data_A1DXB # _chem_comp.id A1DXB _chem_comp.name "[(2R,3S)-1-(6-chloro-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-3-methylpiperidin-2-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 Cl N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-24 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 280.753 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DXB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15ME _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DXB C13 C1 C 0 1 N N N N N N -44.081 -32.325 2.064 -2.187 -0.077 -1.529 C13 A1DXB 1 A1DXB C11 C2 C 0 1 Y N N N N N -46.277 -29.572 4.637 1.053 -0.430 0.289 C11 A1DXB 2 A1DXB C12 C3 C 0 1 N N R N N N -43.602 -30.894 2.369 -1.655 0.760 -0.363 C12 A1DXB 3 A1DXB C1 C4 C 0 1 N N N N N N -41.622 -31.015 0.735 -3.111 2.658 -1.087 C1 A1DXB 4 A1DXB C10 C5 C 0 1 Y N N N N N -47.626 -29.545 4.149 1.656 0.896 0.414 C10 A1DXB 5 A1DXB C2 C6 C 0 1 N N S N N N -42.845 -30.212 1.200 -2.731 1.751 0.085 C2 A1DXB 6 A1DXB C3 C7 C 0 1 N N N N N N -43.793 -29.857 0.041 -3.967 0.978 0.553 C3 A1DXB 7 A1DXB C4 C8 C 0 1 N N N N N N -44.959 -29.003 0.553 -3.567 0.028 1.686 C4 A1DXB 8 A1DXB C5 C9 C 0 1 N N N N N N -45.693 -29.693 1.701 -2.466 -0.913 1.191 C5 A1DXB 9 A1DXB C6 C10 C 0 1 Y N N N N N -44.990 -29.812 4.104 -0.244 -0.948 0.424 C6 A1DXB 10 A1DXB C7 C11 C 0 1 Y N N N N N -44.127 -29.523 6.247 0.584 -3.039 -0.093 C7 A1DXB 11 A1DXB C8 C12 C 0 1 Y N N N N N -46.319 -29.324 6.037 2.099 -1.308 -0.049 C8 A1DXB 12 A1DXB C9 C13 C 0 1 Y N N N N N -48.391 -29.278 5.248 2.968 0.751 0.156 C9 A1DXB 13 A1DXB N1 N1 N 0 1 N N N N N N -44.745 -30.069 2.750 -1.306 -0.125 0.755 N1 A1DXB 14 A1DXB N2 N2 N 0 1 Y N N N N N -43.932 -29.783 4.952 -0.427 -2.250 0.224 N2 A1DXB 15 A1DXB N3 N3 N 0 1 Y N N N N N -45.266 -29.278 6.879 1.816 -2.597 -0.224 N3 A1DXB 16 A1DXB N4 N4 N 0 1 Y N N N N N -47.627 -29.130 6.382 3.244 -0.562 -0.122 N4 A1DXB 17 A1DXB O1 O1 O 0 1 N N N N N N -44.784 -32.850 3.170 -1.140 -0.909 -2.034 O1 A1DXB 18 A1DXB CL1 CL1 CL 0 0 N N N N N N -50.083 -29.151 5.418 4.136 2.036 0.172 CL1 A1DXB 19 A1DXB H15 H1 H 0 1 N N N N N N -44.745 -32.307 1.187 -3.011 -0.701 -1.182 H15 A1DXB 20 A1DXB H16 H2 H 0 1 N N N N N N -43.210 -32.962 1.851 -2.540 0.584 -2.320 H16 A1DXB 21 A1DXB H14 H3 H 0 1 N N N N N N -42.910 -30.950 3.222 -0.769 1.307 -0.684 H14 A1DXB 22 A1DXB H2 H4 H 0 1 N N N N N N -40.981 -31.241 1.600 -3.495 2.052 -1.907 H2 A1DXB 23 A1DXB H3 H5 H 0 1 N N N N N N -41.955 -31.955 0.270 -3.877 3.364 -0.767 H3 A1DXB 24 A1DXB H1 H6 H 0 1 N N N N N N -41.053 -30.425 0.001 -2.230 3.206 -1.422 H1 A1DXB 25 A1DXB H13 H7 H 0 1 N N N N N N -47.963 -29.702 3.135 1.146 1.814 0.664 H13 A1DXB 26 A1DXB H4 H8 H 0 1 N N N N N N -42.462 -29.259 1.593 -2.348 2.357 0.906 H4 A1DXB 27 A1DXB H5 H9 H 0 1 N N N N N N -44.188 -30.783 -0.402 -4.720 1.678 0.914 H5 A1DXB 28 A1DXB H6 H10 H 0 1 N N N N N N -43.238 -29.293 -0.723 -4.373 0.402 -0.278 H6 A1DXB 29 A1DXB H7 H11 H 0 1 N N N N N N -44.567 -28.038 0.907 -3.197 0.607 2.533 H7 A1DXB 30 A1DXB H8 H12 H 0 1 N N N N N N -45.666 -28.831 -0.272 -4.433 -0.556 1.995 H8 A1DXB 31 A1DXB H9 H13 H 0 1 N N N N N N -46.444 -29.006 2.118 -2.169 -1.581 2.000 H9 A1DXB 32 A1DXB H10 H14 H 0 1 N N N N N N -46.194 -30.596 1.322 -2.841 -1.501 0.354 H10 A1DXB 33 A1DXB H11 H15 H 0 1 N N N N N N -43.239 -29.511 6.861 0.392 -4.091 -0.242 H11 A1DXB 34 A1DXB H12 H16 H 0 1 N N N N N N -47.968 -28.918 7.298 4.122 -0.912 -0.339 H12 A1DXB 35 A1DXB H17 H17 H 0 1 N N N N N N -45.075 -33.732 2.971 -1.406 -1.468 -2.777 H17 A1DXB 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DXB C3 C4 SING N N 1 A1DXB C3 C2 SING N N 2 A1DXB C4 C5 SING N N 3 A1DXB C1 C2 SING N N 4 A1DXB C2 C12 SING N N 5 A1DXB C5 N1 SING N N 6 A1DXB C13 C12 SING N N 7 A1DXB C13 O1 SING N N 8 A1DXB C12 N1 SING N N 9 A1DXB N1 C6 SING N N 10 A1DXB C6 C11 DOUB Y N 11 A1DXB C6 N2 SING Y N 12 A1DXB C10 C11 SING Y N 13 A1DXB C10 C9 DOUB Y N 14 A1DXB C11 C8 SING Y N 15 A1DXB N2 C7 DOUB Y N 16 A1DXB C9 CL1 SING N N 17 A1DXB C9 N4 SING Y N 18 A1DXB C8 N4 SING Y N 19 A1DXB C8 N3 DOUB Y N 20 A1DXB C7 N3 SING Y N 21 A1DXB C13 H15 SING N N 22 A1DXB C13 H16 SING N N 23 A1DXB C12 H14 SING N N 24 A1DXB C1 H2 SING N N 25 A1DXB C1 H3 SING N N 26 A1DXB C1 H1 SING N N 27 A1DXB C10 H13 SING N N 28 A1DXB C2 H4 SING N N 29 A1DXB C3 H5 SING N N 30 A1DXB C3 H6 SING N N 31 A1DXB C4 H7 SING N N 32 A1DXB C4 H8 SING N N 33 A1DXB C5 H9 SING N N 34 A1DXB C5 H10 SING N N 35 A1DXB C7 H11 SING N N 36 A1DXB N4 H12 SING N N 37 A1DXB O1 H17 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DXB SMILES ACDLabs 14.52 "Clc1cc2c(ncnc2[NH]1)N1CCCC(C)C1CO" A1DXB InChI InChI 1.06 "InChI=1S/C13H17ClN4O/c1-8-3-2-4-18(10(8)6-19)13-9-5-11(14)17-12(9)15-7-16-13/h5,7-8,10,19H,2-4,6H2,1H3,(H,15,16,17)/t8-,10-/m0/s1" A1DXB InChIKey InChI 1.06 OYXSPADHRDXEMA-WPRPVWTQSA-N A1DXB SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CCCN([C@H]1CO)c2ncnc3[nH]c(Cl)cc23" A1DXB SMILES CACTVS 3.385 "C[CH]1CCCN([CH]1CO)c2ncnc3[nH]c(Cl)cc23" A1DXB SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1CCCN([C@H]1CO)c2c3cc([nH]c3ncn2)Cl" A1DXB SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CCCN(C1CO)c2c3cc([nH]c3ncn2)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DXB "SYSTEMATIC NAME" ACDLabs 14.52 "[(2R,3S)-1-(6-chloro-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-3-methylpiperidin-2-yl]methanol" A1DXB "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(2~{R},3~{S})-1-(6-chloranyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-3-methyl-piperidin-2-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DXB "Create component" 2026-08-24 RCSB A1DXB "Initial release" 2026-11-04 RCSB #