data_A1DYF # _chem_comp.id A1DYF _chem_comp.name "4-[(3S)-3-(1,3-dioxolan-2-yl)pyrrolidin-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DYF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15LB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DYF C13 C1 C 0 1 Y N N N N N -44.347 -29.373 6.219 3.884 1.393 -0.756 C13 A1DYF 1 A1DYF C11 C2 C 0 1 Y N N N N N -48.757 -28.728 6.014 2.124 -2.579 0.358 C11 A1DYF 2 A1DYF C12 C3 C 0 1 Y N N N N N -46.544 -29.052 6.411 3.316 -0.783 -0.267 C12 A1DYF 3 A1DYF C1 C4 C 0 1 Y N N N N N -45.550 -29.213 4.223 1.727 1.022 -0.024 C1 A1DYF 4 A1DYF C10 C5 C 0 1 Y N N N N N -48.158 -28.823 4.782 1.280 -1.541 0.471 C10 A1DYF 5 A1DYF C2 C6 C 0 1 N N N N N N -46.606 -28.897 1.945 0.140 1.206 1.707 C2 A1DYF 6 A1DYF C3 C7 C 0 1 N N N N N N -46.290 -29.531 0.593 -1.177 0.403 1.708 C3 A1DYF 7 A1DYF C4 C8 C 0 1 N N S N N N -44.799 -29.888 0.623 -1.816 0.776 0.345 C4 A1DYF 8 A1DYF C5 C9 C 0 1 N N N N N N -44.318 -29.630 2.056 -0.567 0.897 -0.563 C5 A1DYF 9 A1DYF C6 C10 C 0 1 N N N N N N -44.576 -31.360 0.253 -2.745 -0.335 -0.148 C6 A1DYF 10 A1DYF C7 C11 C 0 1 N N N N N N -45.658 -33.259 0.550 -5.049 -0.282 0.087 C7 A1DYF 11 A1DYF C8 C12 C 0 1 N N N N N N -46.137 -32.625 -0.750 -4.654 -0.494 -1.396 C8 A1DYF 12 A1DYF C9 C13 C 0 1 Y N N N N N -46.742 -29.035 4.998 2.021 -0.347 0.069 C9 A1DYF 13 A1DYF N1 N1 N 0 1 N N N N N N -45.488 -29.233 2.813 0.470 1.501 0.301 N1 A1DYF 14 A1DYF N2 N2 N 0 1 Y N N N N N -47.783 -28.861 6.988 3.345 -2.138 -0.082 N2 A1DYF 15 A1DYF N3 N3 N 0 1 Y N N N N N -45.363 -29.220 7.068 4.207 0.120 -0.673 N3 A1DYF 16 A1DYF N4 N4 N 0 1 Y N N N N N -44.373 -29.378 4.883 2.682 1.846 -0.444 N4 A1DYF 17 A1DYF O1 O1 O 0 1 N N N N N N -45.177 -32.132 1.232 -3.813 -0.521 0.790 O1 A1DYF 18 A1DYF O2 O2 O 0 1 N N N N N N -45.164 -31.628 -0.979 -3.305 0.032 -1.420 O2 A1DYF 19 A1DYF H16 H1 H 0 1 N N N N N N -43.375 -29.511 6.670 4.632 2.096 -1.088 H16 A1DYF 20 A1DYF H14 H2 H 0 1 N N N N N N -49.811 -28.575 6.193 1.878 -3.606 0.582 H14 A1DYF 21 A1DYF H13 H3 H 0 1 N N N N N N -48.653 -28.752 3.825 0.253 -1.579 0.805 H13 A1DYF 22 A1DYF H2 H4 H 0 1 N N N N N N -46.698 -27.805 1.844 0.007 2.136 2.260 H2 A1DYF 23 A1DYF H1 H5 H 0 1 N N N N N N -47.542 -29.307 2.351 0.937 0.617 2.159 H1 A1DYF 24 A1DYF H4 H6 H 0 1 N N N N N N -46.495 -28.818 -0.219 -0.976 -0.668 1.759 H4 A1DYF 25 A1DYF H3 H7 H 0 1 N N N N N N -46.896 -30.437 0.446 -1.819 0.715 2.533 H3 A1DYF 26 A1DYF H5 H8 H 0 1 N N N N N N -44.248 -29.242 -0.076 -2.346 1.726 0.409 H5 A1DYF 27 A1DYF H7 H9 H 0 1 N N N N N N -43.882 -30.546 2.482 -0.249 -0.087 -0.905 H7 A1DYF 28 A1DYF H6 H10 H 0 1 N N N N N N -43.567 -28.826 2.067 -0.777 1.546 -1.413 H6 A1DYF 29 A1DYF H8 H11 H 0 1 N N N N N N -43.494 -31.553 0.215 -2.183 -1.263 -0.252 H8 A1DYF 30 A1DYF H9 H12 H 0 1 N N N N N N -46.484 -33.739 1.094 -5.394 0.739 0.251 H9 A1DYF 31 A1DYF H10 H13 H 0 1 N N N N N N -44.860 -33.995 0.371 -5.811 -0.999 0.391 H10 A1DYF 32 A1DYF H12 H14 H 0 1 N N N N N N -47.138 -32.184 -0.632 -4.665 -1.553 -1.655 H12 A1DYF 33 A1DYF H11 H15 H 0 1 N N N N N N -46.154 -33.360 -1.568 -5.307 0.074 -2.059 H11 A1DYF 34 A1DYF H15 H16 H 0 1 N N N N N N -47.953 -28.824 7.973 4.117 -2.704 -0.240 H15 A1DYF 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DYF O2 C8 SING N N 1 A1DYF O2 C6 SING N N 2 A1DYF C8 C7 SING N N 3 A1DYF C6 C4 SING N N 4 A1DYF C6 O1 SING N N 5 A1DYF C7 O1 SING N N 6 A1DYF C3 C4 SING N N 7 A1DYF C3 C2 SING N N 8 A1DYF C4 C5 SING N N 9 A1DYF C2 N1 SING N N 10 A1DYF C5 N1 SING N N 11 A1DYF N1 C1 SING N N 12 A1DYF C1 N4 DOUB Y N 13 A1DYF C1 C9 SING Y N 14 A1DYF C10 C9 SING Y N 15 A1DYF C10 C11 DOUB Y N 16 A1DYF N4 C13 SING Y N 17 A1DYF C9 C12 DOUB Y N 18 A1DYF C11 N2 SING Y N 19 A1DYF C13 N3 DOUB Y N 20 A1DYF C12 N2 SING Y N 21 A1DYF C12 N3 SING Y N 22 A1DYF C13 H16 SING N N 23 A1DYF C11 H14 SING N N 24 A1DYF C10 H13 SING N N 25 A1DYF C2 H2 SING N N 26 A1DYF C2 H1 SING N N 27 A1DYF C3 H4 SING N N 28 A1DYF C3 H3 SING N N 29 A1DYF C4 H5 SING N N 30 A1DYF C5 H7 SING N N 31 A1DYF C5 H6 SING N N 32 A1DYF C6 H8 SING N N 33 A1DYF C7 H9 SING N N 34 A1DYF C7 H10 SING N N 35 A1DYF C8 H12 SING N N 36 A1DYF C8 H11 SING N N 37 A1DYF N2 H15 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DYF SMILES ACDLabs 14.52 "C1CC(CN1c1ncnc2[NH]ccc21)C1OCCO1" A1DYF InChI InChI 1.06 "InChI=1S/C13H16N4O2/c1-3-14-11-10(1)12(16-8-15-11)17-4-2-9(7-17)13-18-5-6-19-13/h1,3,8-9,13H,2,4-7H2,(H,14,15,16)/t9-/m0/s1" A1DYF InChIKey InChI 1.06 ZIZZCCBHNGVPCL-VIFPVBQESA-N A1DYF SMILES_CANONICAL CACTVS 3.385 "C1COC(O1)[C@H]2CCN(C2)c3ncnc4[nH]ccc34" A1DYF SMILES CACTVS 3.385 "C1COC(O1)[CH]2CCN(C2)c3ncnc4[nH]ccc34" A1DYF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC[C@@H](C3)C4OCCO4" A1DYF SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC(C3)C4OCCO4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DYF "SYSTEMATIC NAME" ACDLabs 14.52 "4-[(3S)-3-(1,3-dioxolan-2-yl)pyrrolidin-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" A1DYF "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[(3~{S})-3-(1,3-dioxolan-2-yl)pyrrolidin-1-yl]-7~{H}-pyrrolo[2,3-d]pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DYF "Create component" 2026-08-25 RCSB A1DYF "Initial release" 2026-11-04 RCSB #