data_A1DX9 # _chem_comp.id A1DX9 _chem_comp.name "N-{[(5R)-2-oxo-1,3-oxazolidin-5-yl]methyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H11 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 261.237 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DX9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15JW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DX9 C11 C1 C 0 1 Y N N N N N -46.596 -29.027 4.799 -2.947 0.306 -0.116 C11 A1DX9 1 A1DX9 C1 C2 C 0 1 N N N N N N -43.552 -32.330 2.047 4.704 -0.527 -0.665 C1 A1DX9 2 A1DX9 C10 C3 C 0 1 Y N N N N N -47.964 -28.768 4.434 -3.458 1.622 -0.479 C10 A1DX9 3 A1DX9 C2 C4 C 0 1 N N N N N N -44.689 -31.391 0.215 4.390 1.017 0.995 C2 A1DX9 4 A1DX9 C3 C5 C 0 1 N N R N N N -43.324 -30.717 0.394 3.141 0.123 0.868 C3 A1DX9 5 A1DX9 C4 C6 C 0 1 N N N N N N -43.439 -29.253 0.867 1.917 0.961 0.494 C4 A1DX9 6 A1DX9 C5 C7 C 0 1 N N N N N N -45.171 -29.128 2.659 -0.479 0.637 0.194 C5 A1DX9 7 A1DX9 C6 C8 C 0 1 Y N N N N N -45.338 -29.188 4.151 -1.685 -0.222 0.196 C6 A1DX9 8 A1DX9 C7 C9 C 0 1 Y N N N N N -44.351 -29.472 6.237 -2.672 -2.285 0.499 C7 A1DX9 9 A1DX9 C8 C10 C 0 1 Y N N N N N -46.552 -29.109 6.213 -4.067 -0.559 -0.098 C8 A1DX9 10 A1DX9 C9 C11 C 0 1 Y N N N N N -48.685 -28.719 5.603 -4.786 1.491 -0.653 C9 A1DX9 11 A1DX9 N1 N1 N 0 1 N N N N N N -44.735 -32.281 1.345 5.301 0.494 -0.035 N1 A1DX9 12 A1DX9 N2 N2 N 0 1 N N N N N N -43.888 -29.241 2.250 0.724 0.111 0.496 N2 A1DX9 13 A1DX9 N3 N3 N 0 1 Y N N N N N -44.237 -29.415 4.910 -1.601 -1.518 0.495 N3 A1DX9 14 A1DX9 N4 N4 N 0 1 Y N N N N N -45.452 -29.342 6.969 -3.876 -1.835 0.208 N4 A1DX9 15 A1DX9 N5 N5 N 0 1 Y N N N N N -47.833 -28.923 6.674 -5.161 0.194 -0.428 N5 A1DX9 16 A1DX9 O1 O1 O 0 1 N N N N N N -43.297 -32.969 3.067 5.230 -1.150 -1.566 O1 A1DX9 17 A1DX9 O2 O2 O 0 1 N N N N N N -46.145 -28.976 1.910 -0.574 1.817 -0.081 O2 A1DX9 18 A1DX9 O3 O3 O 0 1 N N N N N N -42.701 -31.527 1.389 3.477 -0.801 -0.208 O3 A1DX9 19 A1DX9 H11 H1 H 0 1 N N N N N N -48.350 -28.637 3.434 -2.881 2.529 -0.589 H11 A1DX9 20 A1DX9 H2 H2 H 0 1 N N N N N N -45.506 -30.655 0.253 4.138 2.057 0.790 H2 A1DX9 21 A1DX9 H3 H3 H 0 1 N N N N N N -44.739 -31.946 -0.733 4.833 0.917 1.985 H3 A1DX9 22 A1DX9 H4 H4 H 0 1 N N N N N N -42.767 -30.754 -0.554 2.963 -0.419 1.797 H4 A1DX9 23 A1DX9 H5 H5 H 0 1 N N N N N N -42.457 -28.762 0.793 1.792 1.765 1.219 H5 A1DX9 24 A1DX9 H6 H6 H 0 1 N N N N N N -44.165 -28.717 0.238 2.058 1.386 -0.500 H6 A1DX9 25 A1DX9 H8 H7 H 0 1 N N N N N N -43.436 -29.645 6.784 -2.556 -3.331 0.743 H8 A1DX9 26 A1DX9 H10 H8 H 0 1 N N N N N N -49.749 -28.548 5.674 -5.457 2.292 -0.928 H10 A1DX9 27 A1DX9 H1 H9 H 0 1 N N N N N N -45.545 -32.811 1.595 6.190 0.832 -0.226 H1 A1DX9 28 A1DX9 H7 H10 H 0 1 N N N N N N -43.188 -29.323 2.959 0.800 -0.831 0.715 H7 A1DX9 29 A1DX9 H9 H11 H 0 1 N N N N N N -48.107 -28.933 7.636 -6.069 -0.141 -0.493 H9 A1DX9 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DX9 C2 C3 SING N N 1 A1DX9 C2 N1 SING N N 2 A1DX9 C3 C4 SING N N 3 A1DX9 C3 O3 SING N N 4 A1DX9 C4 N2 SING N N 5 A1DX9 N1 C1 SING N N 6 A1DX9 O3 C1 SING N N 7 A1DX9 O2 C5 DOUB N N 8 A1DX9 C1 O1 DOUB N N 9 A1DX9 N2 C5 SING N N 10 A1DX9 C5 C6 SING N N 11 A1DX9 C6 C11 DOUB Y N 12 A1DX9 C6 N3 SING Y N 13 A1DX9 C10 C11 SING Y N 14 A1DX9 C10 C9 DOUB Y N 15 A1DX9 C11 C8 SING Y N 16 A1DX9 N3 C7 DOUB Y N 17 A1DX9 C9 N5 SING Y N 18 A1DX9 C8 N5 SING Y N 19 A1DX9 C8 N4 DOUB Y N 20 A1DX9 C7 N4 SING Y N 21 A1DX9 C10 H11 SING N N 22 A1DX9 C2 H2 SING N N 23 A1DX9 C2 H3 SING N N 24 A1DX9 C3 H4 SING N N 25 A1DX9 C4 H5 SING N N 26 A1DX9 C4 H6 SING N N 27 A1DX9 C7 H8 SING N N 28 A1DX9 C9 H10 SING N N 29 A1DX9 N1 H1 SING N N 30 A1DX9 N2 H7 SING N N 31 A1DX9 N5 H9 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DX9 SMILES ACDLabs 14.52 "O=C(NCC1CNC(=O)O1)c1ncnc2[NH]ccc21" A1DX9 InChI InChI 1.06 "InChI=1S/C11H11N5O3/c17-10(13-3-6-4-14-11(18)19-6)8-7-1-2-12-9(7)16-5-15-8/h1-2,5-6H,3-4H2,(H,13,17)(H,14,18)(H,12,15,16)/t6-/m1/s1" A1DX9 InChIKey InChI 1.06 WEWNMCWXYIPWOL-ZCFIWIBFSA-N A1DX9 SMILES_CANONICAL CACTVS 3.385 "O=C1NC[C@@H](CNC(=O)c2ncnc3[nH]ccc23)O1" A1DX9 SMILES CACTVS 3.385 "O=C1NC[CH](CNC(=O)c2ncnc3[nH]ccc23)O1" A1DX9 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC[C@@H]3CNC(=O)O3" A1DX9 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NCC3CNC(=O)O3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DX9 "SYSTEMATIC NAME" ACDLabs 14.52 "N-{[(5R)-2-oxo-1,3-oxazolidin-5-yl]methyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1DX9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[[(5~{R})-2-oxidanylidene-1,3-oxazolidin-5-yl]methyl]-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DX9 "Create component" 2026-08-25 RCSB A1DX9 "Initial release" 2026-11-04 RCSB #