data_A1DVC # _chem_comp.id A1DVC _chem_comp.name "N-cyclopropyl-N'-{4-[(2,2-dimethyl-5-oxopyrrolidin-1-yl)amino]-9H-pyrimido[4,5-b]indol-8-yl}urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-21 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 393.442 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DVC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15FA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DVC C13 C1 C 0 1 N N N N N N -52.463 -28.930 10.712 -7.395 0.398 -0.390 C13 A1DVC 1 A1DVC C18 C2 C 0 1 Y N N N N N -48.507 -29.403 4.108 -0.217 1.652 0.519 C18 A1DVC 2 A1DVC C17 C3 C 0 1 Y N N N N N -49.903 -29.348 4.281 -1.406 2.331 0.679 C17 A1DVC 3 A1DVC C16 C4 C 0 1 Y N N N N N -50.457 -29.235 5.567 -2.613 1.655 0.601 C16 A1DVC 4 A1DVC C15 C5 C 0 1 N N N N N N -53.174 -30.238 10.984 -8.584 -0.421 -0.896 C15 A1DVC 5 A1DVC C19 C6 C 0 1 Y N N N N N -47.642 -29.341 5.224 -0.227 0.279 0.276 C19 A1DVC 6 A1DVC C20 C7 C 0 1 Y N N N N N -46.217 -29.364 5.419 0.829 -0.723 0.064 C20 A1DVC 7 A1DVC C11 C8 C 0 1 Y N N N N N -49.617 -29.166 6.702 -2.640 0.292 0.361 C11 A1DVC 8 A1DVC C12 C9 C 0 1 N N N N N N -51.317 -29.072 8.537 -4.984 0.289 -0.056 C12 A1DVC 9 A1DVC C1 C10 C 0 1 N N N N N N -43.670 -27.367 1.871 4.507 2.375 -1.440 C1 A1DVC 10 A1DVC C10 C11 C 0 1 Y N N N N N -48.223 -29.224 6.521 -1.445 -0.410 0.196 C10 A1DVC 11 A1DVC C14 C12 C 0 1 N N N N N N -52.360 -29.591 12.070 -8.629 0.212 0.496 C14 A1DVC 12 A1DVC C2 C13 C 0 1 N N N N N N -43.621 -28.831 1.393 5.095 1.048 -0.956 C2 A1DVC 13 A1DVC C3 C14 C 0 1 N N N N N N -44.560 -29.038 0.192 5.126 0.034 -2.101 C3 A1DVC 14 A1DVC C4 C15 C 0 1 N N N N N N -42.182 -29.266 1.036 6.518 1.267 -0.396 C4 A1DVC 15 A1DVC C5 C16 C 0 1 N N N N N N -41.989 -30.668 1.628 6.558 0.253 0.771 C5 A1DVC 16 A1DVC C6 C17 C 0 1 N N N N N N -43.126 -30.772 2.627 5.105 0.065 1.148 C6 A1DVC 17 A1DVC C7 C18 C 0 1 Y N N N N N -45.060 -29.457 4.618 2.228 -0.685 0.023 C7 A1DVC 18 A1DVC C8 C19 C 0 1 Y N N N N N -43.781 -29.345 6.551 2.240 -2.956 -0.379 C8 A1DVC 19 A1DVC C9 C20 C 0 1 Y N N N N N -45.992 -29.266 6.817 0.181 -1.953 -0.132 C9 A1DVC 20 A1DVC N1 N1 N 0 1 N N N N N N -43.978 -29.755 2.459 4.309 0.524 0.167 N1 A1DVC 21 A1DVC N2 N2 N 0 1 N N N N N N -45.130 -29.565 3.226 2.909 0.504 0.211 N2 A1DVC 22 A1DVC N3 N3 N 0 1 Y N N N N N -43.845 -29.445 5.223 2.887 -1.819 -0.200 N3 A1DVC 23 A1DVC N4 N4 N 0 1 Y N N N N N -44.775 -29.251 7.430 0.927 -3.036 -0.349 N4 A1DVC 24 A1DVC N5 N5 N 0 1 Y N N N N N -47.208 -29.182 7.468 -1.174 -1.747 -0.050 N5 A1DVC 25 A1DVC N6 N6 N 0 1 N N N N N N -50.068 -29.061 8.045 -3.866 -0.382 0.285 N6 A1DVC 26 A1DVC N7 N7 N 0 1 N N N N N N -51.308 -28.959 9.873 -6.180 -0.331 -0.020 N7 A1DVC 27 A1DVC O1 O1 O 0 1 N N N N N N -43.209 -31.675 3.454 4.715 -0.428 2.186 O1 A1DVC 28 A1DVC O2 O2 O 0 1 N N N N N N -52.345 -29.166 7.871 -4.914 1.455 -0.396 O2 A1DVC 29 A1DVC H16 H1 H 0 1 N N N N N N -53.105 -28.038 10.661 -7.237 1.382 -0.832 H16 A1DVC 30 A1DVC H23 H2 H 0 1 N N N N N N -48.094 -29.493 3.114 0.721 2.184 0.576 H23 A1DVC 31 A1DVC H22 H3 H 0 1 N N N N N N -50.552 -29.393 3.419 -1.396 3.395 0.867 H22 A1DVC 32 A1DVC H21 H4 H 0 1 N N N N N N -51.530 -29.201 5.689 -3.539 2.196 0.729 H21 A1DVC 33 A1DVC H19 H5 H 0 1 N N N N N N -54.271 -30.261 11.060 -9.208 0.024 -1.671 H19 A1DVC 34 A1DVC H20 H6 H 0 1 N N N N N N -52.819 -31.165 10.510 -8.462 -1.502 -0.954 H20 A1DVC 35 A1DVC H1 H7 H 0 1 N N N N N N -42.994 -27.238 2.729 4.499 3.091 -0.618 H1 A1DVC 36 A1DVC H2 H8 H 0 1 N N N N N N -43.355 -26.703 1.052 5.115 2.766 -2.256 H2 A1DVC 37 A1DVC H3 H9 H 0 1 N N N N N N -44.697 -27.114 2.173 3.488 2.214 -1.791 H3 A1DVC 38 A1DVC H18 H10 H 0 1 N N N N N N -51.410 -30.045 12.389 -8.536 -0.454 1.354 H18 A1DVC 39 A1DVC H17 H11 H 0 1 N N N N N N -52.862 -29.142 12.939 -9.282 1.073 0.637 H17 A1DVC 40 A1DVC H4 H12 H 0 1 N N N N N N -45.578 -28.724 0.464 5.750 0.415 -2.908 H4 A1DVC 41 A1DVC H6 H13 H 0 1 N N N N N N -44.205 -28.437 -0.658 5.535 -0.910 -1.739 H6 A1DVC 42 A1DVC H5 H14 H 0 1 N N N N N N -44.567 -30.102 -0.089 4.113 -0.127 -2.470 H5 A1DVC 43 A1DVC H7 H15 H 0 1 N N N N N N -42.054 -29.294 -0.056 7.273 1.030 -1.145 H7 A1DVC 44 A1DVC H8 H16 H 0 1 N N N N N N -41.454 -28.566 1.473 6.641 2.287 -0.030 H8 A1DVC 45 A1DVC H9 H17 H 0 1 N N N N N N -42.073 -31.441 0.850 6.991 -0.691 0.440 H9 A1DVC 46 A1DVC H10 H18 H 0 1 N N N N N N -41.013 -30.756 2.128 7.121 0.659 1.611 H10 A1DVC 47 A1DVC H12 H19 H 0 1 N N N N N N -42.786 -29.340 6.971 2.811 -3.855 -0.557 H12 A1DVC 48 A1DVC H11 H20 H 0 1 N N N N N N -45.555 -28.722 2.897 2.417 1.325 0.372 H11 A1DVC 49 A1DVC H13 H21 H 0 1 N N N N N N -47.336 -29.104 8.457 -1.846 -2.440 -0.149 H13 A1DVC 50 A1DVC H14 H22 H 0 1 N N N N N N -49.344 -28.964 8.728 -3.910 -1.332 0.477 H14 A1DVC 51 A1DVC H15 H23 H 0 1 N N N N N N -50.416 -28.889 10.320 -6.236 -1.261 0.251 H15 A1DVC 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DVC C3 C2 SING N N 1 A1DVC C4 C2 SING N N 2 A1DVC C4 C5 SING N N 3 A1DVC C2 C1 SING N N 4 A1DVC C2 N1 SING N N 5 A1DVC C5 C6 SING N N 6 A1DVC N1 C6 SING N N 7 A1DVC N1 N2 SING N N 8 A1DVC C6 O1 DOUB N N 9 A1DVC N2 C7 SING N N 10 A1DVC C18 C17 DOUB Y N 11 A1DVC C18 C19 SING Y N 12 A1DVC C17 C16 SING Y N 13 A1DVC C7 N3 DOUB Y N 14 A1DVC C7 C20 SING Y N 15 A1DVC N3 C8 SING Y N 16 A1DVC C19 C20 SING Y N 17 A1DVC C19 C10 DOUB Y N 18 A1DVC C20 C9 DOUB Y N 19 A1DVC C16 C11 DOUB Y N 20 A1DVC C10 C11 SING Y N 21 A1DVC C10 N5 SING Y N 22 A1DVC C8 N4 DOUB Y N 23 A1DVC C11 N6 SING N N 24 A1DVC C9 N4 SING Y N 25 A1DVC C9 N5 SING Y N 26 A1DVC O2 C12 DOUB N N 27 A1DVC N6 C12 SING N N 28 A1DVC C12 N7 SING N N 29 A1DVC N7 C13 SING N N 30 A1DVC C13 C15 SING N N 31 A1DVC C13 C14 SING N N 32 A1DVC C15 C14 SING N N 33 A1DVC C13 H16 SING N N 34 A1DVC C18 H23 SING N N 35 A1DVC C17 H22 SING N N 36 A1DVC C16 H21 SING N N 37 A1DVC C15 H19 SING N N 38 A1DVC C15 H20 SING N N 39 A1DVC C1 H1 SING N N 40 A1DVC C1 H2 SING N N 41 A1DVC C1 H3 SING N N 42 A1DVC C14 H18 SING N N 43 A1DVC C14 H17 SING N N 44 A1DVC C3 H4 SING N N 45 A1DVC C3 H6 SING N N 46 A1DVC C3 H5 SING N N 47 A1DVC C4 H7 SING N N 48 A1DVC C4 H8 SING N N 49 A1DVC C5 H9 SING N N 50 A1DVC C5 H10 SING N N 51 A1DVC C8 H12 SING N N 52 A1DVC N2 H11 SING N N 53 A1DVC N5 H13 SING N N 54 A1DVC N6 H14 SING N N 55 A1DVC N7 H15 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DVC SMILES ACDLabs 14.52 "O=C(NC1CC1)Nc1cccc2c3c(ncnc3[NH]c21)NN1C(=O)CCC1(C)C" A1DVC InChI InChI 1.06 "InChI=1S/C20H23N7O2/c1-20(2)9-8-14(28)27(20)26-18-15-12-4-3-5-13(24-19(29)23-11-6-7-11)16(12)25-17(15)21-10-22-18/h3-5,10-11H,6-9H2,1-2H3,(H2,23,24,29)(H2,21,22,25,26)" A1DVC InChIKey InChI 1.06 BWMBRNBBGBZHFO-UHFFFAOYSA-N A1DVC SMILES_CANONICAL CACTVS 3.385 "CC1(C)CCC(=O)N1Nc2ncnc3[nH]c4c(NC(=O)NC5CC5)cccc4c23" A1DVC SMILES CACTVS 3.385 "CC1(C)CCC(=O)N1Nc2ncnc3[nH]c4c(NC(=O)NC5CC5)cccc4c23" A1DVC SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1(CCC(=O)N1Nc2c3c4cccc(c4[nH]c3ncn2)NC(=O)NC5CC5)C" A1DVC SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1(CCC(=O)N1Nc2c3c4cccc(c4[nH]c3ncn2)NC(=O)NC5CC5)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DVC "SYSTEMATIC NAME" ACDLabs 14.52 "N-cyclopropyl-N'-{4-[(2,2-dimethyl-5-oxopyrrolidin-1-yl)amino]-9H-pyrimido[4,5-b]indol-8-yl}urea" A1DVC "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-cyclopropyl-3-[4-[(2,2-dimethyl-5-oxidanylidene-pyrrolidin-1-yl)amino]-9~{H}-pyrimido[4,5-b]indol-8-yl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DVC "Create component" 2026-08-21 RCSB A1DVC "Initial release" 2026-11-04 RCSB #