data_A1DXY # _chem_comp.id A1DXY _chem_comp.name "N-ethyl-N'-{6-[(2-oxopyrrolidin-1-yl)amino]pyrimidin-4-yl}urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.284 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DXY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15CZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DXY C11 C1 C 0 1 Y N N N N N -44.471 -29.339 6.165 0.072 1.522 0.648 C11 A1DXY 1 A1DXY C1 C2 C 0 1 N N N N N N -52.484 -28.583 7.122 -7.297 -0.478 -0.394 C1 A1DXY 2 A1DXY C10 C3 C 0 1 N N N N N N -43.455 -31.319 2.385 4.067 0.313 -0.824 C10 A1DXY 3 A1DXY C2 C4 C 0 1 N N N N N N -51.537 -29.787 7.118 -6.045 0.327 -0.042 C2 A1DXY 4 A1DXY C3 C5 C 0 1 N N N N N N -49.192 -29.515 6.399 -3.636 -0.024 0.071 C3 A1DXY 5 A1DXY C4 C6 C 0 1 Y N N N N N -46.752 -29.321 6.148 -1.277 -0.264 0.101 C4 A1DXY 6 A1DXY C5 C7 C 0 1 Y N N N N N -46.739 -29.613 4.775 -0.145 -1.036 -0.138 C5 A1DXY 7 A1DXY C6 C8 C 0 1 Y N N N N N -45.476 -29.720 4.171 1.104 -0.450 0.051 C6 A1DXY 8 A1DXY C7 C9 C 0 1 N N N N N N -43.550 -29.184 1.399 4.391 -0.841 1.166 C7 A1DXY 9 A1DXY C8 C10 C 0 1 N N N N N N -42.418 -29.951 0.712 5.787 -0.326 0.745 C8 A1DXY 10 A1DXY C9 C11 C 0 1 N N N N N N -42.168 -31.188 1.592 5.422 0.745 -0.308 C9 A1DXY 11 A1DXY N1 N1 N 0 1 N N N N N N -50.117 -29.542 7.374 -4.861 -0.524 -0.188 N1 A1DXY 12 A1DXY N2 N2 N 0 1 N N N N N N -47.950 -29.291 6.866 -2.547 -0.807 -0.063 N2 A1DXY 13 A1DXY N3 N3 N 0 1 N N N N N N -45.389 -29.988 2.814 2.263 -1.176 -0.174 N3 A1DXY 14 A1DXY N4 N4 N 0 1 N N N N N N -44.166 -30.206 2.222 3.514 -0.576 0.019 N4 A1DXY 15 A1DXY N5 N5 N 0 1 Y N N N N N -44.333 -29.583 4.867 1.169 0.823 0.436 N5 A1DXY 16 A1DXY N6 N6 N 0 1 Y N N N N N -45.609 -29.237 6.840 -1.127 1.000 0.489 N6 A1DXY 17 A1DXY O1 O1 O 0 1 N N N N N N -49.482 -29.651 5.211 -3.514 1.132 0.426 O1 A1DXY 18 A1DXY O2 O2 O 0 1 N N N N N N -43.779 -32.307 3.060 3.553 0.714 -1.846 O2 A1DXY 19 A1DXY H16 H1 H 0 1 N N N N N N -43.561 -29.210 6.731 0.159 2.551 0.964 H16 A1DXY 20 A1DXY H2 H2 H 0 1 N N N N N N -53.510 -28.922 6.916 -7.226 -0.828 -1.424 H2 A1DXY 21 A1DXY H1 H3 H 0 1 N N N N N N -52.450 -28.093 8.106 -7.380 -1.333 0.276 H1 A1DXY 22 A1DXY H3 H4 H 0 1 N N N N N N -52.172 -27.868 6.346 -8.178 0.155 -0.286 H3 A1DXY 23 A1DXY H4 H5 H 0 1 N N N N N N -51.893 -30.486 7.889 -5.962 1.183 -0.712 H4 A1DXY 24 A1DXY H5 H6 H 0 1 N N N N N N -51.614 -30.261 6.129 -6.116 0.678 0.988 H5 A1DXY 25 A1DXY H8 H7 H 0 1 N N N N N N -47.652 -29.748 4.213 -0.232 -2.065 -0.454 H8 A1DXY 26 A1DXY H10 H8 H 0 1 N N N N N N -43.157 -28.361 2.014 4.428 -1.910 1.374 H10 A1DXY 27 A1DXY H11 H9 H 0 1 N N N N N N -44.263 -28.783 0.663 4.039 -0.299 2.043 H11 A1DXY 28 A1DXY H12 H10 H 0 1 N N N N N N -42.719 -30.254 -0.302 6.309 0.120 1.592 H12 A1DXY 29 A1DXY H13 H11 H 0 1 N N N N N N -41.512 -29.330 0.655 6.380 -1.125 0.300 H13 A1DXY 30 A1DXY H15 H12 H 0 1 N N N N N N -41.993 -32.082 0.975 6.154 0.751 -1.116 H15 A1DXY 31 A1DXY H14 H13 H 0 1 N N N N N N -41.308 -31.029 2.260 5.357 1.730 0.156 H14 A1DXY 32 A1DXY H6 H14 H 0 1 N N N N N N -49.822 -29.388 8.317 -4.958 -1.446 -0.471 H6 A1DXY 33 A1DXY H7 H15 H 0 1 N N N N N N -47.876 -29.078 7.840 -2.649 -1.748 -0.274 H7 A1DXY 34 A1DXY H9 H16 H 0 1 N N N N N N -45.801 -29.209 2.341 2.208 -2.100 -0.465 H9 A1DXY 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DXY C8 C7 SING N N 1 A1DXY C8 C9 SING N N 2 A1DXY C7 N4 SING N N 3 A1DXY C9 C10 SING N N 4 A1DXY N4 C10 SING N N 5 A1DXY N4 N3 SING N N 6 A1DXY C10 O2 DOUB N N 7 A1DXY N3 C6 SING N N 8 A1DXY C6 C5 DOUB Y N 9 A1DXY C6 N5 SING Y N 10 A1DXY C5 C4 SING Y N 11 A1DXY N5 C11 DOUB Y N 12 A1DXY O1 C3 DOUB N N 13 A1DXY C4 N6 DOUB Y N 14 A1DXY C4 N2 SING N N 15 A1DXY C11 N6 SING Y N 16 A1DXY C3 N2 SING N N 17 A1DXY C3 N1 SING N N 18 A1DXY C2 C1 SING N N 19 A1DXY C2 N1 SING N N 20 A1DXY C11 H16 SING N N 21 A1DXY C1 H2 SING N N 22 A1DXY C1 H1 SING N N 23 A1DXY C1 H3 SING N N 24 A1DXY C2 H4 SING N N 25 A1DXY C2 H5 SING N N 26 A1DXY C5 H8 SING N N 27 A1DXY C7 H10 SING N N 28 A1DXY C7 H11 SING N N 29 A1DXY C8 H12 SING N N 30 A1DXY C8 H13 SING N N 31 A1DXY C9 H15 SING N N 32 A1DXY C9 H14 SING N N 33 A1DXY N1 H6 SING N N 34 A1DXY N2 H7 SING N N 35 A1DXY N3 H9 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DXY SMILES ACDLabs 14.52 "CCNC(=O)Nc1cc(ncn1)NN1CCCC1=O" A1DXY InChI InChI 1.06 "InChI=1S/C11H16N6O2/c1-2-12-11(19)15-8-6-9(14-7-13-8)16-17-5-3-4-10(17)18/h6-7H,2-5H2,1H3,(H3,12,13,14,15,16,19)" A1DXY InChIKey InChI 1.06 HXGUCRFOORJXRX-UHFFFAOYSA-N A1DXY SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)Nc1cc(NN2CCCC2=O)ncn1" A1DXY SMILES CACTVS 3.385 "CCNC(=O)Nc1cc(NN2CCCC2=O)ncn1" A1DXY SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCNC(=O)Nc1cc(ncn1)NN2CCCC2=O" A1DXY SMILES "OpenEye OEToolkits" 3.1.0.0 "CCNC(=O)Nc1cc(ncn1)NN2CCCC2=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DXY "SYSTEMATIC NAME" ACDLabs 14.52 "N-ethyl-N'-{6-[(2-oxopyrrolidin-1-yl)amino]pyrimidin-4-yl}urea" A1DXY "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-ethyl-3-[6-[(2-oxidanylidenepyrrolidin-1-yl)amino]pyrimidin-4-yl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DXY "Create component" 2026-08-25 RCSB A1DXY "Initial release" 2026-11-04 RCSB #