data_A1DVD # _chem_comp.id A1DVD _chem_comp.name "N-[(1R,4S)-4-(hydroxymethyl)cyclopent-2-en-1-yl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-21 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.276 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DVD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15FS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DVD C13 C1 C 0 1 Y N N N N N -47.017 -29.161 5.006 -2.633 0.238 0.041 C13 A1DVD 1 A1DVD C11 C2 C 0 1 Y N N N N N -48.916 -28.719 6.151 -4.586 1.285 0.443 C11 A1DVD 2 A1DVD C12 C3 C 0 1 Y N N N N N -48.436 -28.915 4.881 -3.274 1.527 0.271 C12 A1DVD 3 A1DVD C1 C4 C 0 1 N N N N N N -46.099 -29.563 2.657 -0.200 0.774 -0.262 C1 A1DVD 4 A1DVD C10 C5 C 0 1 Y N N N N N -46.694 -29.094 6.390 -3.664 -0.730 0.096 C10 A1DVD 5 A1DVD C2 C6 C 0 1 N N R N N N -45.336 -30.822 0.646 2.162 1.296 -0.556 C2 A1DVD 6 A1DVD C3 C7 C 0 1 N N N N N N -43.931 -31.044 0.160 2.732 1.537 0.823 C3 A1DVD 7 A1DVD C4 C8 C 0 1 N N N N N N -43.794 -32.187 -0.507 3.849 0.882 0.990 C4 A1DVD 8 A1DVD C5 C9 C 0 1 N N S N N N -45.064 -33.000 -0.541 4.209 0.096 -0.249 C5 A1DVD 9 A1DVD C6 C10 C 0 1 N N N N N N -44.846 -34.421 0.001 3.873 -1.384 -0.057 C6 A1DVD 10 A1DVD C7 C11 C 0 1 N N N N N N -46.051 -32.161 0.310 3.336 0.707 -1.372 C7 A1DVD 11 A1DVD C8 C12 C 0 1 Y N N N N N -45.917 -29.442 4.146 -1.319 -0.195 -0.195 C8 A1DVD 12 A1DVD C9 C13 C 0 1 Y N N N N N -44.533 -29.518 6.012 -2.097 -2.364 -0.299 C9 A1DVD 13 A1DVD N1 N1 N 0 1 N N N N N N -45.340 -30.506 2.071 1.055 0.338 -0.490 N1 A1DVD 14 A1DVD N2 N2 N 0 1 Y N N N N N -44.682 -29.618 4.686 -1.105 -1.499 -0.358 N2 A1DVD 15 A1DVD N3 N3 N 0 1 Y N N N N N -45.463 -29.273 6.941 -3.347 -2.004 -0.084 N3 A1DVD 16 A1DVD N4 N4 N 0 1 Y N N N N N -47.872 -28.825 7.054 -4.832 -0.057 0.341 N4 A1DVD 17 A1DVD O1 O1 O 0 1 N N N N N N -46.903 -28.869 2.037 -0.414 1.960 -0.111 O1 A1DVD 18 A1DVD O2 O2 O 0 1 N N N N N N -46.043 -35.163 -0.043 4.718 -1.938 0.954 O2 A1DVD 19 A1DVD H13 H1 H 0 1 N N N N N N -49.945 -28.514 6.406 -5.335 2.039 0.635 H13 A1DVD 20 A1DVD H14 H2 H 0 1 N N N N N N -49.008 -28.890 3.965 -2.788 2.491 0.299 H14 A1DVD 21 A1DVD H2 H3 H 0 1 N N N N N N -45.805 -30.009 0.072 1.825 2.234 -0.997 H2 A1DVD 22 A1DVD H3 H4 H 0 1 N N N N N N -43.121 -30.351 0.333 2.276 2.168 1.571 H3 A1DVD 23 A1DVD H4 H5 H 0 1 N N N N N N -42.872 -32.499 -0.974 4.438 0.901 1.895 H4 A1DVD 24 A1DVD H5 H6 H 0 1 N N N N N N -45.438 -33.058 -1.574 5.268 0.217 -0.480 H5 A1DVD 25 A1DVD H6 H7 H 0 1 N N N N N N -44.085 -34.928 -0.611 2.831 -1.483 0.246 H6 A1DVD 26 A1DVD H7 H8 H 0 1 N N N N N N -44.498 -34.360 1.043 4.031 -1.917 -0.995 H7 A1DVD 27 A1DVD H10 H9 H 0 1 N N N N N N -46.971 -31.965 -0.261 2.987 -0.063 -2.060 H10 A1DVD 28 A1DVD H9 H10 H 0 1 N N N N N N -46.302 -32.698 1.237 3.875 1.491 -1.905 H9 A1DVD 29 A1DVD H11 H11 H 0 1 N N N N N N -43.527 -29.653 6.381 -1.878 -3.412 -0.441 H11 A1DVD 30 A1DVD H1 H12 H 0 1 N N N N N N -44.728 -31.034 2.660 1.225 -0.609 -0.610 H1 A1DVD 31 A1DVD H12 H13 H 0 1 N N N N N N -47.960 -28.721 8.045 -5.704 -0.472 0.428 H12 A1DVD 32 A1DVD H8 H14 H 0 1 N N N N N N -45.887 -36.037 0.296 4.560 -2.876 1.128 H8 A1DVD 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DVD C5 C4 SING N N 1 A1DVD C5 C6 SING N N 2 A1DVD C5 C7 SING N N 3 A1DVD C4 C3 DOUB N N 4 A1DVD O2 C6 SING N N 5 A1DVD C3 C2 SING N N 6 A1DVD C7 C2 SING N N 7 A1DVD C2 N1 SING N N 8 A1DVD O1 C1 DOUB N N 9 A1DVD N1 C1 SING N N 10 A1DVD C1 C8 SING N N 11 A1DVD C8 N2 DOUB Y N 12 A1DVD C8 C13 SING Y N 13 A1DVD N2 C9 SING Y N 14 A1DVD C12 C13 SING Y N 15 A1DVD C12 C11 DOUB Y N 16 A1DVD C13 C10 DOUB Y N 17 A1DVD C9 N3 DOUB Y N 18 A1DVD C11 N4 SING Y N 19 A1DVD C10 N3 SING Y N 20 A1DVD C10 N4 SING Y N 21 A1DVD C11 H13 SING N N 22 A1DVD C12 H14 SING N N 23 A1DVD C2 H2 SING N N 24 A1DVD C3 H3 SING N N 25 A1DVD C4 H4 SING N N 26 A1DVD C5 H5 SING N N 27 A1DVD C6 H6 SING N N 28 A1DVD C6 H7 SING N N 29 A1DVD C7 H10 SING N N 30 A1DVD C7 H9 SING N N 31 A1DVD C9 H11 SING N N 32 A1DVD N1 H1 SING N N 33 A1DVD N4 H12 SING N N 34 A1DVD O2 H8 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DVD SMILES ACDLabs 14.52 "OCC1C=CC(C1)NC(=O)c1ncnc2[NH]ccc12" A1DVD InChI InChI 1.06 "InChI=1S/C13H14N4O2/c18-6-8-1-2-9(5-8)17-13(19)11-10-3-4-14-12(10)16-7-15-11/h1-4,7-9,18H,5-6H2,(H,17,19)(H,14,15,16)/t8-,9+/m1/s1" A1DVD InChIKey InChI 1.06 UHDDUEZLCZECSR-BDAKNGLRSA-N A1DVD SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1C[C@@H](NC(=O)c2ncnc3[nH]ccc23)C=C1" A1DVD SMILES CACTVS 3.385 "OC[CH]1C[CH](NC(=O)c2ncnc3[nH]ccc23)C=C1" A1DVD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N[C@@H]3C[C@@H](C=C3)CO" A1DVD SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC3CC(C=C3)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DVD "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(1R,4S)-4-(hydroxymethyl)cyclopent-2-en-1-yl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1DVD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(1~{R},4~{S})-4-(hydroxymethyl)cyclopent-2-en-1-yl]-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DVD "Create component" 2026-08-21 RCSB A1DVD "Initial release" 2026-11-04 RCSB #