data_A1DXM # _chem_comp.id A1DXM _chem_comp.name "(8R)-5-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-5-azaspiro[3.4]octan-8-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 243.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DXM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15OY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DXM C13 C1 C 0 1 N N N N N N -43.196 -31.281 2.840 -1.152 0.418 -1.579 C13 A1DXM 1 A1DXM C11 C2 C 0 1 N N N N N N -42.836 -29.205 2.654 -1.897 1.831 -0.181 C11 A1DXM 2 A1DXM C12 C3 C 0 1 N N N N N N -41.931 -30.436 2.683 -2.029 1.676 -1.706 C12 A1DXM 3 A1DXM C1 C4 C 0 1 N N R N N N -44.515 -30.080 0.842 -2.907 -0.539 0.060 C1 A1DXM 4 A1DXM C10 C5 C 0 1 N N N N N N -44.056 -30.104 2.305 -1.646 0.319 -0.132 C10 A1DXM 5 A1DXM C2 C6 C 0 1 N N N N N N -45.996 -30.483 0.867 -2.756 -1.051 1.518 C2 A1DXM 6 A1DXM C3 C7 C 0 1 N N N N N N -46.380 -30.481 2.346 -1.222 -1.240 1.628 C3 A1DXM 7 A1DXM C4 C8 C 0 1 Y N N N N N -45.379 -29.612 4.430 0.526 -0.505 0.222 C4 A1DXM 8 A1DXM C5 C9 C 0 1 Y N N N N N -44.306 -29.625 6.504 1.673 -1.938 -1.177 C5 A1DXM 9 A1DXM C6 C10 C 0 1 Y N N N N N -46.484 -29.124 6.505 2.876 -0.206 -0.258 C6 A1DXM 10 A1DXM C7 C11 C 0 1 Y N N N N N -48.632 -28.691 5.910 3.396 1.622 0.936 C7 A1DXM 11 A1DXM C8 C12 C 0 1 Y N N N N N -47.963 -28.975 4.742 2.090 1.410 1.169 C8 A1DXM 12 A1DXM C9 C13 C 0 1 Y N N N N N -46.591 -29.256 5.094 1.712 0.222 0.405 C9 A1DXM 13 A1DXM N1 N1 N 0 1 N N N N N N -45.300 -29.787 3.032 -0.646 -0.121 0.848 N1 A1DXM 14 A1DXM N2 N2 N 0 1 Y N N N N N -44.253 -29.789 5.179 0.557 -1.571 -0.573 N2 A1DXM 15 A1DXM N3 N3 N 0 1 Y N N N N N -45.360 -29.297 7.252 2.806 -1.286 -1.034 N3 A1DXM 16 A1DXM N4 N4 N 0 1 Y N N N N N -47.738 -28.781 6.963 3.877 0.662 0.083 N4 A1DXM 17 A1DXM N5 N5 N 0 1 N N N N N N -44.354 -28.746 0.237 -4.119 0.280 -0.081 N5 A1DXM 18 A1DXM H15 H1 H 0 1 N N N N N N -43.420 -31.564 3.879 -1.478 -0.408 -2.210 H15 A1DXM 19 A1DXM H16 H2 H 0 1 N N N N N N -43.218 -32.178 2.203 -0.084 0.619 -1.663 H16 A1DXM 20 A1DXM H12 H3 H 0 1 N N N N N N -42.577 -28.477 1.871 -1.037 2.425 0.126 H12 A1DXM 21 A1DXM H11 H4 H 0 1 N N N N N N -42.922 -28.689 3.621 -2.822 2.138 0.309 H11 A1DXM 22 A1DXM H13 H5 H 0 1 N N N N N N -41.372 -30.616 1.753 -1.558 2.483 -2.268 H13 A1DXM 23 A1DXM H14 H6 H 0 1 N N N N N N -41.242 -30.479 3.539 -3.046 1.466 -2.038 H14 A1DXM 24 A1DXM H2 H7 H 0 1 N N N N N N -43.945 -30.827 0.270 -2.919 -1.372 -0.643 H2 A1DXM 25 A1DXM H4 H8 H 0 1 N N N N N N -46.604 -29.756 0.308 -3.110 -0.308 2.232 H4 A1DXM 26 A1DXM H3 H9 H 0 1 N N N N N N -46.132 -31.485 0.433 -3.276 -2.000 1.654 H3 A1DXM 27 A1DXM H5 H10 H 0 1 N N N N N N -47.332 -29.951 2.494 -0.906 -1.178 2.670 H5 A1DXM 28 A1DXM H6 H11 H 0 1 N N N N N N -46.472 -31.511 2.720 -0.925 -2.196 1.197 H6 A1DXM 29 A1DXM H7 H12 H 0 1 N N N N N N -43.379 -29.777 7.036 1.654 -2.810 -1.814 H7 A1DXM 30 A1DXM H9 H13 H 0 1 N N N N N N -49.679 -28.440 5.992 3.979 2.428 1.356 H9 A1DXM 31 A1DXM H10 H14 H 0 1 N N N N N N -48.385 -28.986 3.748 1.444 2.003 1.799 H10 A1DXM 32 A1DXM H8 H15 H 0 1 N N N N N N -47.970 -28.620 7.922 4.793 0.606 -0.231 H8 A1DXM 33 A1DXM H1 H16 H 0 1 N N N N N N -43.385 -28.498 0.228 -4.279 0.527 -1.046 H1 A1DXM 34 A1DXM H17 H17 H 0 1 N N N N N N -44.703 -28.761 -0.700 -4.921 -0.192 0.309 H17 A1DXM 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DXM N5 C1 SING N N 1 A1DXM C1 C2 SING N N 2 A1DXM C1 C10 SING N N 3 A1DXM C2 C3 SING N N 4 A1DXM C10 C11 SING N N 5 A1DXM C10 C13 SING N N 6 A1DXM C10 N1 SING N N 7 A1DXM C3 N1 SING N N 8 A1DXM C11 C12 SING N N 9 A1DXM C12 C13 SING N N 10 A1DXM N1 C4 SING N N 11 A1DXM C4 C9 DOUB Y N 12 A1DXM C4 N2 SING Y N 13 A1DXM C8 C9 SING Y N 14 A1DXM C8 C7 DOUB Y N 15 A1DXM C9 C6 SING Y N 16 A1DXM N2 C5 DOUB Y N 17 A1DXM C7 N4 SING Y N 18 A1DXM C5 N3 SING Y N 19 A1DXM C6 N4 SING Y N 20 A1DXM C6 N3 DOUB Y N 21 A1DXM C13 H15 SING N N 22 A1DXM C13 H16 SING N N 23 A1DXM C11 H12 SING N N 24 A1DXM C11 H11 SING N N 25 A1DXM C12 H13 SING N N 26 A1DXM C12 H14 SING N N 27 A1DXM C1 H2 SING N N 28 A1DXM C2 H4 SING N N 29 A1DXM C2 H3 SING N N 30 A1DXM C3 H5 SING N N 31 A1DXM C3 H6 SING N N 32 A1DXM C5 H7 SING N N 33 A1DXM C7 H9 SING N N 34 A1DXM C8 H10 SING N N 35 A1DXM N4 H8 SING N N 36 A1DXM N5 H1 SING N N 37 A1DXM N5 H17 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DXM SMILES ACDLabs 14.52 "NC1CCN(c2ncnc3[NH]ccc23)C21CCC2" A1DXM InChI InChI 1.06 "InChI=1S/C13H17N5/c14-10-3-7-18(13(10)4-1-5-13)12-9-2-6-15-11(9)16-8-17-12/h2,6,8,10H,1,3-5,7,14H2,(H,15,16,17)/t10-/m1/s1" A1DXM InChIKey InChI 1.06 HQSLQZGXBRMSRD-SNVBAGLBSA-N A1DXM SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1CCN(c2ncnc3[nH]ccc23)C14CCC4" A1DXM SMILES CACTVS 3.385 "N[CH]1CCN(c2ncnc3[nH]ccc23)C14CCC4" A1DXM SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC[C@H](C34CCC4)N" A1DXM SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC(C34CCC4)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DXM "SYSTEMATIC NAME" ACDLabs 14.52 "(8R)-5-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-5-azaspiro[3.4]octan-8-amine" A1DXM "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(8~{R})-5-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-5-azaspiro[3.4]octan-8-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DXM "Create component" 2026-08-25 RCSB A1DXM "Initial release" 2026-11-04 RCSB #