data_A1DYT # _chem_comp.id A1DYT _chem_comp.name "(3R)-4,4-dimethyl-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]pyrrolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-25 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 245.280 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1DYT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15ET _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1DYT C11 C1 C 0 1 Y N N N N N -47.545 -29.191 4.340 2.387 1.755 0.680 C11 A1DYT 1 A1DYT C12 C2 C 0 1 Y N N N N N -46.270 -29.515 4.927 2.023 0.457 0.116 C12 A1DYT 2 A1DYT C1 C3 C 0 1 N N N N N N -41.526 -30.861 1.380 -3.751 0.245 -1.648 C1 A1DYT 3 A1DYT C10 C4 C 0 1 Y N N N N N -48.344 -28.717 5.355 3.728 1.788 0.745 C10 A1DYT 4 A1DYT C2 C5 C 0 1 N N N N N N -43.055 -30.708 1.354 -2.772 0.776 -0.599 C2 A1DYT 5 A1DYT C3 C6 C 0 1 N N N N N N -43.419 -29.255 0.947 -2.191 2.125 -1.029 C3 A1DYT 6 A1DYT C4 C7 C 0 1 N N N N N N -43.640 -31.701 0.325 -3.448 0.881 0.786 C4 A1DYT 7 A1DYT C5 C8 C 0 1 N N N N N N -44.101 -32.612 2.407 -2.151 -1.045 0.859 C5 A1DYT 8 A1DYT C6 C9 C 0 1 N N R N N N -43.709 -31.169 2.685 -1.647 -0.249 -0.324 C6 A1DYT 9 A1DYT C7 C10 C 0 1 Y N N N N N -45.025 -30.030 4.488 0.817 -0.185 -0.202 C7 A1DYT 10 A1DYT C8 C11 C 0 1 Y N N N N N -44.243 -29.869 6.665 2.029 -2.009 -0.928 C8 A1DYT 11 A1DYT C9 C12 C 0 1 Y N N N N N -46.351 -29.222 6.312 3.232 -0.221 -0.124 C9 A1DYT 12 A1DYT N1 N1 N 0 1 N N N N N N -44.045 -32.856 1.101 -3.162 -0.392 1.459 N1 A1DYT 13 A1DYT N2 N2 N 0 1 N N N N N N -44.835 -30.360 3.143 -0.398 0.439 0.015 N2 A1DYT 14 A1DYT N3 N3 N 0 1 Y N N N N N -44.021 -30.194 5.389 0.871 -1.410 -0.719 N3 A1DYT 15 A1DYT N4 N4 N 0 1 Y N N N N N -45.352 -29.380 7.221 3.183 -1.446 -0.645 N4 A1DYT 16 A1DYT N5 N5 N 0 1 Y N N N N N -47.624 -28.741 6.539 4.245 0.612 0.266 N5 A1DYT 17 A1DYT O1 O1 O 0 1 N N N N N N -44.425 -33.419 3.278 -1.708 -2.116 1.216 O1 A1DYT 18 A1DYT H15 H1 H 0 1 N N N N N N -47.821 -29.299 3.302 1.709 2.540 0.982 H15 A1DYT 19 A1DYT H2 H2 H 0 1 N N N N N N -41.099 -30.158 2.110 -4.201 -0.680 -1.289 H2 A1DYT 20 A1DYT H1 H3 H 0 1 N N N N N N -41.265 -31.890 1.667 -4.532 0.985 -1.822 H1 A1DYT 21 A1DYT H3 H4 H 0 1 N N N N N N -41.119 -30.645 0.381 -3.218 0.053 -2.579 H3 A1DYT 22 A1DYT H14 H5 H 0 1 N N N N N N -49.365 -28.381 5.247 4.312 2.616 1.117 H14 A1DYT 23 A1DYT H5 H6 H 0 1 N N N N N N -43.001 -28.552 1.682 -3.000 2.842 -1.163 H5 A1DYT 24 A1DYT H6 H7 H 0 1 N N N N N N -43.001 -29.037 -0.047 -1.507 2.487 -0.262 H6 A1DYT 25 A1DYT H4 H8 H 0 1 N N N N N N -44.513 -29.146 0.917 -1.652 2.005 -1.969 H4 A1DYT 26 A1DYT H7 H9 H 0 1 N N N N N N -42.878 -31.982 -0.416 -3.023 1.710 1.352 H7 A1DYT 27 A1DYT H8 H10 H 0 1 N N N N N N -44.506 -31.259 -0.189 -4.523 1.014 0.672 H8 A1DYT 28 A1DYT H10 H11 H 0 1 N N N N N N -42.929 -31.168 3.461 -1.503 -0.898 -1.187 H10 A1DYT 29 A1DYT H12 H12 H 0 1 N N N N N N -43.412 -30.023 7.338 2.028 -3.004 -1.349 H12 A1DYT 30 A1DYT H9 H13 H 0 1 N N N N N N -44.260 -33.745 0.696 -3.641 -0.720 2.236 H9 A1DYT 31 A1DYT H11 H14 H 0 1 N N N N N N -44.772 -29.492 2.650 -0.424 1.332 0.392 H11 A1DYT 32 A1DYT H13 H15 H 0 1 N N N N N N -47.976 -28.452 7.429 5.190 0.400 0.213 H13 A1DYT 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DYT C4 N1 SING N N 1 A1DYT C4 C2 SING N N 2 A1DYT C3 C2 SING N N 3 A1DYT N1 C5 SING N N 4 A1DYT C2 C1 SING N N 5 A1DYT C2 C6 SING N N 6 A1DYT C5 C6 SING N N 7 A1DYT C5 O1 DOUB N N 8 A1DYT C6 N2 SING N N 9 A1DYT N2 C7 SING N N 10 A1DYT C11 C12 SING Y N 11 A1DYT C11 C10 DOUB Y N 12 A1DYT C7 C12 DOUB Y N 13 A1DYT C7 N3 SING Y N 14 A1DYT C12 C9 SING Y N 15 A1DYT C10 N5 SING Y N 16 A1DYT N3 C8 DOUB Y N 17 A1DYT C9 N5 SING Y N 18 A1DYT C9 N4 DOUB Y N 19 A1DYT C8 N4 SING Y N 20 A1DYT C11 H15 SING N N 21 A1DYT C1 H2 SING N N 22 A1DYT C1 H1 SING N N 23 A1DYT C1 H3 SING N N 24 A1DYT C10 H14 SING N N 25 A1DYT C3 H5 SING N N 26 A1DYT C3 H6 SING N N 27 A1DYT C3 H4 SING N N 28 A1DYT C4 H7 SING N N 29 A1DYT C4 H8 SING N N 30 A1DYT C6 H10 SING N N 31 A1DYT C8 H12 SING N N 32 A1DYT N1 H9 SING N N 33 A1DYT N2 H11 SING N N 34 A1DYT N5 H13 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1DYT SMILES ACDLabs 14.52 "CC1(C)CNC(=O)C1Nc1ncnc2[NH]ccc12" A1DYT InChI InChI 1.06 "InChI=1S/C12H15N5O/c1-12(2)5-14-11(18)8(12)17-10-7-3-4-13-9(7)15-6-16-10/h3-4,6,8H,5H2,1-2H3,(H,14,18)(H2,13,15,16,17)/t8-/m0/s1" A1DYT InChIKey InChI 1.06 YJNSXAAZOBHCCJ-QMMMGPOBSA-N A1DYT SMILES_CANONICAL CACTVS 3.385 "CC1(C)CNC(=O)[C@@H]1Nc2ncnc3[nH]ccc23" A1DYT SMILES CACTVS 3.385 "CC1(C)CNC(=O)[CH]1Nc2ncnc3[nH]ccc23" A1DYT SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1(CNC(=O)[C@@H]1Nc2c3cc[nH]c3ncn2)C" A1DYT SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1(CNC(=O)C1Nc2c3cc[nH]c3ncn2)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1DYT "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-4,4-dimethyl-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]pyrrolidin-2-one" A1DYT "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-4,4-dimethyl-3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)pyrrolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1DYT "Create component" 2026-08-25 RCSB A1DYT "Initial release" 2026-11-04 RCSB #