data_A1DYD # _chem_comp.id A1DYD _chem_comp.name "[(3R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-3-yl]acetic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DYD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15JV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DYD C11 C1 C 0 1 Y N N N N N -48.061 -29.034 4.458 -2.039 0.334 0.006 C11 A1DYD 1 A1DYD C12 C2 C 0 1 N N N N N N -45.490 -29.545 2.944 0.673 -0.397 0.806 C12 A1DYD 2 A1DYD C1 C3 C 0 1 N N N N N N -43.708 -32.032 2.741 4.437 0.178 0.273 C1 A1DYD 3 A1DYD C10 C4 C 0 1 Y N N N N N -47.151 -29.178 5.574 -1.551 1.711 -0.036 C10 A1DYD 4 A1DYD C2 C5 C 0 1 N N N N N N -43.985 -31.138 1.521 3.191 -0.478 0.811 C2 A1DYD 5 A1DYD C3 C6 C 0 1 N N R N N N -44.459 -29.691 1.811 1.959 0.172 0.179 C3 A1DYD 6 A1DYD C4 C7 C 0 1 N N N N N N -45.113 -29.055 0.577 1.871 -0.189 -1.322 C4 A1DYD 7 A1DYD C5 C8 C 0 1 N N N N N N -46.546 -28.675 0.964 0.352 -0.408 -1.537 C5 A1DYD 8 A1DYD C6 C9 C 0 1 Y N N N N N -47.963 -28.990 3.038 -1.446 -0.934 -0.090 C6 A1DYD 9 A1DYD C7 C10 C 0 1 Y N N N N N -50.287 -28.745 2.966 -3.533 -1.883 0.177 C7 A1DYD 10 A1DYD C8 C11 C 0 1 Y N N N N N -49.379 -28.925 4.992 -3.431 0.415 0.194 C8 A1DYD 11 A1DYD C9 C12 C 0 1 Y N N N N N -47.902 -29.147 6.717 -2.622 2.507 0.122 C9 A1DYD 12 A1DYD N1 N1 N 0 1 N N N N N N -46.727 -29.080 2.346 -0.082 -1.067 -0.275 N1 A1DYD 13 A1DYD N2 N2 N 0 1 Y N N N N N -49.116 -28.832 2.326 -2.229 -2.006 0.000 N2 A1DYD 14 A1DYD N3 N3 N 0 1 Y N N N N N -50.533 -28.773 4.278 -4.131 -0.715 0.268 N3 A1DYD 15 A1DYD N4 N4 N 0 1 Y N N N N N -49.233 -28.991 6.364 -3.752 1.744 0.260 N4 A1DYD 16 A1DYD O1 O1 O 0 1 N N N N N N -44.036 -33.235 2.645 4.348 1.074 -0.533 O1 A1DYD 17 A1DYD O2 O2 O 0 1 N N N N N N -43.163 -31.537 3.748 5.645 -0.233 0.689 O2 A1DYD 18 A1DYD H13 H1 H 0 1 N N N N N N -45.651 -30.517 3.434 0.927 -1.118 1.583 H13 A1DYD 19 A1DYD H12 H2 H 0 1 N N N N N N -45.133 -28.815 3.686 0.077 0.411 1.230 H12 A1DYD 20 A1DYD H11 H3 H 0 1 N N N N N N -46.078 -29.289 5.515 -0.527 2.027 -0.167 H11 A1DYD 21 A1DYD H1 H4 H 0 1 N N N N N N -44.763 -31.629 0.918 3.207 -1.540 0.567 H1 A1DYD 22 A1DYD H2 H5 H 0 1 N N N N N N -43.055 -31.073 0.937 3.153 -0.354 1.893 H2 A1DYD 23 A1DYD H3 H6 H 0 1 N N N N N N -43.575 -29.092 2.076 1.995 1.254 0.307 H3 A1DYD 24 A1DYD H4 H7 H 0 1 N N N N N N -45.126 -29.775 -0.255 2.234 0.632 -1.940 H4 A1DYD 25 A1DYD H5 H8 H 0 1 N N N N N N -44.554 -28.157 0.276 2.426 -1.104 -1.529 H5 A1DYD 26 A1DYD H7 H9 H 0 1 N N N N N N -46.690 -27.589 0.865 -0.160 0.545 -1.666 H7 A1DYD 27 A1DYD H6 H10 H 0 1 N N N N N N -47.265 -29.200 0.318 0.175 -1.060 -2.392 H6 A1DYD 28 A1DYD H8 H11 H 0 1 N N N N N N -51.155 -28.637 2.333 -4.133 -2.779 0.241 H8 A1DYD 29 A1DYD H10 H12 H 0 1 N N N N N N -47.522 -29.230 7.724 -2.596 3.586 0.137 H10 A1DYD 30 A1DYD H9 H13 H 0 1 N N N N N N -49.988 -28.934 7.017 -4.648 2.094 0.386 H9 A1DYD 31 A1DYD H14 H14 H 0 1 N N N N N N -43.044 -32.210 4.408 6.415 0.219 0.317 H14 A1DYD 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DYD C4 C5 SING N N 1 A1DYD C4 C3 SING N N 2 A1DYD C5 N1 SING N N 3 A1DYD C2 C3 SING N N 4 A1DYD C2 C1 SING N N 5 A1DYD C3 C12 SING N N 6 A1DYD N2 C7 DOUB Y N 7 A1DYD N2 C6 SING Y N 8 A1DYD N1 C12 SING N N 9 A1DYD N1 C6 SING N N 10 A1DYD O1 C1 DOUB N N 11 A1DYD C1 O2 SING N N 12 A1DYD C7 N3 SING Y N 13 A1DYD C6 C11 DOUB Y N 14 A1DYD N3 C8 DOUB Y N 15 A1DYD C11 C8 SING Y N 16 A1DYD C11 C10 SING Y N 17 A1DYD C8 N4 SING Y N 18 A1DYD C10 C9 DOUB Y N 19 A1DYD N4 C9 SING Y N 20 A1DYD C12 H13 SING N N 21 A1DYD C12 H12 SING N N 22 A1DYD C10 H11 SING N N 23 A1DYD C2 H1 SING N N 24 A1DYD C2 H2 SING N N 25 A1DYD C3 H3 SING N N 26 A1DYD C4 H4 SING N N 27 A1DYD C4 H5 SING N N 28 A1DYD C5 H7 SING N N 29 A1DYD C5 H6 SING N N 30 A1DYD C7 H8 SING N N 31 A1DYD C9 H10 SING N N 32 A1DYD N4 H9 SING N N 33 A1DYD O2 H14 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DYD SMILES ACDLabs 14.52 "O=C(O)CC1CCN(C1)c1ncnc2[NH]ccc12" A1DYD InChI InChI 1.06 "InChI=1S/C12H14N4O2/c17-10(18)5-8-2-4-16(6-8)12-9-1-3-13-11(9)14-7-15-12/h1,3,7-8H,2,4-6H2,(H,17,18)(H,13,14,15)/t8-/m1/s1" A1DYD InChIKey InChI 1.06 QLVNYDNTSVYVFH-MRVPVSSYSA-N A1DYD SMILES_CANONICAL CACTVS 3.385 "OC(=O)C[C@H]1CCN(C1)c2ncnc3[nH]ccc23" A1DYD SMILES CACTVS 3.385 "OC(=O)C[CH]1CCN(C1)c2ncnc3[nH]ccc23" A1DYD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC[C@@H](C3)CC(=O)O" A1DYD SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC(C3)CC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DYD "SYSTEMATIC NAME" ACDLabs 14.52 "[(3R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-3-yl]acetic acid" A1DYD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[(3~{R})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-3-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DYD "Create component" 2026-08-25 RCSB A1DYD "Initial release" 2026-11-04 RCSB #