data_A1DYR # _chem_comp.id A1DYR _chem_comp.name "(3R)-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H13 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 231.254 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15ER _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DYR C11 C1 C 0 1 Y N N N N N -46.422 -29.205 5.018 -2.006 0.504 -0.016 C11 A1DYR 1 A1DYR C1 C2 C 0 1 N N N N N N -44.057 -31.882 2.117 2.255 -0.525 -0.687 C1 A1DYR 2 A1DYR C10 C3 C 0 1 Y N N N N N -47.749 -28.915 4.542 -2.491 1.823 -0.416 C10 A1DYR 3 A1DYR C2 C4 C 0 1 N N N N N N -43.129 -31.472 -0.169 4.538 0.341 -0.343 C2 A1DYR 4 A1DYR C3 C5 C 0 1 N N N N N N -42.489 -30.154 0.293 4.070 0.644 1.081 C3 A1DYR 5 A1DYR C4 C6 C 0 1 N N N N N N -43.170 -29.491 1.496 2.652 1.237 1.015 C4 A1DYR 6 A1DYR C5 C7 C 0 1 N N R N N N -43.818 -30.428 2.549 1.698 0.139 0.539 C5 A1DYR 7 A1DYR C6 C8 C 0 1 Y N N N N N -45.183 -29.618 4.467 -0.749 -0.044 0.283 C6 A1DYR 8 A1DYR C7 C9 C 0 1 Y N N N N N -44.255 -29.548 6.595 -1.776 -2.070 0.687 C7 A1DYR 9 A1DYR C8 C10 C 0 1 Y N N N N N -46.417 -28.998 6.420 -3.140 -0.326 0.061 C8 A1DYR 10 A1DYR C9 C11 C 0 1 Y N N N N N -48.500 -28.558 5.637 -3.824 1.722 -0.552 C9 A1DYR 11 A1DYR N1 N1 N 0 1 N N N N N N -43.734 -32.276 0.883 3.534 -0.440 -1.054 N1 A1DYR 12 A1DYR N2 N2 N 0 1 N N N N N N -45.051 -29.860 3.094 0.395 0.731 0.222 N2 A1DYR 13 A1DYR N3 N3 N 0 1 Y N N N N N -44.110 -29.781 5.291 -0.686 -1.327 0.627 N3 A1DYR 14 A1DYR N4 N4 N 0 1 Y N N N N N -45.351 -29.159 7.250 -2.974 -1.600 0.411 N4 A1DYR 15 A1DYR N5 N5 N 0 1 Y N N N N N -47.694 -28.604 6.762 -4.223 0.441 -0.269 N5 A1DYR 16 A1DYR O1 O1 O 0 1 N N N N N N -44.563 -32.667 2.916 1.502 -1.179 -1.378 O1 A1DYR 17 A1DYR H13 H1 H 0 1 N N N N N N -48.090 -28.968 3.519 -1.894 2.709 -0.573 H13 A1DYR 18 A1DYR H3 H2 H 0 1 N N N N N N -43.911 -31.230 -0.903 4.709 1.278 -0.873 H3 A1DYR 19 A1DYR H2 H3 H 0 1 N N N N N N -42.348 -32.077 -0.652 5.470 -0.223 -0.303 H2 A1DYR 20 A1DYR H4 H4 H 0 1 N N N N N N -41.443 -30.359 0.563 4.058 -0.276 1.666 H4 A1DYR 21 A1DYR H5 H5 H 0 1 N N N N N N -42.519 -29.447 -0.549 4.746 1.364 1.543 H5 A1DYR 22 A1DYR H7 H6 H 0 1 N N N N N N -42.411 -28.886 2.014 2.351 1.579 2.005 H7 A1DYR 23 A1DYR H6 H7 H 0 1 N N N N N N -43.961 -28.833 1.107 2.637 2.074 0.317 H6 A1DYR 24 A1DYR H8 H8 H 0 1 N N N N N N -43.101 -30.478 3.382 1.575 -0.602 1.328 H8 A1DYR 25 A1DYR H10 H9 H 0 1 N N N N N N -43.372 -29.693 7.200 -1.680 -3.109 0.967 H10 A1DYR 26 A1DYR H12 H10 H 0 1 N N N N N N -49.545 -28.287 5.622 -4.482 2.528 -0.840 H12 A1DYR 27 A1DYR H1 H11 H 0 1 N N N N N N -43.930 -33.230 0.656 3.814 -0.929 -1.844 H1 A1DYR 28 A1DYR H9 H12 H 0 1 N N N N N N -45.188 -28.982 2.635 0.335 1.665 -0.030 H9 A1DYR 29 A1DYR H11 H13 H 0 1 N N N N N N -47.995 -28.383 7.690 -5.140 0.125 -0.298 H11 A1DYR 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DYR C2 C3 SING N N 1 A1DYR C2 N1 SING N N 2 A1DYR C3 C4 SING N N 3 A1DYR N1 C1 SING N N 4 A1DYR C4 C5 SING N N 5 A1DYR C1 C5 SING N N 6 A1DYR C1 O1 DOUB N N 7 A1DYR C5 N2 SING N N 8 A1DYR N2 C6 SING N N 9 A1DYR C6 C11 DOUB Y N 10 A1DYR C6 N3 SING Y N 11 A1DYR C10 C11 SING Y N 12 A1DYR C10 C9 DOUB Y N 13 A1DYR C11 C8 SING Y N 14 A1DYR N3 C7 DOUB Y N 15 A1DYR C9 N5 SING Y N 16 A1DYR C8 N5 SING Y N 17 A1DYR C8 N4 DOUB Y N 18 A1DYR C7 N4 SING Y N 19 A1DYR C10 H13 SING N N 20 A1DYR C2 H3 SING N N 21 A1DYR C2 H2 SING N N 22 A1DYR C3 H4 SING N N 23 A1DYR C3 H5 SING N N 24 A1DYR C4 H7 SING N N 25 A1DYR C4 H6 SING N N 26 A1DYR C5 H8 SING N N 27 A1DYR C7 H10 SING N N 28 A1DYR C9 H12 SING N N 29 A1DYR N1 H1 SING N N 30 A1DYR N2 H9 SING N N 31 A1DYR N5 H11 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DYR SMILES ACDLabs 14.52 "O=C1NCCCC1Nc1ncnc2[NH]ccc12" A1DYR InChI InChI 1.06 "InChI=1S/C11H13N5O/c17-11-8(2-1-4-13-11)16-10-7-3-5-12-9(7)14-6-15-10/h3,5-6,8H,1-2,4H2,(H,13,17)(H2,12,14,15,16)/t8-/m1/s1" A1DYR InChIKey InChI 1.06 BFUJZDJXLFTPHV-MRVPVSSYSA-N A1DYR SMILES_CANONICAL CACTVS 3.385 "O=C1NCCC[C@H]1Nc2ncnc3[nH]ccc23" A1DYR SMILES CACTVS 3.385 "O=C1NCCC[CH]1Nc2ncnc3[nH]ccc23" A1DYR SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N[C@@H]3CCCNC3=O" A1DYR SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC3CCCNC3=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DYR "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-2-one" A1DYR "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)piperidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DYR "Create component" 2026-08-25 RCSB A1DYR "Initial release" 2026-11-04 RCSB #