data_A1DX5 # _chem_comp.id A1DX5 _chem_comp.name "N-[1-(hydroxymethyl)cyclopent-3-en-1-yl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.276 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DX5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15GI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DX5 C13 C1 C 0 1 Y N N N N N -46.374 -29.358 5.173 -2.300 0.306 0.133 C13 A1DX5 1 A1DX5 C11 C2 C 0 1 Y N N N N N -48.499 -28.731 5.644 -3.965 1.792 0.442 C11 A1DX5 2 A1DX5 C12 C3 C 0 1 Y N N N N N -47.628 -28.936 4.599 -2.624 1.706 0.382 C12 A1DX5 3 A1DX5 C1 C4 C 0 1 N N N N N N -44.722 -29.725 3.257 0.206 0.231 0.040 C1 A1DX5 4 A1DX5 C10 C5 C 0 1 Y N N N N N -46.539 -29.389 6.583 -3.538 -0.377 0.059 C10 A1DX5 5 A1DX5 C2 C6 C 0 1 N N N N N N -45.432 -30.415 0.959 2.634 0.175 -0.161 C2 A1DX5 6 A1DX5 C3 C7 C 0 1 N N N N N N -44.222 -31.288 0.537 2.698 1.169 -1.322 C3 A1DX5 7 A1DX5 C4 C8 C 0 1 N N N N N N -46.747 -30.996 0.357 2.945 0.872 1.184 C4 A1DX5 8 A1DX5 C5 C9 C 0 1 N N N N N N -47.328 -29.870 -0.450 3.740 -0.146 1.969 C5 A1DX5 9 A1DX5 C6 C10 C 0 1 N N N N N N -46.611 -28.755 -0.356 4.198 -1.087 1.189 C6 A1DX5 10 A1DX5 C7 C11 C 0 1 N N N N N N -45.307 -28.979 0.354 3.784 -0.854 -0.247 C7 A1DX5 11 A1DX5 C8 C12 C 0 1 Y N N N N N -45.075 -29.726 4.716 -1.117 -0.431 -0.028 C8 A1DX5 12 A1DX5 C9 C13 C 0 1 Y N N N N N -44.433 -30.050 6.921 -2.391 -2.334 -0.303 C9 A1DX5 13 A1DX5 N1 N1 N 0 1 N N N N N N -45.578 -30.322 2.413 1.331 -0.494 -0.117 N1 A1DX5 14 A1DX5 N2 N2 N 0 1 Y N N N N N -44.121 -30.068 5.626 -1.216 -1.742 -0.243 N2 A1DX5 15 A1DX5 N3 N3 N 0 1 Y N N N N N -45.594 -29.733 7.498 -3.528 -1.684 -0.162 N3 A1DX5 16 A1DX5 N4 N4 N 0 1 Y N N N N N -47.838 -29.001 6.832 -4.522 0.556 0.252 N4 A1DX5 17 A1DX5 O1 O1 O 0 1 N N N N N N -43.691 -29.173 2.875 0.277 1.428 0.237 O1 A1DX5 18 A1DX5 O2 O2 O 0 1 N N N N N N -44.208 -32.539 1.200 2.375 0.499 -2.542 O2 A1DX5 19 A1DX5 H13 H1 H 0 1 N N N N N N -49.527 -28.413 5.554 -4.521 2.701 0.616 H13 A1DX5 20 A1DX5 H14 H2 H 0 1 N N N N N N -47.842 -28.806 3.549 -1.921 2.518 0.496 H14 A1DX5 21 A1DX5 H3 H3 H 0 1 N N N N N N -44.272 -31.463 -0.548 1.985 1.975 -1.151 H3 A1DX5 22 A1DX5 H2 H4 H 0 1 N N N N N N -43.294 -30.748 0.779 3.704 1.583 -1.390 H2 A1DX5 23 A1DX5 H6 H5 H 0 1 N N N N N N -47.439 -31.297 1.157 3.538 1.771 1.018 H6 A1DX5 24 A1DX5 H5 H6 H 0 1 N N N N N N -46.530 -31.862 -0.286 2.021 1.119 1.707 H5 A1DX5 25 A1DX5 H7 H7 H 0 1 N N N N N N -48.228 -29.957 -1.041 3.908 -0.100 3.035 H7 A1DX5 26 A1DX5 H8 H8 H 0 1 N N N N N N -46.929 -27.799 -0.745 4.794 -1.923 1.525 H8 A1DX5 27 A1DX5 H10 H9 H 0 1 N N N N N N -44.466 -28.927 -0.353 3.430 -1.783 -0.695 H10 A1DX5 28 A1DX5 H9 H10 H 0 1 N N N N N N -45.164 -28.233 1.150 4.616 -0.447 -0.820 H9 A1DX5 29 A1DX5 H11 H11 H 0 1 N N N N N N -43.638 -30.330 7.596 -2.423 -3.399 -0.483 H11 A1DX5 30 A1DX5 H1 H12 H 0 1 N N N N N N -46.391 -30.743 2.815 1.278 -1.459 -0.201 H1 A1DX5 31 A1DX5 H12 H13 H 0 1 N N N N N N -48.246 -28.925 7.742 -5.474 0.368 0.253 H12 A1DX5 32 A1DX5 H4 H14 H 0 1 N N N N N N -43.454 -33.041 0.914 2.397 1.069 -3.322 H4 A1DX5 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DX5 C5 C6 DOUB N N 1 A1DX5 C5 C4 SING N N 2 A1DX5 C6 C7 SING N N 3 A1DX5 C7 C2 SING N N 4 A1DX5 C4 C2 SING N N 5 A1DX5 C3 C2 SING N N 6 A1DX5 C3 O2 SING N N 7 A1DX5 C2 N1 SING N N 8 A1DX5 N1 C1 SING N N 9 A1DX5 O1 C1 DOUB N N 10 A1DX5 C1 C8 SING N N 11 A1DX5 C12 C13 SING Y N 12 A1DX5 C12 C11 DOUB Y N 13 A1DX5 C8 C13 DOUB Y N 14 A1DX5 C8 N2 SING Y N 15 A1DX5 C13 C10 SING Y N 16 A1DX5 N2 C9 DOUB Y N 17 A1DX5 C11 N4 SING Y N 18 A1DX5 C10 N4 SING Y N 19 A1DX5 C10 N3 DOUB Y N 20 A1DX5 C9 N3 SING Y N 21 A1DX5 C11 H13 SING N N 22 A1DX5 C12 H14 SING N N 23 A1DX5 C3 H3 SING N N 24 A1DX5 C3 H2 SING N N 25 A1DX5 C4 H6 SING N N 26 A1DX5 C4 H5 SING N N 27 A1DX5 C5 H7 SING N N 28 A1DX5 C6 H8 SING N N 29 A1DX5 C7 H10 SING N N 30 A1DX5 C7 H9 SING N N 31 A1DX5 C9 H11 SING N N 32 A1DX5 N1 H1 SING N N 33 A1DX5 N4 H12 SING N N 34 A1DX5 O2 H4 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DX5 SMILES ACDLabs 14.52 "OCC1(CC=CC1)NC(=O)c1ncnc2[NH]ccc12" A1DX5 InChI InChI 1.06 "InChI=1S/C13H14N4O2/c18-7-13(4-1-2-5-13)17-12(19)10-9-3-6-14-11(9)16-8-15-10/h1-3,6,8,18H,4-5,7H2,(H,17,19)(H,14,15,16)" A1DX5 InChIKey InChI 1.06 RCCMNVQKVFNVCI-UHFFFAOYSA-N A1DX5 SMILES_CANONICAL CACTVS 3.385 "OCC1(CC=CC1)NC(=O)c2ncnc3[nH]ccc23" A1DX5 SMILES CACTVS 3.385 "OCC1(CC=CC1)NC(=O)c2ncnc3[nH]ccc23" A1DX5 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC3(CC=CC3)CO" A1DX5 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC3(CC=CC3)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DX5 "SYSTEMATIC NAME" ACDLabs 14.52 "N-[1-(hydroxymethyl)cyclopent-3-en-1-yl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1DX5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[1-(hydroxymethyl)cyclopent-3-en-1-yl]-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DX5 "Create component" 2026-08-25 RCSB A1DX5 "Initial release" 2026-11-04 RCSB #