data_A1DVK # _chem_comp.id A1DVK _chem_comp.name "N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H12 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-21 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 280.303 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DVK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15FW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DVK C11 C1 C 0 1 Y N N N N N -46.658 -29.078 5.160 -3.101 0.390 -0.020 C11 A1DVK 1 A1DVK C1 C2 C 0 1 N N N N N N -45.324 -29.319 2.992 -0.624 0.180 -0.355 C1 A1DVK 2 A1DVK C10 C3 C 0 1 Y N N N N N -48.019 -28.765 4.805 -3.376 1.816 -0.145 C10 A1DVK 3 A1DVK C2 C4 C 0 1 N N R N N N -43.695 -29.307 1.105 1.782 -0.021 -0.681 C2 A1DVK 4 A1DVK C3 C5 C 0 1 N N N N N N -44.235 -30.581 0.418 2.703 -1.077 -1.318 C3 A1DVK 5 A1DVK C4 C6 C 0 1 N N N N N N -43.155 -31.659 0.263 4.143 -0.503 -1.260 C4 A1DVK 6 A1DVK C5 C7 C 0 1 N N N N N N -42.166 -29.242 1.013 2.414 0.446 0.645 C5 A1DVK 7 A1DVK C6 C8 C 0 1 Y N N N N N -45.428 -29.328 4.490 -1.954 -0.415 -0.090 C6 A1DVK 8 A1DVK C7 C9 C 0 1 Y N N N N N -44.405 -29.606 6.559 -3.275 -2.260 0.323 C7 A1DVK 9 A1DVK C8 C10 C 0 1 Y N N N N N -46.588 -29.128 6.579 -4.348 -0.230 0.236 C8 A1DVK 10 A1DVK C9 C11 C 0 1 Y N N N N N -48.721 -28.644 5.978 -4.701 1.975 0.032 C9 A1DVK 11 A1DVK N1 N1 N 0 1 N N N N N N -44.070 -29.297 2.510 0.467 -0.610 -0.419 N1 A1DVK 12 A1DVK N2 N2 N 0 1 Y N N N N N -44.318 -29.593 5.227 -2.093 -1.727 0.087 N2 A1DVK 13 A1DVK N3 N3 N 0 1 Y N N N N N -45.479 -29.392 7.324 -4.380 -1.546 0.394 N3 A1DVK 14 A1DVK N4 N4 N 0 1 Y N N N N N -47.858 -28.856 7.040 -5.291 0.762 0.260 N4 A1DVK 15 A1DVK O1 O1 O 0 1 N N N N N N -46.332 -29.335 2.284 -0.515 1.380 -0.514 O1 A1DVK 16 A1DVK O2 O2 O 0 1 N N N N N N -41.364 -31.480 2.288 4.685 -0.757 1.338 O2 A1DVK 17 A1DVK O3 O3 O 0 1 N N N N N N -40.559 -31.097 -0.112 4.845 1.494 0.360 O3 A1DVK 18 A1DVK S1 S1 S 0 1 N N N N N N -41.594 -30.975 0.925 4.214 0.222 0.422 S1 A1DVK 19 A1DVK H12 H1 H 0 1 N N N N N N -48.412 -28.648 3.806 -2.655 2.595 -0.341 H12 A1DVK 20 A1DVK H2 H2 H 0 1 N N N N N N -44.119 -28.427 0.598 1.676 0.828 -1.356 H2 A1DVK 21 A1DVK H4 H3 H 0 1 N N N N N N -44.613 -30.312 -0.580 2.649 -2.008 -0.755 H4 A1DVK 22 A1DVK H3 H4 H 0 1 N N N N N N -45.058 -30.988 1.024 2.412 -1.250 -2.354 H3 A1DVK 23 A1DVK H5 H5 H 0 1 N N N N N N -43.440 -32.559 0.828 4.881 -1.298 -1.370 H5 A1DVK 24 A1DVK H6 H6 H 0 1 N N N N N N -43.031 -31.916 -0.799 4.284 0.266 -2.019 H6 A1DVK 25 A1DVK H7 H7 H 0 1 N N N N N N -41.750 -28.747 1.903 2.185 1.496 0.825 H7 A1DVK 26 A1DVK H8 H8 H 0 1 N N N N N N -41.860 -28.692 0.111 2.055 -0.166 1.472 H8 A1DVK 27 A1DVK H9 H9 H 0 1 N N N N N N -43.487 -29.817 7.087 -3.342 -3.330 0.457 H9 A1DVK 28 A1DVK H11 H10 H 0 1 N N N N N N -49.774 -28.420 6.060 -5.221 2.921 -0.001 H11 A1DVK 29 A1DVK H1 H11 H 0 1 N N N N N N -43.327 -29.271 3.178 0.380 -1.567 -0.292 H1 A1DVK 30 A1DVK H10 H12 H 0 1 N N N N N N -48.119 -28.817 8.005 -6.239 0.625 0.415 H10 A1DVK 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DVK O3 S1 DOUB N N 1 A1DVK C4 C3 SING N N 2 A1DVK C4 S1 SING N N 3 A1DVK C3 C2 SING N N 4 A1DVK S1 C5 SING N N 5 A1DVK S1 O2 DOUB N N 6 A1DVK C5 C2 SING N N 7 A1DVK C2 N1 SING N N 8 A1DVK O1 C1 DOUB N N 9 A1DVK N1 C1 SING N N 10 A1DVK C1 C6 SING N N 11 A1DVK C6 C11 DOUB Y N 12 A1DVK C6 N2 SING Y N 13 A1DVK C10 C11 SING Y N 14 A1DVK C10 C9 DOUB Y N 15 A1DVK C11 C8 SING Y N 16 A1DVK N2 C7 DOUB Y N 17 A1DVK C9 N4 SING Y N 18 A1DVK C7 N3 SING Y N 19 A1DVK C8 N4 SING Y N 20 A1DVK C8 N3 DOUB Y N 21 A1DVK C10 H12 SING N N 22 A1DVK C2 H2 SING N N 23 A1DVK C3 H4 SING N N 24 A1DVK C3 H3 SING N N 25 A1DVK C4 H5 SING N N 26 A1DVK C4 H6 SING N N 27 A1DVK C5 H7 SING N N 28 A1DVK C5 H8 SING N N 29 A1DVK C7 H9 SING N N 30 A1DVK C9 H11 SING N N 31 A1DVK N1 H1 SING N N 32 A1DVK N4 H10 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DVK SMILES ACDLabs 14.52 "O=S1(=O)CCC(NC(=O)c2ncnc3[NH]ccc32)C1" A1DVK InChI InChI 1.06 "InChI=1S/C11H12N4O3S/c16-11(15-7-2-4-19(17,18)5-7)9-8-1-3-12-10(8)14-6-13-9/h1,3,6-7H,2,4-5H2,(H,15,16)(H,12,13,14)/t7-/m1/s1" A1DVK InChIKey InChI 1.06 MEGUKGWDYLVBEJ-SSDOTTSWSA-N A1DVK SMILES_CANONICAL CACTVS 3.385 "O=C(N[C@@H]1CC[S](=O)(=O)C1)c2ncnc3[nH]ccc23" A1DVK SMILES CACTVS 3.385 "O=C(N[CH]1CC[S](=O)(=O)C1)c2ncnc3[nH]ccc23" A1DVK SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N[C@@H]3CCS(=O)(=O)C3" A1DVK SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC3CCS(=O)(=O)C3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DVK "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1DVK "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DVK "Create component" 2026-08-21 RCSB A1DVK "Initial release" 2026-11-04 RCSB #