data_A1DYM # _chem_comp.id A1DYM _chem_comp.name "4-carbamamido-N-[(2S)-5-hydroxypentan-2-yl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 265.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DYM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15NW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DYM C13 C1 C 0 1 Y N N N N N -47.287 -29.503 4.864 -0.823 0.212 -0.296 C13 A1DYM 1 A1DYM C11 C2 C 0 1 N N N N N N -51.285 -29.080 7.736 -4.958 0.947 -0.424 C11 A1DYM 2 A1DYM C12 C3 C 0 1 Y N N N N N -47.914 -29.510 6.123 -2.128 0.641 -0.207 C12 A1DYM 3 A1DYM C1 C4 C 0 1 N N N N N N -43.936 -28.551 1.333 3.376 -2.210 -1.664 C1 A1DYM 4 A1DYM C10 C5 C 0 1 Y N N N N N -49.269 -29.116 6.254 -3.049 -0.079 0.548 C10 A1DYM 5 A1DYM C2 C6 C 0 1 N N S N N N -45.180 -29.432 1.143 3.256 -1.174 -0.544 C2 A1DYM 6 A1DYM C3 C7 C 0 1 N N N N N N -44.813 -30.890 0.804 4.167 0.015 -0.850 C3 A1DYM 7 A1DYM C4 C8 C 0 1 N N N N N N -46.027 -31.802 0.565 4.142 0.993 0.327 C4 A1DYM 8 A1DYM C5 C9 C 0 1 N N N N N N -45.691 -33.015 -0.312 5.054 2.183 0.021 C5 A1DYM 9 A1DYM C6 C10 C 0 1 N N N N N N -47.327 -29.119 2.365 0.973 -1.414 0.275 C6 A1DYM 10 A1DYM C7 C11 C 0 1 Y N N N N N -47.999 -29.118 3.709 -0.425 -0.951 0.368 C7 A1DYM 11 A1DYM C8 C12 C 0 1 Y N N N N N -49.352 -28.736 3.837 -1.354 -1.675 1.121 C8 A1DYM 12 A1DYM C9 C13 C 0 1 Y N N N N N -49.980 -28.744 5.097 -2.655 -1.234 1.215 C9 A1DYM 13 A1DYM N1 N1 N 0 1 N N N N N N -46.007 -29.380 2.345 1.867 -0.715 -0.452 N1 A1DYM 14 A1DYM N2 N2 N 0 1 N N N N N N -49.962 -29.110 7.496 -4.370 0.359 0.637 N2 A1DYM 15 A1DYM N3 N3 N 0 1 N N N N N N -51.547 -29.090 9.042 -6.261 1.286 -0.370 N3 A1DYM 16 A1DYM O1 O1 O 0 1 N N N N N N -44.968 -33.970 0.434 5.030 3.096 1.121 O1 A1DYM 17 A1DYM O2 O2 O 0 1 N N N N N N -47.981 -28.899 1.345 1.318 -2.426 0.853 O2 A1DYM 18 A1DYM O3 O3 O 0 1 N N N N N N -52.181 -29.044 6.896 -4.312 1.171 -1.430 O3 A1DYM 19 A1DYM H19 H1 H 0 1 N N N N N N -46.251 -29.795 4.781 -0.109 0.771 -0.882 H19 A1DYM 20 A1DYM H18 H2 H 0 1 N N N N N N -47.359 -29.818 6.997 -2.438 1.538 -0.723 H18 A1DYM 21 A1DYM H3 H3 H 0 1 N N N N N N -44.247 -27.523 1.572 3.079 -1.759 -2.610 H3 A1DYM 22 A1DYM H2 H4 H 0 1 N N N N N N -43.326 -28.951 2.157 4.409 -2.552 -1.732 H2 A1DYM 23 A1DYM H1 H5 H 0 1 N N N N N N -43.344 -28.548 0.406 2.727 -3.058 -1.446 H1 A1DYM 24 A1DYM H4 H6 H 0 1 N N N N N N -45.756 -29.025 0.298 3.553 -1.626 0.402 H4 A1DYM 25 A1DYM H5 H7 H 0 1 N N N N N N -44.230 -31.303 1.640 5.186 -0.338 -1.006 H5 A1DYM 26 A1DYM H6 H8 H 0 1 N N N N N N -44.197 -30.888 -0.107 3.816 0.521 -1.749 H6 A1DYM 27 A1DYM H7 H9 H 0 1 N N N N N N -46.815 -31.216 0.069 3.123 1.347 0.484 H7 A1DYM 28 A1DYM H8 H10 H 0 1 N N N N N N -46.394 -32.162 1.538 4.493 0.488 1.227 H8 A1DYM 29 A1DYM H10 H11 H 0 1 N N N N N N -45.084 -32.687 -1.168 6.073 1.829 -0.135 H10 A1DYM 30 A1DYM H9 H12 H 0 1 N N N N N N -46.624 -33.469 -0.677 4.702 2.688 -0.878 H9 A1DYM 31 A1DYM H13 H13 H 0 1 N N N N N N -49.909 -28.435 2.962 -1.049 -2.575 1.635 H13 A1DYM 32 A1DYM H14 H14 H 0 1 N N N N N N -51.019 -28.461 5.177 -3.372 -1.793 1.797 H14 A1DYM 33 A1DYM H12 H15 H 0 1 N N N N N N -45.558 -29.552 3.222 1.592 0.093 -0.913 H12 A1DYM 34 A1DYM H15 H16 H 0 1 N N N N N N -49.381 -29.131 8.309 -4.866 0.241 1.462 H15 A1DYM 35 A1DYM H16 H17 H 0 1 N N N N N N -52.494 -29.068 9.362 -6.776 1.108 0.433 H16 A1DYM 36 A1DYM H17 H18 H 0 1 N N N N N N -50.797 -29.120 9.702 -6.684 1.709 -1.133 H17 A1DYM 37 A1DYM H11 H19 H 0 1 N N N N N N -44.765 -34.716 -0.118 5.587 3.876 0.996 H11 A1DYM 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DYM C5 O1 SING N N 1 A1DYM C5 C4 SING N N 2 A1DYM C4 C3 SING N N 3 A1DYM C3 C2 SING N N 4 A1DYM C2 C1 SING N N 5 A1DYM C2 N1 SING N N 6 A1DYM O2 C6 DOUB N N 7 A1DYM N1 C6 SING N N 8 A1DYM C6 C7 SING N N 9 A1DYM C7 C8 DOUB Y N 10 A1DYM C7 C13 SING Y N 11 A1DYM C8 C9 SING Y N 12 A1DYM C13 C12 DOUB Y N 13 A1DYM C9 C10 DOUB Y N 14 A1DYM C12 C10 SING Y N 15 A1DYM C10 N2 SING N N 16 A1DYM O3 C11 DOUB N N 17 A1DYM N2 C11 SING N N 18 A1DYM C11 N3 SING N N 19 A1DYM C13 H19 SING N N 20 A1DYM C12 H18 SING N N 21 A1DYM C1 H3 SING N N 22 A1DYM C1 H2 SING N N 23 A1DYM C1 H1 SING N N 24 A1DYM C2 H4 SING N N 25 A1DYM C3 H5 SING N N 26 A1DYM C3 H6 SING N N 27 A1DYM C4 H7 SING N N 28 A1DYM C4 H8 SING N N 29 A1DYM C5 H10 SING N N 30 A1DYM C5 H9 SING N N 31 A1DYM C8 H13 SING N N 32 A1DYM C9 H14 SING N N 33 A1DYM N1 H12 SING N N 34 A1DYM N2 H15 SING N N 35 A1DYM N3 H16 SING N N 36 A1DYM N3 H17 SING N N 37 A1DYM O1 H11 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DYM SMILES ACDLabs 14.52 "O=C(N)Nc1ccc(cc1)C(=O)NC(C)CCCO" A1DYM InChI InChI 1.06 "InChI=1S/C13H19N3O3/c1-9(3-2-8-17)15-12(18)10-4-6-11(7-5-10)16-13(14)19/h4-7,9,17H,2-3,8H2,1H3,(H,15,18)(H3,14,16,19)/t9-/m0/s1" A1DYM InChIKey InChI 1.06 SGQHPYKZAHIVFZ-VIFPVBQESA-N A1DYM SMILES_CANONICAL CACTVS 3.385 "C[C@@H](CCCO)NC(=O)c1ccc(NC(N)=O)cc1" A1DYM SMILES CACTVS 3.385 "C[CH](CCCO)NC(=O)c1ccc(NC(N)=O)cc1" A1DYM SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H](CCCO)NC(=O)c1ccc(cc1)NC(=O)N" A1DYM SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(CCCO)NC(=O)c1ccc(cc1)NC(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DYM "SYSTEMATIC NAME" ACDLabs 14.52 "4-carbamamido-N-[(2S)-5-hydroxypentan-2-yl]benzamide" A1DYM "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-(aminocarbonylamino)-~{N}-[(2~{S})-5-oxidanylpentan-2-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DYM "Create component" 2026-08-25 RCSB A1DYM "Initial release" 2026-11-04 RCSB #