C6 C9 C 0 1 Y N N N N N -48.466 -28.744 5.688 -3.540 -1.758 -0.939 C6 A1DUG 9 A1DUG C7 C10 C 0 1 Y N N N N N -47.753 -28.831 4.518 -2.211 -1.612 -1.068 C7 A1DUG 10 A1DUG C8 C11 C 0 1 Y N N N N N -46.390 -29.081 4.909 -1.836 -0.441 -0.277 C8 A1DUG 11 A1DUG C9 C12 C 0 1 N N N N N N -43.739 -31.185 2.236 2.029 0.357 1.336 C9 A1DUG 12 A1DUG N1 N1 N 0 1 N N N N N N -45.090 -29.246 2.901 0.562 -0.209 -0.540 N1 A1DUG 13 A1DUG N2 N2 N 0 1 Y N N N N N -44.031 -29.450 5.014 -0.675 1.296 0.791 N2 A1DUG 14 A1DUG N3 N3 N 0 1 Y N N N N N -45.235 -29.296 7.062 -2.965 1.124 1.073 N3 A1DUG 15 A1DUG N4 N4 N 0 1 Y N N N N N -47.611 -28.900 6.769 -4.039 -0.772 -0.128 N4 A1DUG 16 A1DUG O1 O1 O 0 1 N N N N N N -41.865 -29.223 3.348 1.436 2.020 -1.981 O1 A1DUG 17 A1DUG O2 O2 O 0 1 N N N N N N -45.666 -30.091 0.345 3.075 -1.586 -0.465 O2 A1DUG 18 A1DUG H13 H1 H 0 1 N N N N N N -46.429 -31.995 0.172 4.253 -1.240 1.196 H13 A1DUG 19 A1DUG H14 H2 H 0 1 N N N N N N -44.738 -31.774 -0.391 3.398 -2.800 1.176 H14 A1DUG 20 A1DUG H16 H3 H 0 1 N N N N N N -43.686 -29.694 -0.106 2.816 -0.197 -1.972 H16 A1DUG 21 A1DUG H15 H4 H 0 1 N N N N N N -44.642 -28.299 0.500 3.911 0.294 -0.657 H15 A1DUG 22 A1DUG H2 H5 H 0 1 N N N N N N -42.117 -28.836 1.354 0.984 2.436 -0.008 H2 A1DUG 23 A1DUG H3 H6 H 0 1 N N N N N N -43.036 -27.784 2.484 2.719 2.398 -0.406 H3 A1DUG 24 A1DUG H11 H7 H 0 1 N N N N N N -45.763 -31.878 2.481 1.242 -1.645 1.494 H11 A1DUG 25 A1DUG H12 H8 H 0 1 N N N N N N -44.669 -33.039 1.656 2.375 -1.195 2.793 H12 A1DUG 26 A1DUG H5 H9 H 0 1 N N N N N N -43.208 -29.593 6.890 -1.804 2.592 1.942 H5 A1DUG 27 A1DUG H7 H10 H 0 1 N N N N N N -49.531 -28.579 5.756 -4.127 -2.535 -1.405 H7 A1DUG 28 A1DUG H8 H11 H 0 1 N N N N N N -48.135 -28.732 3.513 -1.547 -2.238 -1.646 H8 A1DUG 29 A1DUG H9 H12 H 0 1 N N N N N N -43.573 -31.396 3.303 1.174 0.792 1.853 H9 A1DUG 30 A1DUG H10 H13 H 0 1 N N N N N N -42.850 -31.483 1.661 2.936 0.894 1.612 H10 A1DUG 31 A1DUG H4 H14 H 0 1 N N N N N N -45.237 -28.287 2.658 0.570 -0.956 -1.160 H4 A1DUG 32 A1DUG H6 H15 H 0 1 N N N N N N -47.883 -28.873 7.731 -4.973 -0.671 0.114 H6 A1DUG 33 A1DUG H1 H16 H 0 1 N N N N N N -41.121 -28.635 3.406 1.380 2.927 -2.312 H1 A1DUG 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DUG O2 C11 SING N N 1 A1DUG O2 C12 SING N N 2 A1DUG C11 C10 SING N N 3 A1DUG C12 C2 SING N N 4 A1DUG C10 C9 SING N N 5 A1DUG C2 C9 SING N N 6 A1DUG C2 C1 SING N N 7 A1DUG C2 N1 SING N N 8 A1DUG C1 O1 SING N N 9 A1DUG N1 C3 SING N N 10 A1DUG C3 C8 DOUB Y N 11 A1DUG C3 N2 SING Y N 12 A1DUG C7 C8 SING Y N 13 A1DUG C7 C6 DOUB Y N 14 A1DUG C8 C5 SING Y N 15 A1DUG N2 C4 DOUB Y N 16 A1DUG C6 N4 SING Y N 17 A1DUG C5 N4 SING Y N 18 A1DUG C5 N3 DOUB Y N 19 A1DUG C4 N3 SING Y N 20 A1DUG C11 H13 SING N N 21 A1DUG C11 H14 SING N N 22 A1DUG C12 H16 SING N N 23 A1DUG C12 H15 SING N N 24 A1DUG C1 H2 SING N N 25 A1DUG C1 H3 SING N N 26 A1DUG C10 H11 SING N N 27 A1DUG C10 H12 SING N N 28 A1DUG C4 H5 SING N N 29 A1DUG C6 H7 SING N N 30 A1DUG C7 H8 SING N N 31 A1DUG C9 H9 SING N N 32 A1DUG C9 H10 SING N N 33 A1DUG N1 H4 SING N N 34 A1DUG N4 H6 SING N N 35 A1DUG O1 H1 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DUG SMILES ACDLabs 14.52 "OCC1(Nc2ncnc3[NH]ccc23)CCCOC1" A1DUG InChI InChI 1.06 "InChI=1S/C12H16N4O2/c17-6-12(3-1-5-18-7-12)16-11-9-2-4-13-10(9)14-8-15-11/h2,4,8,17H,1,3,5-7H2,(H2,13,14,15,16)/t12-/m1/s1" A1DUG InChIKey InChI 1.06 MKKHCAOZTWLFTI-GFCCVEGCSA-N A1DUG SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(CCCOC1)Nc2ncnc3[nH]ccc23" A1DUG SMILES CACTVS 3.385 "OC[C]1(CCCOC1)Nc2ncnc3[nH]ccc23" A1DUG SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N[C@]3(CCCOC3)CO" A1DUG SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC3(CCCOC3)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DUG "SYSTEMATIC NAME" ACDLabs 14.52 "{(3R)-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]oxan-3-yl}methanol" A1DUG "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(3~{R})-3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)oxan-3-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DUG "Create component" 2026-08-20 RCSB A1DUG "Initial release" 2026-11-04 RCSB #