data_A1DX3 # _chem_comp.id A1DX3 _chem_comp.name "N-[(pyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H11 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 253.259 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DX3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15FJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DX3 C13 C1 C 0 1 Y N N N N N -46.820 -29.077 4.896 -2.828 0.247 0.000 C13 A1DX3 1 A1DX3 C11 C2 C 0 1 Y N N N N N -48.807 -28.615 5.878 -4.812 1.315 0.030 C11 A1DX3 2 A1DX3 C12 C3 C 0 1 Y N N N N N -48.218 -28.812 4.653 -3.486 1.548 0.033 C12 A1DX3 3 A1DX3 C1 C4 C 0 1 N N N N N N -45.718 -29.504 2.646 -0.374 0.767 0.015 C1 A1DX3 4 A1DX3 C10 C5 C 0 1 Y N N N N N -46.620 -29.017 6.295 -3.864 -0.717 -0.022 C10 A1DX3 5 A1DX3 C2 C6 C 0 1 N N N N N N -44.648 -30.640 0.718 2.010 1.275 0.029 C2 A1DX3 6 A1DX3 C3 C7 C 0 1 Y N N N N N -45.357 -31.952 0.426 3.316 0.524 0.015 C3 A1DX3 7 A1DX3 C4 C8 C 0 1 Y N N N N N -46.486 -32.337 1.178 3.962 0.301 -1.186 C4 A1DX3 8 A1DX3 C5 C9 C 0 1 Y N N N N N -47.116 -33.558 0.880 5.164 -0.391 -1.188 C5 A1DX3 9 A1DX3 C6 C10 C 0 1 Y N N N N N -46.595 -34.351 -0.156 5.673 -0.834 0.023 C6 A1DX3 10 A1DX3 C7 C11 C 0 1 Y N N N N N -45.460 -33.884 -0.850 4.970 -0.573 1.184 C7 A1DX3 11 A1DX3 C8 C12 C 0 1 Y N N N N N -45.648 -29.365 4.140 -1.497 -0.197 -0.008 C8 A1DX3 12 A1DX3 C9 C13 C 0 1 Y N N N N N -44.433 -29.466 6.115 -2.269 -2.371 -0.056 C9 A1DX3 13 A1DX3 N1 N1 N 0 1 N N N N N N -44.774 -30.302 2.124 0.898 0.321 0.007 N1 A1DX3 14 A1DX3 N2 N2 N 0 1 Y N N N N N -44.846 -32.714 -0.566 3.833 0.093 1.149 N2 A1DX3 15 A1DX3 N3 N3 N 0 1 Y N N N N N -44.464 -29.565 4.783 -1.272 -1.509 -0.036 N3 A1DX3 16 A1DX3 N4 N4 N 0 1 Y N N N N N -45.446 -29.212 6.948 -3.533 -2.000 -0.054 N4 A1DX3 17 A1DX3 N5 N5 N 0 1 Y N N N N N -47.839 -28.730 6.863 -5.049 -0.032 -0.003 N5 A1DX3 18 A1DX3 O1 O1 O 0 1 N N N N N N -46.611 -28.986 1.971 -0.598 1.962 0.040 O1 A1DX3 19 A1DX3 H10 H1 H 0 1 N N N N N N -49.853 -28.405 6.046 -5.575 2.079 0.050 H10 A1DX3 20 A1DX3 H11 H2 H 0 1 N N N N N N -48.708 -28.776 3.691 -3.003 2.513 0.056 H11 A1DX3 21 A1DX3 H3 H3 H 0 1 N N N N N N -43.583 -30.738 0.462 1.949 1.882 0.932 H3 A1DX3 22 A1DX3 H2 H4 H 0 1 N N N N N N -45.098 -29.841 0.111 1.952 1.920 -0.847 H2 A1DX3 23 A1DX3 H4 H5 H 0 1 N N N N N N -46.860 -31.705 1.969 3.536 0.660 -2.111 H4 A1DX3 24 A1DX3 H5 H6 H 0 1 N N N N N N -47.984 -33.880 1.437 5.691 -0.581 -2.112 H5 A1DX3 25 A1DX3 H6 H7 H 0 1 N N N N N N -47.052 -35.295 -0.414 6.606 -1.376 0.059 H6 A1DX3 26 A1DX3 H7 H8 H 0 1 N N N N N N -45.061 -34.492 -1.649 5.362 -0.911 2.132 H7 A1DX3 27 A1DX3 H8 H9 H 0 1 N N N N N N -43.467 -29.609 6.577 -2.039 -3.425 -0.082 H8 A1DX3 28 A1DX3 H1 H10 H 0 1 N N N N N N -44.104 -30.695 2.754 1.077 -0.632 -0.014 H1 A1DX3 29 A1DX3 H9 H11 H 0 1 N N N N N N -48.003 -28.620 7.843 -5.929 -0.442 -0.011 H9 A1DX3 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DX3 C7 N2 DOUB Y N 1 A1DX3 C7 C6 SING Y N 2 A1DX3 N2 C3 SING Y N 3 A1DX3 C6 C5 DOUB Y N 4 A1DX3 C3 C2 SING N N 5 A1DX3 C3 C4 DOUB Y N 6 A1DX3 C2 N1 SING N N 7 A1DX3 C5 C4 SING Y N 8 A1DX3 O1 C1 DOUB N N 9 A1DX3 N1 C1 SING N N 10 A1DX3 C1 C8 SING N N 11 A1DX3 C8 N3 DOUB Y N 12 A1DX3 C8 C13 SING Y N 13 A1DX3 C12 C13 SING Y N 14 A1DX3 C12 C11 DOUB Y N 15 A1DX3 N3 C9 SING Y N 16 A1DX3 C13 C10 DOUB Y N 17 A1DX3 C11 N5 SING Y N 18 A1DX3 C9 N4 DOUB Y N 19 A1DX3 C10 N5 SING Y N 20 A1DX3 C10 N4 SING Y N 21 A1DX3 C11 H10 SING N N 22 A1DX3 C12 H11 SING N N 23 A1DX3 C2 H3 SING N N 24 A1DX3 C2 H2 SING N N 25 A1DX3 C4 H4 SING N N 26 A1DX3 C5 H5 SING N N 27 A1DX3 C6 H6 SING N N 28 A1DX3 C7 H7 SING N N 29 A1DX3 C9 H8 SING N N 30 A1DX3 N1 H1 SING N N 31 A1DX3 N5 H9 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DX3 SMILES ACDLabs 14.52 "O=C(NCc1ccccn1)c1ncnc2[NH]ccc12" A1DX3 InChI InChI 1.06 "InChI=1S/C13H11N5O/c19-13(16-7-9-3-1-2-5-14-9)11-10-4-6-15-12(10)18-8-17-11/h1-6,8H,7H2,(H,16,19)(H,15,17,18)" A1DX3 InChIKey InChI 1.06 CIGLJZXVIAVOQM-UHFFFAOYSA-N A1DX3 SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1ccccn1)c2ncnc3[nH]ccc23" A1DX3 SMILES CACTVS 3.385 "O=C(NCc1ccccn1)c2ncnc3[nH]ccc23" A1DX3 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccnc(c1)CNC(=O)c2c3cc[nH]c3ncn2" A1DX3 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccnc(c1)CNC(=O)c2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DX3 "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(pyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1DX3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(pyridin-2-ylmethyl)-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DX3 "Create component" 2026-08-25 RCSB A1DX3 "Initial release" 2026-11-04 RCSB #