data_A1DXZ # _chem_comp.id A1DXZ _chem_comp.name "N-[(pyrimidin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H10 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 254.247 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DXZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15EU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DXZ C11 C1 C 0 1 Y N N N N N -48.313 -28.878 4.751 3.490 1.552 -0.001 C11 A1DXZ 1 A1DXZ C12 C2 C 0 1 Y N N N N N -46.909 -29.124 4.974 2.835 0.250 0.000 C12 A1DXZ 2 A1DXZ C1 C3 C 0 1 N N N N N N -45.815 -29.565 2.702 0.379 0.764 -0.000 C1 A1DXZ 3 A1DXZ C10 C4 C 0 1 Y N N N N N -48.879 -28.652 5.982 4.816 1.322 -0.001 C10 A1DXZ 4 A1DXZ C2 C5 C 0 1 N N N N N N -44.629 -30.561 0.752 -2.005 1.266 -0.001 C2 A1DXZ 5 A1DXZ C3 C6 C 0 1 Y N N N N N -45.294 -31.887 0.424 -3.310 0.512 -0.001 C3 A1DXZ 6 A1DXZ C4 C7 C 0 1 Y N N N N N -45.427 -33.752 -0.895 -5.008 -0.476 -1.191 C4 A1DXZ 7 A1DXZ C5 C8 C 0 1 Y N N N N N -46.497 -34.243 -0.118 -5.625 -0.826 0.000 C5 A1DXZ 8 A1DXZ C6 C9 C 0 1 Y N N N N N -46.903 -33.433 0.961 -5.011 -0.470 1.190 C6 A1DXZ 9 A1DXZ C7 C10 C 0 1 Y N N N N N -45.753 -29.414 4.195 1.505 -0.198 0.001 C7 A1DXZ 10 A1DXZ C8 C11 C 0 1 Y N N N N N -44.496 -29.469 6.153 2.281 -2.370 0.002 C8 A1DXZ 11 A1DXZ C9 C12 C 0 1 Y N N N N N -46.678 -29.032 6.375 3.873 -0.713 0.000 C9 A1DXZ 12 A1DXZ N1 N1 N 0 1 N N N N N N -44.792 -30.252 2.165 -0.892 0.315 -0.000 N1 A1DXZ 13 A1DXZ N2 N2 N 0 1 Y N N N N N -44.823 -32.574 -0.622 -3.863 0.186 -1.152 N2 A1DXZ 14 A1DXZ N3 N3 N 0 1 Y N N N N N -46.298 -32.257 1.229 -3.866 0.192 1.151 N3 A1DXZ 15 A1DXZ N4 N4 N 0 1 Y N N N N N -44.560 -29.589 4.824 1.282 -1.511 0.001 N4 A1DXZ 16 A1DXZ N5 N5 N 0 1 Y N N N N N -45.484 -29.200 7.011 3.545 -1.997 0.001 N5 A1DXZ 17 A1DXZ N6 N6 N 0 1 Y N N N N N -47.895 -28.742 6.952 5.057 -0.025 -0.000 N6 A1DXZ 18 A1DXZ O1 O1 O 0 1 N N N N N N -46.751 -29.105 2.048 0.601 1.959 -0.001 O1 A1DXZ 19 A1DXZ H10 H1 H 0 1 N N N N N N -48.822 -28.873 3.798 3.004 2.516 -0.005 H10 A1DXZ 20 A1DXZ H9 H2 H 0 1 N N N N N N -49.922 -28.439 6.164 5.577 2.088 -0.002 H9 A1DXZ 21 A1DXZ H2 H3 H 0 1 N N N N N N -43.557 -30.624 0.515 -1.948 1.892 -0.891 H2 A1DXZ 22 A1DXZ H3 H4 H 0 1 N N N N N N -45.091 -29.764 0.150 -1.948 1.893 0.889 H3 A1DXZ 23 A1DXZ H4 H5 H 0 1 N N N N N N -45.079 -34.336 -1.735 -5.455 -0.741 -2.137 H4 A1DXZ 24 A1DXZ H5 H6 H 0 1 N N N N N N -46.977 -35.185 -0.337 -6.560 -1.366 0.000 H5 A1DXZ 25 A1DXZ H6 H7 H 0 1 N N N N N N -47.718 -33.761 1.589 -5.463 -0.726 2.137 H6 A1DXZ 26 A1DXZ H7 H8 H 0 1 N N N N N N -43.518 -29.607 6.591 2.054 -3.426 0.003 H7 A1DXZ 27 A1DXZ H1 H9 H 0 1 N N N N N N -44.083 -30.579 2.789 -1.069 -0.639 0.001 H1 A1DXZ 28 A1DXZ H8 H10 H 0 1 N N N N N N -48.046 -28.615 7.932 5.937 -0.433 -0.000 H8 A1DXZ 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DXZ C4 N2 DOUB Y N 1 A1DXZ C4 C5 SING Y N 2 A1DXZ N2 C3 SING Y N 3 A1DXZ C5 C6 DOUB Y N 4 A1DXZ C3 C2 SING N N 5 A1DXZ C3 N3 DOUB Y N 6 A1DXZ C2 N1 SING N N 7 A1DXZ C6 N3 SING Y N 8 A1DXZ O1 C1 DOUB N N 9 A1DXZ N1 C1 SING N N 10 A1DXZ C1 C7 SING N N 11 A1DXZ C7 N4 DOUB Y N 12 A1DXZ C7 C12 SING Y N 13 A1DXZ C11 C12 SING Y N 14 A1DXZ C11 C10 DOUB Y N 15 A1DXZ N4 C8 SING Y N 16 A1DXZ C12 C9 DOUB Y N 17 A1DXZ C10 N6 SING Y N 18 A1DXZ C8 N5 DOUB Y N 19 A1DXZ C9 N6 SING Y N 20 A1DXZ C9 N5 SING Y N 21 A1DXZ C11 H10 SING N N 22 A1DXZ C10 H9 SING N N 23 A1DXZ C2 H2 SING N N 24 A1DXZ C2 H3 SING N N 25 A1DXZ C4 H4 SING N N 26 A1DXZ C5 H5 SING N N 27 A1DXZ C6 H6 SING N N 28 A1DXZ C8 H7 SING N N 29 A1DXZ N1 H1 SING N N 30 A1DXZ N6 H8 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DXZ SMILES ACDLabs 14.52 "O=C(NCc1ncccn1)c1ncnc2[NH]ccc12" A1DXZ InChI InChI 1.06 "InChI=1S/C12H10N6O/c19-12(16-6-9-13-3-1-4-14-9)10-8-2-5-15-11(8)18-7-17-10/h1-5,7H,6H2,(H,16,19)(H,15,17,18)" A1DXZ InChIKey InChI 1.06 BDKAPGQSFULQIU-UHFFFAOYSA-N A1DXZ SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1ncccn1)c2ncnc3[nH]ccc23" A1DXZ SMILES CACTVS 3.385 "O=C(NCc1ncccn1)c2ncnc3[nH]ccc23" A1DXZ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cnc(nc1)CNC(=O)c2c3cc[nH]c3ncn2" A1DXZ SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cnc(nc1)CNC(=O)c2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DXZ "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(pyrimidin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1DXZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(pyrimidin-2-ylmethyl)-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DXZ "Create component" 2026-08-25 RCSB A1DXZ "Initial release" 2026-11-04 RCSB #