data_A1DVB # _chem_comp.id A1DVB _chem_comp.name "N-[(pyrazin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H10 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-21 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 254.247 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DVB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15EY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DVB C11 C1 C 0 1 Y N N N N N -48.312 -28.819 4.758 3.500 1.551 -0.025 C11 A1DVB 1 A1DVB C12 C2 C 0 1 Y N N N N N -46.906 -29.064 4.975 2.843 0.249 -0.001 C12 A1DVB 2 A1DVB C1 C3 C 0 1 N N N N N N -45.799 -29.465 2.705 0.388 0.766 -0.022 C1 A1DVB 3 A1DVB C10 C4 C 0 1 Y N N N N N -48.882 -28.632 5.992 4.825 1.320 -0.015 C10 A1DVB 4 A1DVB C2 C5 C 0 1 N N N N N N -44.660 -30.526 0.768 -1.996 1.270 -0.042 C2 A1DVB 5 A1DVB C3 C6 C 0 1 Y N N N N N -45.259 -31.880 0.432 -3.302 0.517 -0.033 C3 A1DVB 6 A1DVB C4 C7 C 0 1 Y N N N N N -46.333 -32.411 1.182 -3.958 0.287 1.163 C4 A1DVB 7 A1DVB C5 C8 C 0 1 Y N N N N N -46.341 -34.287 -0.144 -5.621 -0.812 0.038 C5 A1DVB 8 A1DVB C6 C9 C 0 1 Y N N N N N -45.267 -33.759 -0.894 -4.967 -0.577 -1.158 C6 A1DVB 9 A1DVB C7 C10 C 0 1 Y N N N N N -45.740 -29.329 4.199 1.513 -0.197 0.002 C7 A1DVB 10 A1DVB C8 C11 C 0 1 Y N N N N N -44.489 -29.411 6.158 2.287 -2.369 0.049 C8 A1DVB 11 A1DVB C9 C12 C 0 1 Y N N N N N -46.679 -28.995 6.375 3.880 -0.714 0.022 C9 A1DVB 12 A1DVB N1 N1 N 0 1 N N N N N N -44.819 -30.214 2.178 -0.883 0.317 -0.018 N1 A1DVB 13 A1DVB N2 N2 N 0 1 Y N N N N N -46.878 -33.615 0.898 -5.103 -0.373 1.171 N2 A1DVB 14 A1DVB N3 N3 N 0 1 Y N N N N N -44.719 -32.557 -0.608 -3.822 0.083 -1.167 N3 A1DVB 15 A1DVB N4 N4 N 0 1 Y N N N N N -44.547 -29.508 4.828 1.289 -1.510 0.028 N4 A1DVB 16 A1DVB N5 N5 N 0 1 Y N N N N N -45.489 -29.169 7.010 3.551 -1.998 0.047 N5 A1DVB 17 A1DVB N6 N6 N 0 1 Y N N N N N -47.897 -28.727 6.959 5.065 -0.027 0.013 N6 A1DVB 18 A1DVB O1 O1 O 0 1 N N N N N N -46.700 -28.969 2.035 0.611 1.960 -0.045 O1 A1DVB 19 A1DVB H10 H1 H 0 1 N N N N N N -48.819 -28.789 3.805 3.015 2.515 -0.051 H10 A1DVB 20 A1DVB H9 H2 H 0 1 N N N N N N -49.929 -28.442 6.178 5.588 2.085 -0.028 H9 A1DVB 21 A1DVB H3 H3 H 0 1 N N N N N N -43.588 -30.537 0.522 -1.934 1.878 -0.945 H3 A1DVB 22 A1DVB H2 H4 H 0 1 N N N N N N -45.165 -29.753 0.171 -1.941 1.915 0.835 H2 A1DVB 23 A1DVB H4 H5 H 0 1 N N N N N N -46.730 -31.838 2.007 -3.535 0.646 2.089 H4 A1DVB 24 A1DVB H5 H6 H 0 1 N N N N N N -46.744 -35.253 -0.410 -6.557 -1.352 0.045 H5 A1DVB 25 A1DVB H6 H7 H 0 1 N N N N N N -44.872 -34.332 -1.720 -5.392 -0.933 -2.085 H6 A1DVB 26 A1DVB H7 H8 H 0 1 N N N N N N -43.513 -29.545 6.600 2.059 -3.425 0.070 H7 A1DVB 27 A1DVB H1 H9 H 0 1 N N N N N N -44.140 -30.589 2.809 -1.061 -0.636 0.000 H1 A1DVB 28 A1DVB H8 H10 H 0 1 N N N N N N -48.048 -28.617 7.941 5.945 -0.435 0.025 H8 A1DVB 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DVB C6 N3 DOUB Y N 1 A1DVB C6 C5 SING Y N 2 A1DVB N3 C3 SING Y N 3 A1DVB C5 N2 DOUB Y N 4 A1DVB C3 C2 SING N N 5 A1DVB C3 C4 DOUB Y N 6 A1DVB C2 N1 SING N N 7 A1DVB N2 C4 SING Y N 8 A1DVB O1 C1 DOUB N N 9 A1DVB N1 C1 SING N N 10 A1DVB C1 C7 SING N N 11 A1DVB C7 N4 DOUB Y N 12 A1DVB C7 C12 SING Y N 13 A1DVB C11 C12 SING Y N 14 A1DVB C11 C10 DOUB Y N 15 A1DVB N4 C8 SING Y N 16 A1DVB C12 C9 DOUB Y N 17 A1DVB C10 N6 SING Y N 18 A1DVB C8 N5 DOUB Y N 19 A1DVB C9 N6 SING Y N 20 A1DVB C9 N5 SING Y N 21 A1DVB C11 H10 SING N N 22 A1DVB C10 H9 SING N N 23 A1DVB C2 H3 SING N N 24 A1DVB C2 H2 SING N N 25 A1DVB C4 H4 SING N N 26 A1DVB C5 H5 SING N N 27 A1DVB C6 H6 SING N N 28 A1DVB C8 H7 SING N N 29 A1DVB N1 H1 SING N N 30 A1DVB N6 H8 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DVB SMILES ACDLabs 14.52 "O=C(NCc1cnccn1)c1ncnc2[NH]ccc12" A1DVB InChI InChI 1.06 "InChI=1S/C12H10N6O/c19-12(16-6-8-5-13-3-4-14-8)10-9-1-2-15-11(9)18-7-17-10/h1-5,7H,6H2,(H,16,19)(H,15,17,18)" A1DVB InChIKey InChI 1.06 HBYGMBGSFKYGNL-UHFFFAOYSA-N A1DVB SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1cnccn1)c2ncnc3[nH]ccc23" A1DVB SMILES CACTVS 3.385 "O=C(NCc1cnccn1)c2ncnc3[nH]ccc23" A1DVB SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NCc3cnccn3" A1DVB SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NCc3cnccn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DVB "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(pyrazin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1DVB "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(pyrazin-2-ylmethyl)-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DVB "Create component" 2026-08-21 RCSB A1DVB "Initial release" 2026-11-04 RCSB #