data_A1DUY # _chem_comp.id A1DUY _chem_comp.name "4-[(3S)-3-methylpiperazin-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-21 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 217.270 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DUY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15JL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DUY C11 C1 C 0 1 N N N N N N -46.377 -30.761 1.069 2.621 -1.516 0.666 C11 A1DUY 1 A1DUY C1 C2 C 0 1 N N N N N N -42.945 -29.506 0.012 3.442 0.043 -1.611 C1 A1DUY 2 A1DUY C10 C3 C 0 1 N N N N N N -46.828 -29.592 1.948 1.201 -0.979 0.866 C10 A1DUY 3 A1DUY C2 C4 C 0 1 N N S N N N -44.083 -29.888 0.963 3.312 0.633 -0.205 C2 A1DUY 4 A1DUY C3 C5 C 0 1 N N N N N N -44.468 -28.710 1.879 1.893 1.171 -0.006 C3 A1DUY 5 A1DUY C4 C6 C 0 1 Y N N N N N -45.621 -29.056 4.031 -0.369 0.526 -0.028 C4 A1DUY 6 A1DUY C5 C7 C 0 1 Y N N N N N -44.335 -29.312 5.943 -1.862 2.263 0.252 C5 A1DUY 7 A1DUY C6 C8 C 0 1 Y N N N N N -46.532 -29.055 6.241 -2.758 0.160 -0.015 C6 A1DUY 8 A1DUY C7 C9 C 0 1 Y N N N N N -48.764 -28.747 5.919 -2.921 -2.057 -0.318 C7 A1DUY 9 A1DUY C8 C10 C 0 1 Y N N N N N -48.197 -28.753 4.668 -1.603 -1.799 -0.317 C8 A1DUY 10 A1DUY C9 C11 C 0 1 Y N N N N N -46.779 -28.950 4.848 -1.455 -0.358 -0.122 C9 A1DUY 11 A1DUY N1 N1 N 0 1 N N N N N N -45.693 -28.970 2.635 0.932 0.066 -0.132 N1 A1DUY 12 A1DUY N2 N2 N 0 1 Y N N N N N -44.407 -29.233 4.612 -0.622 1.818 0.158 N2 A1DUY 13 A1DUY N3 N3 N 0 1 Y N N N N N -45.322 -29.244 6.837 -2.909 1.471 0.170 N3 A1DUY 14 A1DUY N4 N4 N 0 1 Y N N N N N -47.756 -28.929 6.857 -3.622 -0.893 -0.138 N4 A1DUY 15 A1DUY N5 N5 N 0 1 N N N N N N -45.257 -30.362 0.198 3.582 -0.412 0.792 N5 A1DUY 16 A1DUY H13 H1 H 0 1 N N N N N N -47.221 -31.088 0.444 2.833 -2.272 1.423 H13 A1DUY 17 A1DUY H14 H2 H 0 1 N N N N N N -46.054 -31.592 1.713 2.705 -1.961 -0.325 H14 A1DUY 18 A1DUY H1 H3 H 0 1 N N N N N N -42.081 -29.156 0.596 3.240 0.818 -2.350 H1 A1DUY 19 A1DUY H2 H4 H 0 1 N N N N N N -42.654 -30.384 -0.583 4.453 -0.339 -1.752 H2 A1DUY 20 A1DUY H3 H5 H 0 1 N N N N N N -43.283 -28.703 -0.660 2.726 -0.769 -1.731 H3 A1DUY 21 A1DUY H12 H6 H 0 1 N N N N N N -47.320 -28.838 1.316 0.485 -1.791 0.744 H12 A1DUY 22 A1DUY H11 H7 H 0 1 N N N N N N -47.541 -29.963 2.699 1.109 -0.559 1.867 H11 A1DUY 23 A1DUY H4 H8 H 0 1 N N N N N N -43.728 -30.709 1.603 4.029 1.446 -0.084 H4 A1DUY 24 A1DUY H6 H9 H 0 1 N N N N N N -43.646 -28.530 2.588 1.808 1.615 0.986 H6 A1DUY 25 A1DUY H5 H10 H 0 1 N N N N N N -44.619 -27.814 1.258 1.680 1.926 -0.762 H5 A1DUY 26 A1DUY H7 H11 H 0 1 N N N N N N -43.344 -29.449 6.350 -2.023 3.320 0.403 H7 A1DUY 27 A1DUY H9 H12 H 0 1 N N N N N N -49.815 -28.622 6.136 -3.362 -3.035 -0.442 H9 A1DUY 28 A1DUY H10 H13 H 0 1 N N N N N N -48.715 -28.633 3.728 -0.806 -2.518 -0.437 H10 A1DUY 29 A1DUY H8 H14 H 0 1 N N N N N N -47.900 -28.964 7.846 -4.589 -0.826 -0.103 H8 A1DUY 30 A1DUY H16 H15 H 0 1 N N N N N N -45.566 -29.626 -0.404 4.530 -0.748 0.716 H16 A1DUY 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DUY C1 C2 SING N N 1 A1DUY N5 C2 SING N N 2 A1DUY N5 C11 SING N N 3 A1DUY C2 C3 SING N N 4 A1DUY C11 C10 SING N N 5 A1DUY C3 N1 SING N N 6 A1DUY C10 N1 SING N N 7 A1DUY N1 C4 SING N N 8 A1DUY C4 N2 DOUB Y N 9 A1DUY C4 C9 SING Y N 10 A1DUY N2 C5 SING Y N 11 A1DUY C8 C9 SING Y N 12 A1DUY C8 C7 DOUB Y N 13 A1DUY C9 C6 DOUB Y N 14 A1DUY C7 N4 SING Y N 15 A1DUY C5 N3 DOUB Y N 16 A1DUY C6 N3 SING Y N 17 A1DUY C6 N4 SING Y N 18 A1DUY C11 H13 SING N N 19 A1DUY C11 H14 SING N N 20 A1DUY C1 H1 SING N N 21 A1DUY C1 H2 SING N N 22 A1DUY C1 H3 SING N N 23 A1DUY C10 H12 SING N N 24 A1DUY C10 H11 SING N N 25 A1DUY C2 H4 SING N N 26 A1DUY C3 H6 SING N N 27 A1DUY C3 H5 SING N N 28 A1DUY C5 H7 SING N N 29 A1DUY C7 H9 SING N N 30 A1DUY C8 H10 SING N N 31 A1DUY N4 H8 SING N N 32 A1DUY N5 H16 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DUY SMILES ACDLabs 14.52 "CC1CN(CCN1)c1ncnc2[NH]ccc12" A1DUY InChI InChI 1.06 "InChI=1S/C11H15N5/c1-8-6-16(5-4-12-8)11-9-2-3-13-10(9)14-7-15-11/h2-3,7-8,12H,4-6H2,1H3,(H,13,14,15)/t8-/m0/s1" A1DUY InChIKey InChI 1.06 ZDLREWSNGQOQKU-QMMMGPOBSA-N A1DUY SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CN(CCN1)c2ncnc3[nH]ccc23" A1DUY SMILES CACTVS 3.385 "C[CH]1CN(CCN1)c2ncnc3[nH]ccc23" A1DUY SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1CN(CCN1)c2c3cc[nH]c3ncn2" A1DUY SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CN(CCN1)c2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DUY "SYSTEMATIC NAME" ACDLabs 14.52 "4-[(3S)-3-methylpiperazin-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" A1DUY "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[(3~{S})-3-methylpiperazin-1-yl]-7~{H}-pyrrolo[2,3-d]pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DUY "Create component" 2026-08-21 RCSB A1DUY "Initial release" 2026-11-04 RCSB #