data_A1DXL # _chem_comp.id A1DXL _chem_comp.name "{(1S,3R)-3-methyl-1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]cyclopentyl}methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DXL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15OX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DXL C13 C1 C 0 1 N N N N N N -44.224 -30.257 0.723 -2.219 -0.202 1.077 C13 A1DXL 1 A1DXL C11 C2 C 0 1 Y N N N N N -47.814 -28.885 4.388 2.323 -0.829 -1.690 C11 A1DXL 2 A1DXL C12 C3 C 0 1 Y N N N N N -46.483 -29.158 4.862 1.854 -0.250 -0.432 C12 A1DXL 3 A1DXL C1 C4 C 0 1 N N N N N N -46.274 -31.765 0.319 -2.573 -2.688 0.968 C1 A1DXL 4 A1DXL C10 C5 C 0 1 Y N N N N N -48.586 -28.624 5.496 3.646 -1.021 -1.560 C10 A1DXL 5 A1DXL C2 C6 C 0 1 N N R N N N -44.761 -31.695 0.579 -3.165 -1.323 0.613 C2 A1DXL 6 A1DXL C3 C7 C 0 1 N N N N N N -44.351 -32.425 1.866 -3.296 -1.185 -0.918 C3 A1DXL 7 A1DXL C4 C8 C 0 1 N N N N N N -43.390 -31.479 2.586 -2.950 0.299 -1.196 C4 A1DXL 8 A1DXL C5 C9 C 0 1 N N S N N N -43.842 -30.051 2.207 -1.807 0.578 -0.189 C5 A1DXL 9 A1DXL C6 C10 C 0 1 N N N N N N -42.701 -29.005 2.355 -1.713 2.076 0.112 C6 A1DXL 10 A1DXL C7 C11 C 0 1 Y N N N N N -45.221 -29.494 4.300 0.613 0.173 0.066 C7 A1DXL 11 A1DXL C8 C12 C 0 1 Y N N N N N -44.323 -29.519 6.446 1.653 0.756 2.042 C8 A1DXL 12 A1DXL C9 C13 C 0 1 Y N N N N N -46.501 -29.037 6.277 2.988 -0.135 0.394 C9 A1DXL 13 A1DXL N1 N1 N 0 1 N N N N N N -45.067 -29.644 2.913 -0.530 0.079 -0.706 N1 A1DXL 14 A1DXL N2 N2 N 0 1 Y N N N N N -44.162 -29.666 5.131 0.563 0.665 1.301 N2 A1DXL 15 A1DXL N3 N3 N 0 1 Y N N N N N -45.440 -29.212 7.110 2.836 0.372 1.616 N3 A1DXL 16 A1DXL N4 N4 N 0 1 Y N N N N N -47.792 -28.708 6.628 4.055 -0.609 -0.318 N4 A1DXL 17 A1DXL O1 O1 O 0 1 N N N N N N -41.924 -29.206 3.523 -1.213 2.762 -1.038 O1 A1DXL 18 A1DXL H18 H1 H 0 1 N N N N N N -43.339 -30.121 0.085 -2.736 0.460 1.771 H18 A1DXL 19 A1DXL H17 H2 H 0 1 N N N N N N -45.001 -29.535 0.431 -1.337 -0.629 1.555 H17 A1DXL 20 A1DXL H16 H3 H 0 1 N N N N N N -48.144 -28.885 3.360 1.720 -1.061 -2.556 H16 A1DXL 21 A1DXL H3 H4 H 0 1 N N N N N N -46.583 -32.817 0.228 -2.438 -2.757 2.048 H3 A1DXL 22 A1DXL H1 H5 H 0 1 N N N N N N -46.812 -31.296 1.156 -3.250 -3.476 0.636 H1 A1DXL 23 A1DXL H2 H6 H 0 1 N N N N N N -46.511 -31.232 -0.613 -1.609 -2.806 0.473 H2 A1DXL 24 A1DXL H15 H7 H 0 1 N N N N N N -49.641 -28.391 5.485 4.290 -1.437 -2.320 H15 A1DXL 25 A1DXL H4 H8 H 0 1 N N N N N N -44.244 -32.171 -0.267 -4.141 -1.206 1.084 H4 A1DXL 26 A1DXL H6 H9 H 0 1 N N N N N N -45.233 -32.625 2.492 -2.587 -1.843 -1.421 H6 A1DXL 27 A1DXL H5 H10 H 0 1 N N N N N N -43.848 -33.374 1.626 -4.315 -1.406 -1.235 H5 A1DXL 28 A1DXL H8 H11 H 0 1 N N N N N N -43.453 -31.624 3.675 -2.602 0.428 -2.221 H8 A1DXL 29 A1DXL H7 H12 H 0 1 N N N N N N -42.357 -31.655 2.252 -3.809 0.939 -0.997 H7 A1DXL 30 A1DXL H9 H13 H 0 1 N N N N N N -42.042 -29.076 1.477 -2.702 2.459 0.362 H9 A1DXL 31 A1DXL H10 H14 H 0 1 N N N N N N -43.148 -28.001 2.398 -1.038 2.236 0.952 H10 A1DXL 32 A1DXL H13 H15 H 0 1 N N N N N N -43.440 -29.667 7.050 1.568 1.162 3.039 H13 A1DXL 33 A1DXL H12 H16 H 0 1 N N N N N N -45.305 -28.753 2.527 -0.487 -0.316 -1.591 H12 A1DXL 34 A1DXL H14 H17 H 0 1 N N N N N N -48.110 -28.553 7.563 4.968 -0.649 0.008 H14 A1DXL 35 A1DXL H11 H18 H 0 1 N N N N N N -41.243 -28.545 3.569 -1.127 3.718 -0.919 H11 A1DXL 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DXL C1 C2 SING N N 1 A1DXL C2 C13 SING N N 2 A1DXL C2 C3 SING N N 3 A1DXL C13 C5 SING N N 4 A1DXL C3 C4 SING N N 5 A1DXL C5 C6 SING N N 6 A1DXL C5 C4 SING N N 7 A1DXL C5 N1 SING N N 8 A1DXL C6 O1 SING N N 9 A1DXL N1 C7 SING N N 10 A1DXL C7 C12 DOUB Y N 11 A1DXL C7 N2 SING Y N 12 A1DXL C11 C12 SING Y N 13 A1DXL C11 C10 DOUB Y N 14 A1DXL C12 C9 SING Y N 15 A1DXL N2 C8 DOUB Y N 16 A1DXL C10 N4 SING Y N 17 A1DXL C9 N4 SING Y N 18 A1DXL C9 N3 DOUB Y N 19 A1DXL C8 N3 SING Y N 20 A1DXL C13 H18 SING N N 21 A1DXL C13 H17 SING N N 22 A1DXL C11 H16 SING N N 23 A1DXL C1 H3 SING N N 24 A1DXL C1 H1 SING N N 25 A1DXL C1 H2 SING N N 26 A1DXL C10 H15 SING N N 27 A1DXL C2 H4 SING N N 28 A1DXL C3 H6 SING N N 29 A1DXL C3 H5 SING N N 30 A1DXL C4 H8 SING N N 31 A1DXL C4 H7 SING N N 32 A1DXL C6 H9 SING N N 33 A1DXL C6 H10 SING N N 34 A1DXL C8 H13 SING N N 35 A1DXL N1 H12 SING N N 36 A1DXL N4 H14 SING N N 37 A1DXL O1 H11 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DXL SMILES ACDLabs 14.52 "CC1CCC(CO)(C1)Nc1ncnc2[NH]ccc21" A1DXL InChI InChI 1.06 "InChI=1S/C13H18N4O/c1-9-2-4-13(6-9,7-18)17-12-10-3-5-14-11(10)15-8-16-12/h3,5,8-9,18H,2,4,6-7H2,1H3,(H2,14,15,16,17)/t9-,13+/m1/s1" A1DXL InChIKey InChI 1.06 QCXJBVPZXSVFPZ-RNCFNFMXSA-N A1DXL SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CC[C@@](CO)(C1)Nc2ncnc3[nH]ccc23" A1DXL SMILES CACTVS 3.385 "C[CH]1CC[C](CO)(C1)Nc2ncnc3[nH]ccc23" A1DXL SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H]1CC[C@](C1)(CO)Nc2c3cc[nH]c3ncn2" A1DXL SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CCC(C1)(CO)Nc2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DXL "SYSTEMATIC NAME" ACDLabs 14.52 "{(1S,3R)-3-methyl-1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]cyclopentyl}methanol" A1DXL "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(1~{S},3~{R})-3-methyl-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)cyclopentyl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DXL "Create component" 2026-08-25 RCSB A1DXL "Initial release" 2026-11-04 RCSB #