data_A1DYI # _chem_comp.id A1DYI _chem_comp.name "(1S)-1-cyclopentyl-N~1~-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)ethane-1,2-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 245.323 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DYI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15MG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DYI C13 C1 C 0 1 N N N N N N -43.404 -31.948 2.216 -3.217 -0.420 0.962 C13 A1DYI 1 A1DYI C11 C2 C 0 1 N N N N N N -41.690 -32.770 0.693 -4.002 -1.602 -1.060 C11 A1DYI 2 A1DYI C12 C3 C 0 1 N N N N N N -42.811 -33.230 1.632 -3.925 -1.697 0.478 C12 A1DYI 3 A1DYI C1 C4 C 0 1 N N N N N N -43.081 -28.390 0.531 -1.590 2.117 0.981 C1 A1DYI 4 A1DYI C10 C5 C 0 1 N N N N N N -41.818 -31.245 0.575 -2.848 -0.639 -1.439 C10 A1DYI 5 A1DYI C2 C6 C 0 1 N N S N N N -43.319 -29.421 1.651 -1.526 1.090 -0.151 C2 A1DYI 6 A1DYI C3 C7 C 0 1 Y N N N N N -44.819 -29.173 3.648 0.819 0.322 -0.159 C3 A1DYI 7 A1DYI C4 C8 C 0 1 Y N N N N N -43.947 -29.269 5.799 2.451 1.692 -1.043 C4 A1DYI 8 A1DYI C5 C9 C 0 1 Y N N N N N -46.144 -28.940 5.636 3.144 -0.338 -0.208 C5 A1DYI 9 A1DYI C6 C10 C 0 1 Y N N N N N -48.248 -28.631 4.846 3.101 -2.371 0.740 C6 A1DYI 10 A1DYI C7 C11 C 0 1 Y N N N N N -47.450 -28.775 3.737 1.824 -1.956 0.743 C7 A1DYI 11 A1DYI C8 C12 C 0 1 Y N N N N N -46.105 -28.970 4.216 1.809 -0.629 0.130 C8 A1DYI 12 A1DYI C9 C13 C 0 1 N N N N N N -43.200 -30.875 1.134 -2.887 0.407 -0.298 C9 A1DYI 13 A1DYI N1 N1 N 0 1 N N N N N N -44.637 -29.224 2.258 -0.506 0.084 0.160 N1 A1DYI 14 A1DYI N2 N2 N 0 1 Y N N N N N -43.756 -29.313 4.479 1.186 1.459 -0.742 N2 A1DYI 15 A1DYI N3 N3 N 0 1 Y N N N N N -45.081 -29.088 6.475 3.412 0.830 -0.791 N3 A1DYI 16 A1DYI N4 N4 N 0 1 Y N N N N N -47.463 -28.732 5.981 3.900 -1.411 0.174 N4 A1DYI 17 A1DYI N5 N5 N 0 1 N N N N N N -42.925 -27.028 1.066 -0.254 2.686 1.203 N5 A1DYI 18 A1DYI H18 H1 H 0 1 N N N N N N -42.879 -31.667 3.141 -3.877 0.147 1.619 H18 A1DYI 19 A1DYI H17 H2 H 0 1 N N N N N N -44.475 -32.081 2.429 -2.299 -0.679 1.489 H17 A1DYI 20 A1DYI H14 H3 H 0 1 N N N N N N -41.806 -33.239 -0.295 -3.845 -2.582 -1.511 H14 A1DYI 21 A1DYI H13 H4 H 0 1 N N N N N N -40.709 -33.038 1.113 -4.963 -1.191 -1.369 H13 A1DYI 22 A1DYI H16 H5 H 0 1 N N N N N N -43.576 -33.788 1.073 -3.350 -2.576 0.770 H16 A1DYI 23 A1DYI H15 H6 H 0 1 N N N N N N -42.405 -33.866 2.433 -4.929 -1.750 0.900 H15 A1DYI 24 A1DYI H2 H7 H 0 1 N N N N N N -43.940 -28.406 -0.156 -2.284 2.913 0.711 H2 A1DYI 25 A1DYI H3 H8 H 0 1 N N N N N N -42.167 -28.664 -0.017 -1.934 1.630 1.894 H3 A1DYI 26 A1DYI H11 H9 H 0 1 N N N N N N -41.028 -30.752 1.160 -1.893 -1.165 -1.449 H11 A1DYI 27 A1DYI H12 H10 H 0 1 N N N N N N -41.740 -30.938 -0.478 -3.040 -0.167 -2.403 H12 A1DYI 28 A1DYI H4 H11 H 0 1 N N N N N N -42.546 -29.272 2.419 -1.269 1.592 -1.083 H4 A1DYI 29 A1DYI H6 H12 H 0 1 N N N N N N -43.061 -29.398 6.402 2.707 2.628 -1.516 H6 A1DYI 30 A1DYI H8 H13 H 0 1 N N N N N N -49.315 -28.466 4.834 3.447 -3.318 1.127 H8 A1DYI 31 A1DYI H9 H14 H 0 1 N N N N N N -47.769 -28.747 2.706 0.972 -2.499 1.124 H9 A1DYI 32 A1DYI H10 H15 H 0 1 N N N N N N -43.950 -31.026 0.344 -3.666 1.147 -0.485 H10 A1DYI 33 A1DYI H5 H16 H 0 1 N N N N N N -44.983 -28.357 1.899 -0.761 -0.748 0.589 H5 A1DYI 34 A1DYI H7 H17 H 0 1 N N N N N N -47.804 -28.664 6.919 4.861 -1.483 0.060 H7 A1DYI 35 A1DYI H1 H18 H 0 1 N N N N N N -42.773 -26.389 0.312 -0.270 3.368 1.946 H1 A1DYI 36 A1DYI H20 H19 H 0 1 N N N N N N -43.754 -26.768 1.561 0.421 1.961 1.392 H20 A1DYI 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DYI C1 N5 SING N N 1 A1DYI C1 C2 SING N N 2 A1DYI C10 C11 SING N N 3 A1DYI C10 C9 SING N N 4 A1DYI C11 C12 SING N N 5 A1DYI C9 C2 SING N N 6 A1DYI C9 C13 SING N N 7 A1DYI C12 C13 SING N N 8 A1DYI C2 N1 SING N N 9 A1DYI N1 C3 SING N N 10 A1DYI C3 C8 DOUB Y N 11 A1DYI C3 N2 SING Y N 12 A1DYI C7 C8 SING Y N 13 A1DYI C7 C6 DOUB Y N 14 A1DYI C8 C5 SING Y N 15 A1DYI N2 C4 DOUB Y N 16 A1DYI C6 N4 SING Y N 17 A1DYI C5 N4 SING Y N 18 A1DYI C5 N3 DOUB Y N 19 A1DYI C4 N3 SING Y N 20 A1DYI C13 H18 SING N N 21 A1DYI C13 H17 SING N N 22 A1DYI C11 H14 SING N N 23 A1DYI C11 H13 SING N N 24 A1DYI C12 H16 SING N N 25 A1DYI C12 H15 SING N N 26 A1DYI C1 H2 SING N N 27 A1DYI C1 H3 SING N N 28 A1DYI C10 H11 SING N N 29 A1DYI C10 H12 SING N N 30 A1DYI C2 H4 SING N N 31 A1DYI C4 H6 SING N N 32 A1DYI C6 H8 SING N N 33 A1DYI C7 H9 SING N N 34 A1DYI C9 H10 SING N N 35 A1DYI N1 H5 SING N N 36 A1DYI N4 H7 SING N N 37 A1DYI N5 H1 SING N N 38 A1DYI N5 H20 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DYI SMILES ACDLabs 14.52 "NCC(Nc1ncnc2[NH]ccc21)C1CCCC1" A1DYI InChI InChI 1.06 "InChI=1S/C13H19N5/c14-7-11(9-3-1-2-4-9)18-13-10-5-6-15-12(10)16-8-17-13/h5-6,8-9,11H,1-4,7,14H2,(H2,15,16,17,18)/t11-/m1/s1" A1DYI InChIKey InChI 1.06 RYQVXGQJROUMAV-LLVKDONJSA-N A1DYI SMILES_CANONICAL CACTVS 3.385 "NC[C@@H](Nc1ncnc2[nH]ccc12)C3CCCC3" A1DYI SMILES CACTVS 3.385 "NC[CH](Nc1ncnc2[nH]ccc12)C3CCCC3" A1DYI SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N[C@H](CN)C3CCCC3" A1DYI SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC(CN)C3CCCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DYI "SYSTEMATIC NAME" ACDLabs 14.52 "(1S)-1-cyclopentyl-N~1~-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)ethane-1,2-diamine" A1DYI "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{S})-1-cyclopentyl-~{N}-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)ethane-1,2-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DYI "Create component" 2026-08-25 RCSB A1DYI "Initial release" 2026-11-04 RCSB #