data_A1DW4 # _chem_comp.id A1DW4 _chem_comp.name "4-[(5R)-7-oxa-1-azaspiro[4.4]nonan-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-24 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DW4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15LH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DW4 C13 C1 C 0 1 Y N N N N N -46.465 -29.117 6.375 2.682 -0.152 -0.187 C13 A1DW4 1 A1DW4 C11 C2 C 0 1 Y N N N N N -48.009 -28.960 4.680 1.699 1.205 1.380 C11 A1DW4 2 A1DW4 C12 C3 C 0 1 Y N N N N N -48.636 -28.700 5.875 2.974 1.587 1.200 C12 A1DW4 3 A1DW4 C1 C4 C 0 1 Y N N N N N -44.290 -29.606 6.278 1.694 -1.898 -1.314 C1 A1DW4 4 A1DW4 C10 C5 C 0 1 Y N N N N N -46.624 -29.243 4.970 1.467 0.072 0.486 C10 A1DW4 5 A1DW4 C2 C6 C 0 1 Y N N N N N -45.438 -29.578 4.250 0.374 -0.758 0.197 C2 A1DW4 6 A1DW4 C3 C7 C 0 1 N N N N N N -46.672 -29.740 2.083 -1.448 -1.881 1.194 C3 A1DW4 7 A1DW4 C4 C8 C 0 1 N N N N N N -46.333 -30.295 0.701 -2.975 -1.661 1.046 C4 A1DW4 8 A1DW4 C5 C9 C 0 1 N N N N N N -44.808 -30.290 0.606 -3.041 -0.723 -0.191 C5 A1DW4 9 A1DW4 C6 C10 C 0 1 N N R N N N -44.249 -30.075 2.024 -1.783 0.142 -0.028 C6 A1DW4 10 A1DW4 C7 C11 C 0 1 N N N N N N -43.467 -31.302 2.491 -1.159 0.455 -1.397 C7 A1DW4 11 A1DW4 C8 C12 C 0 1 N N N N N N -42.138 -30.794 3.046 -1.206 1.999 -1.478 C8 A1DW4 12 A1DW4 C9 C13 C 0 1 N N N N N N -43.179 -28.958 2.018 -2.142 1.513 0.566 C9 A1DW4 13 A1DW4 N1 N1 N 0 1 Y N N N N N -44.286 -29.760 4.953 0.535 -1.723 -0.705 N1 A1DW4 14 A1DW4 N2 N2 N 0 1 N N N N N N -45.430 -29.740 2.846 -0.841 -0.579 0.833 N2 A1DW4 15 A1DW4 N3 N3 N 0 1 Y N N N N N -47.699 -28.792 6.888 3.574 0.779 0.270 N3 A1DW4 16 A1DW4 N4 N4 N 0 1 Y N N N N N -45.313 -29.291 7.073 2.746 -1.147 -1.071 N4 A1DW4 17 A1DW4 O1 O1 O 0 1 N N N N N N -42.032 -29.417 2.723 -2.270 2.385 -0.580 O1 A1DW4 18 A1DW4 H14 H1 H 0 1 N N N N N N -48.469 -28.954 3.703 0.981 1.652 2.052 H14 A1DW4 19 A1DW4 H15 H2 H 0 1 N N N N N N -49.682 -28.464 6.001 3.456 2.404 1.717 H15 A1DW4 20 A1DW4 H1 H3 H 0 1 N N N N N N -43.341 -29.756 6.771 1.783 -2.695 -2.037 H1 A1DW4 21 A1DW4 H3 H4 H 0 1 N N N N N N -47.064 -28.716 1.995 -1.201 -2.142 2.224 H3 A1DW4 22 A1DW4 H2 H5 H 0 1 N N N N N N -47.420 -30.378 2.576 -1.107 -2.661 0.514 H2 A1DW4 23 A1DW4 H5 H6 H 0 1 N N N N N N -46.767 -29.657 -0.084 -3.488 -2.603 0.848 H5 A1DW4 24 A1DW4 H4 H7 H 0 1 N N N N N N -46.719 -31.320 0.596 -3.387 -1.173 1.929 H4 A1DW4 25 A1DW4 H6 H8 H 0 1 N N N N N N -44.455 -31.252 0.206 -2.996 -1.299 -1.115 H6 A1DW4 26 A1DW4 H7 H9 H 0 1 N N N N N N -44.477 -29.475 -0.054 -3.940 -0.107 -0.161 H7 A1DW4 27 A1DW4 H9 H10 H 0 1 N N N N N N -44.027 -31.832 3.276 -0.130 0.100 -1.439 H9 A1DW4 28 A1DW4 H8 H11 H 0 1 N N N N N N -43.289 -31.982 1.645 -1.751 0.012 -2.198 H8 A1DW4 29 A1DW4 H10 H12 H 0 1 N N N N N N -42.114 -30.925 4.138 -0.258 2.425 -1.147 H10 A1DW4 30 A1DW4 H11 H13 H 0 1 N N N N N N -41.305 -31.350 2.591 -1.430 2.319 -2.495 H11 A1DW4 31 A1DW4 H12 H14 H 0 1 N N N N N N -42.903 -28.716 0.981 -3.086 1.457 1.109 H12 A1DW4 32 A1DW4 H13 H15 H 0 1 N N N N N N -43.580 -28.059 2.510 -1.346 1.863 1.223 H13 A1DW4 33 A1DW4 H16 H16 H 0 1 N N N N N N -47.892 -28.643 7.858 4.496 0.856 -0.022 H16 A1DW4 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DW4 C5 C4 SING N N 1 A1DW4 C5 C6 SING N N 2 A1DW4 C4 C3 SING N N 3 A1DW4 C9 C6 SING N N 4 A1DW4 C9 O1 SING N N 5 A1DW4 C6 C7 SING N N 6 A1DW4 C6 N2 SING N N 7 A1DW4 C3 N2 SING N N 8 A1DW4 C7 C8 SING N N 9 A1DW4 O1 C8 SING N N 10 A1DW4 N2 C2 SING N N 11 A1DW4 C2 N1 DOUB Y N 12 A1DW4 C2 C10 SING Y N 13 A1DW4 C11 C10 SING Y N 14 A1DW4 C11 C12 DOUB Y N 15 A1DW4 N1 C1 SING Y N 16 A1DW4 C10 C13 DOUB Y N 17 A1DW4 C12 N3 SING Y N 18 A1DW4 C1 N4 DOUB Y N 19 A1DW4 C13 N3 SING Y N 20 A1DW4 C13 N4 SING Y N 21 A1DW4 C11 H14 SING N N 22 A1DW4 C12 H15 SING N N 23 A1DW4 C1 H1 SING N N 24 A1DW4 C3 H3 SING N N 25 A1DW4 C3 H2 SING N N 26 A1DW4 C4 H5 SING N N 27 A1DW4 C4 H4 SING N N 28 A1DW4 C5 H6 SING N N 29 A1DW4 C5 H7 SING N N 30 A1DW4 C7 H9 SING N N 31 A1DW4 C7 H8 SING N N 32 A1DW4 C8 H10 SING N N 33 A1DW4 C8 H11 SING N N 34 A1DW4 C9 H12 SING N N 35 A1DW4 C9 H13 SING N N 36 A1DW4 N3 H16 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DW4 SMILES ACDLabs 14.52 "C1COCC11CCCN1c1ncnc2[NH]ccc21" A1DW4 InChI InChI 1.06 "InChI=1S/C13H16N4O/c1-3-13(4-7-18-8-13)17(6-1)12-10-2-5-14-11(10)15-9-16-12/h2,5,9H,1,3-4,6-8H2,(H,14,15,16)/t13-/m1/s1" A1DW4 InChIKey InChI 1.06 KBOMBQQIJHIUAM-CYBMUJFWSA-N A1DW4 SMILES_CANONICAL CACTVS 3.385 "C1CN(c2ncnc3[nH]ccc23)[C@]4(C1)CCOC4" A1DW4 SMILES CACTVS 3.385 "C1CN(c2ncnc3[nH]ccc23)[C]4(C1)CCOC4" A1DW4 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC[C@]34CCOC4" A1DW4 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCCC34CCOC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DW4 "SYSTEMATIC NAME" ACDLabs 14.52 "4-[(5R)-7-oxa-1-azaspiro[4.4]nonan-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" A1DW4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(5~{R})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-7-oxa-1-azaspiro[4.4]nonane" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DW4 "Create component" 2026-08-24 RCSB A1DW4 "Initial release" 2026-11-04 RCSB #