data_A1DYS # _chem_comp.id A1DYS _chem_comp.name "(3S)-1-methyl-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]pyrrolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H13 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 231.254 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15ES _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DYS C11 C1 C 0 1 N N N N N N -43.790 -30.708 1.788 -2.397 -0.585 -0.262 C11 A1DYS 1 A1DYS C1 C2 C 0 1 N N N N N N -41.424 -31.435 1.498 -4.390 0.090 -1.585 C1 A1DYS 2 A1DYS C10 C3 C 0 1 Y N N N N N -46.701 -28.998 4.672 1.959 0.502 0.001 C10 A1DYS 3 A1DYS C2 C4 C 0 1 N N N N N N -42.350 -29.165 0.826 -3.482 1.318 0.512 C2 A1DYS 4 A1DYS C3 C5 C 0 1 N N N N N N -43.567 -28.392 1.346 -2.588 0.839 1.678 C3 A1DYS 5 A1DYS C4 C6 C 0 1 N N S N N N -44.639 -29.480 1.494 -1.624 -0.132 0.957 C4 A1DYS 6 A1DYS C5 C7 C 0 1 Y N N N N N -45.566 -29.216 3.852 0.775 -0.147 0.384 C5 A1DYS 7 A1DYS C6 C8 C 0 1 Y N N N N N -44.298 -29.456 5.788 1.928 -2.145 0.408 C6 A1DYS 8 A1DYS C7 C9 C 0 1 Y N N N N N -46.468 -29.039 6.072 3.127 -0.266 -0.163 C7 A1DYS 9 A1DYS C8 C10 C 0 1 Y N N N N N -48.670 -28.623 5.707 3.638 1.871 -0.618 C8 A1DYS 10 A1DYS C9 C11 C 0 1 Y N N N N N -48.096 -28.725 4.465 2.332 1.882 -0.303 C9 A1DYS 11 A1DYS N1 N1 N 0 1 N N N N N N -42.531 -30.492 1.395 -3.432 0.243 -0.486 N1 A1DYS 12 A1DYS N2 N2 N 0 1 N N N N N N -45.701 -29.184 2.456 -0.398 0.564 0.558 N2 A1DYS 13 A1DYS N3 N3 N 0 1 Y N N N N N -44.371 -29.443 4.450 0.810 -1.462 0.574 N3 A1DYS 14 A1DYS N4 N4 N 0 1 Y N N N N N -45.272 -29.268 6.683 3.061 -1.579 0.051 N4 A1DYS 15 A1DYS N5 N5 N 0 1 Y N N N N N -47.689 -28.802 6.667 4.125 0.592 -0.534 N5 A1DYS 16 A1DYS O1 O1 O 0 1 N N N N N N -44.236 -31.737 2.297 -2.120 -1.551 -0.941 O1 A1DYS 17 A1DYS H1 H1 H 0 1 N N N N N N -41.780 -32.370 1.955 -4.032 0.637 -2.457 H1 A1DYS 18 A1DYS H3 H2 H 0 1 N N N N N N -41.027 -31.645 0.494 -4.491 -0.966 -1.834 H3 A1DYS 19 A1DYS H2 H3 H 0 1 N N N N N N -40.630 -31.001 2.123 -5.359 0.485 -1.280 H2 A1DYS 20 A1DYS H5 H4 H 0 1 N N N N N N -42.348 -29.204 -0.273 -4.505 1.465 0.857 H5 A1DYS 21 A1DYS H4 H5 H 0 1 N N N N N N -41.413 -28.709 1.179 -3.089 2.243 0.090 H4 A1DYS 22 A1DYS H6 H6 H 0 1 N N N N N N -43.349 -27.919 2.315 -2.043 1.674 2.120 H6 A1DYS 23 A1DYS H7 H7 H 0 1 N N N N N N -43.883 -27.623 0.626 -3.177 0.317 2.432 H7 A1DYS 24 A1DYS H8 H8 H 0 1 N N N N N N -45.100 -29.624 0.506 -1.390 -0.982 1.598 H8 A1DYS 25 A1DYS H10 H9 H 0 1 N N N N N N -43.317 -29.644 6.199 1.913 -3.213 0.574 H10 A1DYS 26 A1DYS H12 H10 H 0 1 N N N N N N -49.715 -28.434 5.903 4.218 2.740 -0.891 H12 A1DYS 27 A1DYS H13 H11 H 0 1 N N N N N N -48.597 -28.620 3.514 1.683 2.745 -0.279 H13 A1DYS 28 A1DYS H9 H12 H 0 1 N N N N N N -46.002 -28.255 2.240 -0.410 1.523 0.416 H9 A1DYS 29 A1DYS H11 H13 H 0 1 N N N N N N -47.844 -28.765 7.654 5.042 0.333 -0.715 H11 A1DYS 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DYS C2 C3 SING N N 1 A1DYS C2 N1 SING N N 2 A1DYS C3 C4 SING N N 3 A1DYS N1 C1 SING N N 4 A1DYS N1 C11 SING N N 5 A1DYS C4 C11 SING N N 6 A1DYS C4 N2 SING N N 7 A1DYS C11 O1 DOUB N N 8 A1DYS N2 C5 SING N N 9 A1DYS C5 N3 DOUB Y N 10 A1DYS C5 C10 SING Y N 11 A1DYS N3 C6 SING Y N 12 A1DYS C9 C10 SING Y N 13 A1DYS C9 C8 DOUB Y N 14 A1DYS C10 C7 DOUB Y N 15 A1DYS C8 N5 SING Y N 16 A1DYS C6 N4 DOUB Y N 17 A1DYS C7 N5 SING Y N 18 A1DYS C7 N4 SING Y N 19 A1DYS C1 H1 SING N N 20 A1DYS C1 H3 SING N N 21 A1DYS C1 H2 SING N N 22 A1DYS C2 H5 SING N N 23 A1DYS C2 H4 SING N N 24 A1DYS C3 H6 SING N N 25 A1DYS C3 H7 SING N N 26 A1DYS C4 H8 SING N N 27 A1DYS C6 H10 SING N N 28 A1DYS C8 H12 SING N N 29 A1DYS C9 H13 SING N N 30 A1DYS N2 H9 SING N N 31 A1DYS N5 H11 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DYS SMILES ACDLabs 14.52 "CN1CCC(Nc2ncnc3[NH]ccc23)C1=O" A1DYS InChI InChI 1.06 "InChI=1S/C11H13N5O/c1-16-5-3-8(11(16)17)15-10-7-2-4-12-9(7)13-6-14-10/h2,4,6,8H,3,5H2,1H3,(H2,12,13,14,15)/t8-/m0/s1" A1DYS InChIKey InChI 1.06 DOHKWCPZHNZHOU-QMMMGPOBSA-N A1DYS SMILES_CANONICAL CACTVS 3.385 "CN1CC[C@H](Nc2ncnc3[nH]ccc23)C1=O" A1DYS SMILES CACTVS 3.385 "CN1CC[CH](Nc2ncnc3[nH]ccc23)C1=O" A1DYS SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN1CC[C@@H](C1=O)Nc2c3cc[nH]c3ncn2" A1DYS SMILES "OpenEye OEToolkits" 3.1.0.0 "CN1CCC(C1=O)Nc2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DYS "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-methyl-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]pyrrolidin-2-one" A1DYS "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-methyl-3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)pyrrolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DYS "Create component" 2026-08-25 RCSB A1DYS "Initial release" 2026-11-04 RCSB #