data_A1DYJ # _chem_comp.id A1DYJ _chem_comp.name "(2R)-2-({6-[(cyclopropylmethyl)amino]pyrimidin-4-yl}amino)-3-methylbutan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 250.340 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DYJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15MH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DYJ C13 C1 C 0 1 Y N N N N N -44.285 -29.750 6.454 -0.307 3.439 -0.056 C13 A1DYJ 1 A1DYJ C11 C2 C 0 1 N N N N N N -50.837 -30.759 6.311 -4.479 -2.597 0.555 C11 A1DYJ 2 A1DYJ C12 C3 C 0 1 N N N N N N -49.643 -31.181 7.095 -4.772 -1.946 -0.798 C12 A1DYJ 3 A1DYJ C1 C4 C 0 1 N N N N N N -41.897 -30.948 0.730 3.672 -0.507 1.976 C1 A1DYJ 4 A1DYJ C10 C5 C 0 1 N N N N N N -49.460 -30.306 5.875 -4.226 -1.101 0.355 C10 A1DYJ 5 A1DYJ C2 C6 C 0 1 N N N N N N -43.218 -30.313 1.199 3.458 -1.135 0.597 C2 A1DYJ 6 A1DYJ C3 C7 C 0 1 N N N N N N -43.008 -28.799 1.388 3.463 -2.660 0.724 C3 A1DYJ 7 A1DYJ C4 C8 C 0 1 N N R N N N -43.750 -30.989 2.489 2.114 -0.675 0.029 C4 A1DYJ 8 A1DYJ C5 C9 C 0 1 N N N N N N -43.956 -32.513 2.338 1.929 -1.252 -1.375 C5 A1DYJ 9 A1DYJ C6 C10 C 0 1 Y N N N N N -45.143 -30.014 4.346 0.876 1.462 -0.010 C6 A1DYJ 10 A1DYJ C7 C11 C 0 1 Y N N N N N -46.415 -29.592 4.813 -0.321 0.758 0.080 C7 A1DYJ 11 A1DYJ C8 C12 C 0 1 Y N N N N N -46.513 -29.256 6.182 -1.510 1.480 0.104 C8 A1DYJ 12 A1DYJ C9 C13 C 0 1 N N N N N N -49.002 -28.870 6.046 -2.771 -0.637 0.263 C9 A1DYJ 13 A1DYJ N1 N1 N 0 1 N N N N N N -44.978 -30.365 2.992 2.088 0.789 -0.037 N1 A1DYJ 14 A1DYJ N2 N2 N 0 1 N N N N N N -47.727 -28.816 6.745 -2.729 0.826 0.193 N2 A1DYJ 15 A1DYJ N3 N3 N 0 1 Y N N N N N -45.434 -29.344 6.990 -1.461 2.809 0.029 N3 A1DYJ 16 A1DYJ N4 N4 N 0 1 Y N N N N N -44.075 -30.089 5.184 0.840 2.792 -0.075 N4 A1DYJ 17 A1DYJ O1 O1 O 0 1 N N N N N N -44.573 -33.095 3.469 3.046 -0.892 -2.190 O1 A1DYJ 18 A1DYJ H22 H1 H 0 1 N N N N N N -43.436 -29.811 7.118 -0.301 4.517 -0.115 H22 A1DYJ 19 A1DYJ H18 H2 H 0 1 N N N N N N -51.544 -30.032 6.737 -5.332 -2.885 1.170 H18 A1DYJ 20 A1DYJ H19 H3 H 0 1 N N N N N N -51.388 -31.497 5.710 -3.610 -3.250 0.622 H19 A1DYJ 21 A1DYJ H20 H4 H 0 1 N N N N N N -49.314 -32.230 7.071 -4.095 -2.171 -1.622 H20 A1DYJ 22 A1DYJ H21 H5 H 0 1 N N N N N N -49.471 -30.765 8.099 -5.817 -1.806 -1.074 H21 A1DYJ 23 A1DYJ H2 H6 H 0 1 N N N N N N -42.038 -32.030 0.592 4.629 -0.836 2.380 H2 A1DYJ 24 A1DYJ H1 H7 H 0 1 N N N N N N -41.591 -30.494 -0.224 3.669 0.579 1.885 H1 A1DYJ 25 A1DYJ H3 H8 H 0 1 N N N N N N -41.118 -30.773 1.486 2.869 -0.818 2.645 H3 A1DYJ 26 A1DYJ H17 H9 H 0 1 N N N N N N -49.059 -30.819 4.989 -4.912 -0.405 0.838 H17 A1DYJ 27 A1DYJ H4 H10 H 0 1 N N N N N N -43.967 -30.458 0.407 4.261 -0.824 -0.072 H4 A1DYJ 28 A1DYJ H7 H11 H 0 1 N N N N N N -43.948 -28.337 1.723 2.601 -2.978 1.311 H7 A1DYJ 29 A1DYJ H5 H12 H 0 1 N N N N N N -42.226 -28.629 2.143 3.411 -3.108 -0.268 H5 A1DYJ 30 A1DYJ H6 H13 H 0 1 N N N N N N -42.699 -28.350 0.433 4.379 -2.980 1.220 H6 A1DYJ 31 A1DYJ H8 H14 H 0 1 N N N N N N -42.973 -30.853 3.256 1.308 -1.024 0.675 H8 A1DYJ 32 A1DYJ H9 H15 H 0 1 N N N N N N -44.590 -32.697 1.458 1.858 -2.338 -1.315 H9 A1DYJ 33 A1DYJ H10 H16 H 0 1 N N N N N N -42.975 -32.988 2.189 1.015 -0.853 -1.815 H10 A1DYJ 34 A1DYJ H13 H17 H 0 1 N N N N N N -47.268 -29.531 4.153 -0.326 -0.321 0.135 H13 A1DYJ 35 A1DYJ H16 H18 H 0 1 N N N N N N -48.890 -28.406 5.055 -2.226 -0.974 1.145 H16 A1DYJ 36 A1DYJ H15 H19 H 0 1 N N N N N N -49.756 -28.317 6.626 -2.311 -1.057 -0.631 H15 A1DYJ 37 A1DYJ H12 H20 H 0 1 N N N N N N -45.096 -29.521 2.469 2.918 1.286 -0.100 H12 A1DYJ 38 A1DYJ H14 H21 H 0 1 N N N N N N -47.586 -27.855 6.982 -3.553 1.336 0.209 H14 A1DYJ 39 A1DYJ H11 H22 H 0 1 N N N N N N -44.677 -34.029 3.328 2.996 -1.226 -3.096 H11 A1DYJ 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DYJ C1 C2 SING N N 1 A1DYJ C2 C3 SING N N 2 A1DYJ C2 C4 SING N N 3 A1DYJ C5 C4 SING N N 4 A1DYJ C5 O1 SING N N 5 A1DYJ C4 N1 SING N N 6 A1DYJ N1 C6 SING N N 7 A1DYJ C6 C7 DOUB Y N 8 A1DYJ C6 N4 SING Y N 9 A1DYJ C7 C8 SING Y N 10 A1DYJ N4 C13 DOUB Y N 11 A1DYJ C10 C9 SING N N 12 A1DYJ C10 C11 SING N N 13 A1DYJ C10 C12 SING N N 14 A1DYJ C9 N2 SING N N 15 A1DYJ C8 N2 SING N N 16 A1DYJ C8 N3 DOUB Y N 17 A1DYJ C11 C12 SING N N 18 A1DYJ C13 N3 SING Y N 19 A1DYJ C13 H22 SING N N 20 A1DYJ C11 H18 SING N N 21 A1DYJ C11 H19 SING N N 22 A1DYJ C12 H20 SING N N 23 A1DYJ C12 H21 SING N N 24 A1DYJ C1 H2 SING N N 25 A1DYJ C1 H1 SING N N 26 A1DYJ C1 H3 SING N N 27 A1DYJ C10 H17 SING N N 28 A1DYJ C2 H4 SING N N 29 A1DYJ C3 H7 SING N N 30 A1DYJ C3 H5 SING N N 31 A1DYJ C3 H6 SING N N 32 A1DYJ C4 H8 SING N N 33 A1DYJ C5 H9 SING N N 34 A1DYJ C5 H10 SING N N 35 A1DYJ C7 H13 SING N N 36 A1DYJ C9 H16 SING N N 37 A1DYJ C9 H15 SING N N 38 A1DYJ N1 H12 SING N N 39 A1DYJ N2 H14 SING N N 40 A1DYJ O1 H11 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DYJ SMILES ACDLabs 14.52 "CC(C)C(CO)Nc1cc(NCC2CC2)ncn1" A1DYJ InChI InChI 1.06 "InChI=1S/C13H22N4O/c1-9(2)11(7-18)17-13-5-12(15-8-16-13)14-6-10-3-4-10/h5,8-11,18H,3-4,6-7H2,1-2H3,(H2,14,15,16,17)/t11-/m0/s1" A1DYJ InChIKey InChI 1.06 LGCOYFAWWUPMNB-NSHDSACASA-N A1DYJ SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](CO)Nc1cc(NCC2CC2)ncn1" A1DYJ SMILES CACTVS 3.385 "CC(C)[CH](CO)Nc1cc(NCC2CC2)ncn1" A1DYJ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)[C@H](CO)Nc1cc(ncn1)NCC2CC2" A1DYJ SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(CO)Nc1cc(ncn1)NCC2CC2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DYJ "SYSTEMATIC NAME" ACDLabs 14.52 "(2R)-2-({6-[(cyclopropylmethyl)amino]pyrimidin-4-yl}amino)-3-methylbutan-1-ol" A1DYJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{R})-2-[[6-(cyclopropylmethylamino)pyrimidin-4-yl]amino]-3-methyl-butan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DYJ "Create component" 2026-08-25 RCSB A1DYJ "Initial release" 2026-11-04 RCSB #