data_A1DYQ # _chem_comp.id A1DYQ _chem_comp.name "1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H13 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 231.254 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DYQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15EQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DYQ C11 C1 C 0 1 Y N N N N N -46.621 -29.246 4.962 2.012 0.449 -0.005 C11 A1DYQ 1 A1DYQ C1 C2 C 0 1 N N N N N N -43.877 -31.477 2.428 -2.224 -0.112 -0.938 C1 A1DYQ 2 A1DYQ C10 C3 C 0 1 Y N N N N N -48.002 -29.059 4.624 2.711 1.699 -0.297 C10 A1DYQ 3 A1DYQ C2 C4 C 0 1 N N N N N N -42.623 -31.913 1.673 -3.655 -0.565 -0.960 C2 A1DYQ 4 A1DYQ C3 C5 C 0 1 N N N N N N -42.176 -30.999 0.520 -4.242 -0.503 0.452 C3 A1DYQ 5 A1DYQ C4 C6 C 0 1 N N N N N N -42.347 -29.509 0.807 -3.915 0.869 1.054 C4 A1DYQ 6 A1DYQ C5 C7 C 0 1 N N N N N N -43.706 -29.160 1.414 -2.405 0.959 1.276 C5 A1DYQ 7 A1DYQ C6 C8 C 0 1 Y N N N N N -45.431 -29.568 4.294 0.668 0.065 0.113 C6 A1DYQ 8 A1DYQ C7 C9 C 0 1 Y N N N N N -44.294 -29.444 6.300 1.366 -2.090 0.555 C7 A1DYQ 9 A1DYQ C8 C10 C 0 1 Y N N N N N -46.492 -29.063 6.352 3.011 -0.526 0.176 C8 A1DYQ 10 A1DYQ C9 C11 C 0 1 Y N N N N N -48.656 -28.779 5.797 4.025 1.423 -0.277 C9 A1DYQ 11 A1DYQ N1 N1 N 0 1 N N N N N N -44.292 -30.208 2.260 -1.686 0.583 0.065 N1 A1DYQ 12 A1DYQ N2 N2 N 0 1 N N N N N N -45.429 -29.785 2.934 -0.350 0.986 -0.057 N2 A1DYQ 13 A1DYQ N3 N3 N 0 1 Y N N N N N -44.268 -29.650 4.982 0.397 -1.207 0.392 N3 A1DYQ 14 A1DYQ N4 N4 N 0 1 Y N N N N N -45.347 -29.165 7.064 2.639 -1.774 0.457 N4 A1DYQ 15 A1DYQ N5 N5 N 0 1 Y N N N N N -47.746 -28.784 6.840 4.217 0.096 0.005 N5 A1DYQ 16 A1DYQ O1 O1 O 0 1 N N N N N N -44.445 -32.284 3.169 -1.517 -0.397 -1.882 O1 A1DYQ 17 A1DYQ H13 H1 H 0 1 N N N N N N -48.441 -29.126 3.639 2.257 2.659 -0.492 H13 A1DYQ 18 A1DYQ H1 H2 H 0 1 N N N N N N -42.813 -32.913 1.255 -4.231 0.084 -1.620 H1 A1DYQ 19 A1DYQ H2 H3 H 0 1 N N N N N N -41.797 -31.969 2.397 -3.705 -1.590 -1.327 H2 A1DYQ 20 A1DYQ H4 H4 H 0 1 N N N N N N -42.770 -31.250 -0.371 -5.323 -0.636 0.407 H4 A1DYQ 21 A1DYQ H3 H5 H 0 1 N N N N N N -41.112 -31.192 0.318 -3.801 -1.288 1.067 H3 A1DYQ 22 A1DYQ H5 H6 H 0 1 N N N N N N -41.561 -29.197 1.510 -4.231 1.654 0.367 H5 A1DYQ 23 A1DYQ H6 H7 H 0 1 N N N N N N -42.235 -28.957 -0.138 -4.432 0.983 2.007 H6 A1DYQ 24 A1DYQ H8 H8 H 0 1 N N N N N N -43.584 -28.254 2.026 -2.142 1.980 1.552 H8 A1DYQ 25 A1DYQ H7 H9 H 0 1 N N N N N N -44.406 -28.954 0.590 -2.119 0.285 2.084 H7 A1DYQ 26 A1DYQ H10 H10 H 0 1 N N N N N N -43.344 -29.512 6.809 1.102 -3.112 0.784 H10 A1DYQ 27 A1DYQ H12 H11 H 0 1 N N N N N N -49.714 -28.585 5.892 4.812 2.141 -0.455 H12 A1DYQ 28 A1DYQ H9 H12 H 0 1 N N N N N N -45.699 -28.920 2.512 -0.139 1.910 -0.261 H9 A1DYQ 29 A1DYQ H11 H13 H 0 1 N N N N N N -47.967 -28.611 7.800 5.082 -0.339 0.074 H11 A1DYQ 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DYQ C3 C4 SING N N 1 A1DYQ C3 C2 SING N N 2 A1DYQ C4 C5 SING N N 3 A1DYQ C5 N1 SING N N 4 A1DYQ C2 C1 SING N N 5 A1DYQ N1 C1 SING N N 6 A1DYQ N1 N2 SING N N 7 A1DYQ C1 O1 DOUB N N 8 A1DYQ N2 C6 SING N N 9 A1DYQ C6 C11 DOUB Y N 10 A1DYQ C6 N3 SING Y N 11 A1DYQ C10 C11 SING Y N 12 A1DYQ C10 C9 DOUB Y N 13 A1DYQ C11 C8 SING Y N 14 A1DYQ N3 C7 DOUB Y N 15 A1DYQ C9 N5 SING Y N 16 A1DYQ C7 N4 SING Y N 17 A1DYQ C8 N5 SING Y N 18 A1DYQ C8 N4 DOUB Y N 19 A1DYQ C10 H13 SING N N 20 A1DYQ C2 H1 SING N N 21 A1DYQ C2 H2 SING N N 22 A1DYQ C3 H4 SING N N 23 A1DYQ C3 H3 SING N N 24 A1DYQ C4 H5 SING N N 25 A1DYQ C4 H6 SING N N 26 A1DYQ C5 H8 SING N N 27 A1DYQ C5 H7 SING N N 28 A1DYQ C7 H10 SING N N 29 A1DYQ C9 H12 SING N N 30 A1DYQ N2 H9 SING N N 31 A1DYQ N5 H11 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DYQ SMILES ACDLabs 14.52 "O=C1CCCCN1Nc1ncnc2[NH]ccc12" A1DYQ InChI InChI 1.06 "InChI=1S/C11H13N5O/c17-9-3-1-2-6-16(9)15-11-8-4-5-12-10(8)13-7-14-11/h4-5,7H,1-3,6H2,(H2,12,13,14,15)" A1DYQ InChIKey InChI 1.06 LJDKZQVMPIVXOP-UHFFFAOYSA-N A1DYQ SMILES_CANONICAL CACTVS 3.385 "O=C1CCCCN1Nc2ncnc3[nH]ccc23" A1DYQ SMILES CACTVS 3.385 "O=C1CCCCN1Nc2ncnc3[nH]ccc23" A1DYQ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NN3CCCCC3=O" A1DYQ SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NN3CCCCC3=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DYQ "SYSTEMATIC NAME" ACDLabs 14.52 "1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-2-one" A1DYQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)piperidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DYQ "Create component" 2026-08-25 RCSB A1DYQ "Initial release" 2026-11-04 RCSB #