data_A1E1C # _chem_comp.id A1E1C _chem_comp.name "5-chloranyl-~{N}4-(2-dimethylphosphorylphenyl)-~{N}2-[2-methoxy-4-(4-methylpiperazin-1-yl)-5-nitro-phenyl]pyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H29 Cl N7 O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-28 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 545.958 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1E1C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9XU9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1E1C C17 C1 C 0 1 Y N N N N N 53.643 -1.248 -23.055 2.379 -2.138 -0.164 C17 A1E1C 1 A1E1C C21 C2 C 0 1 Y N N N N N 50.472 0.881 -22.203 4.625 0.663 0.691 C21 A1E1C 2 A1E1C C22 C3 C 0 1 Y N N N N N 49.836 0.284 -21.055 3.818 1.448 1.505 C22 A1E1C 3 A1E1C C24 C4 C 0 1 Y N N N N N 48.315 2.188 -20.758 5.492 3.160 1.510 C24 A1E1C 4 A1E1C C26 C5 C 0 1 Y N N N N N 49.999 2.162 -22.625 5.868 1.135 0.289 C26 A1E1C 5 A1E1C C28 C6 C 0 1 N N N N N N 50.358 4.432 -24.354 8.335 1.110 -1.364 C28 A1E1C 6 A1E1C C01 C7 C 0 1 N N N N N N 47.679 1.621 -13.223 -9.887 0.349 -0.596 C01 A1E1C 7 A1E1C C03 C8 C 0 1 N N N N N N 47.923 -0.090 -14.547 -7.947 0.578 0.835 C03 A1E1C 8 A1E1C C04 C9 C 0 1 N N N N N N 48.172 0.960 -15.734 -6.458 0.933 0.849 C04 A1E1C 9 A1E1C C06 C10 C 0 1 Y N N N N N 50.620 0.573 -16.527 -4.346 0.230 0.052 C06 A1E1C 10 A1E1C C07 C11 C 0 1 Y N N N N N 51.272 1.107 -17.655 -3.477 -0.754 0.503 C07 A1E1C 11 A1E1C C11 C12 C 0 1 Y N N N N N 52.234 0.373 -18.384 -2.116 -0.512 0.543 C11 A1E1C 12 A1E1C C12 C13 C 0 1 Y N N N N N 52.643 -0.959 -18.049 -1.617 0.714 0.133 C12 A1E1C 13 A1E1C C14 C14 C 0 1 Y N N N N N 53.631 -1.558 -20.336 0.658 -0.092 0.061 C14 A1E1C 14 A1E1C C16 C15 C 0 1 Y N N N N N 54.621 -2.003 -22.394 1.021 -2.337 -0.322 C16 A1E1C 15 A1E1C C19 C16 C 0 1 Y N N N N N 52.625 -0.624 -22.328 2.836 -0.847 0.116 C19 A1E1C 16 A1E1C C23 C17 C 0 1 Y N N N N N 48.789 0.900 -20.344 4.253 2.693 1.912 C23 A1E1C 17 A1E1C C25 C18 C 0 1 Y N N N N N 48.934 2.787 -21.886 6.298 2.382 0.700 C25 A1E1C 18 A1E1C C29 C19 C 0 1 N N N N N N 52.706 2.998 -23.694 7.547 -1.312 0.177 C29 A1E1C 19 A1E1C C32 C20 C 0 1 Y N N N N N 51.979 -1.525 -16.902 -2.487 1.704 -0.320 C32 A1E1C 20 A1E1C C34 C21 C 0 1 N N N N N N 53.261 -2.871 -15.378 -2.949 3.875 -1.174 C34 A1E1C 21 A1E1C C35 C22 C 0 1 Y N N N N N 51.016 -0.754 -16.179 -3.849 1.460 -0.360 C35 A1E1C 22 A1E1C C36 C23 C 0 1 N N N N N N 50.051 1.876 -14.410 -6.217 0.013 -1.377 C36 A1E1C 23 A1E1C C37 C24 C 0 1 N N N N N N 49.802 0.801 -13.309 -7.706 -0.342 -1.391 C37 A1E1C 24 A1E1C N02 N1 N 0 1 N N N N N N 48.386 0.383 -13.254 -8.442 0.611 -0.548 N02 A1E1C 25 A1E1C N05 N2 N 0 1 N N N N N N 49.656 1.378 -15.781 -5.722 -0.020 0.006 N05 A1E1C 26 A1E1C N08 N3 N 1 1 N N N N N N 50.885 2.558 -17.994 -4.008 -2.065 0.941 N08 A1E1C 27 A1E1C N13 N4 N 0 1 N N N N N N 53.613 -1.684 -18.883 -0.236 0.960 0.175 N13 A1E1C 28 A1E1C N15 N5 N 0 1 Y N N N N N 54.632 -2.169 -21.054 0.197 -1.305 -0.205 N15 A1E1C 29 A1E1C N20 N6 N 0 1 N N N N N N 51.571 0.182 -22.911 4.190 -0.601 0.282 N20 A1E1C 30 A1E1C N31 N7 N 0 1 Y N N N N N 52.648 -0.794 -20.988 1.953 0.140 0.220 N31 A1E1C 31 A1E1C O09 O1 O -1 1 N N N N N N 50.497 2.937 -19.030 -5.206 -2.279 0.906 O09 A1E1C 32 A1E1C O10 O2 O 0 1 N N N N N N 51.061 3.379 -17.062 -3.246 -2.929 1.337 O10 A1E1C 33 A1E1C O30 O3 O 0 1 N N N N N N 50.465 2.171 -25.311 6.143 -0.368 -1.933 O30 A1E1C 34 A1E1C O33 O4 O 0 1 N N N N N N 52.296 -2.831 -16.451 -1.999 2.908 -0.722 O33 A1E1C 35 A1E1C P27 P1 P 0 1 N N N N N N 50.853 2.857 -24.024 6.927 0.115 -0.774 P27 A1E1C 36 A1E1C CL18 CL1 CL 0 0 N N N N N N 53.690 -1.079 -24.737 3.492 -3.463 -0.303 CL18 A1E1C 37 A1E1C H221 H1 H 0 0 N N N N N N 50.180 -0.685 -20.724 2.851 1.084 1.819 H221 A1E1C 38 A1E1C H241 H2 H 0 0 N N N N N N 47.515 2.685 -20.230 5.830 4.135 1.829 H241 A1E1C 39 A1E1C H282 H3 H 0 0 N N N N N N 50.578 5.075 -23.489 7.964 1.963 -1.932 H282 A1E1C 40 A1E1C H281 H4 H 0 0 N N N N N N 50.896 4.808 -25.236 8.912 1.465 -0.510 H281 A1E1C 41 A1E1C H283 H5 H 0 0 N N N N N N 49.276 4.442 -24.553 8.971 0.497 -2.003 H283 A1E1C 42 A1E1C H011 H6 H 0 0 N N N N N N 47.906 2.150 -12.286 -10.413 1.109 -0.018 H011 A1E1C 43 A1E1C H012 H7 H 0 0 N N N N N N 47.988 2.241 -14.078 -10.227 0.379 -1.631 H012 A1E1C 44 A1E1C H013 H8 H 0 0 N N N N N N 46.598 1.427 -13.282 -10.092 -0.635 -0.175 H013 A1E1C 45 A1E1C H032 H9 H 0 0 N N N N N N 46.844 -0.291 -14.479 -8.086 -0.421 1.248 H032 A1E1C 46 A1E1C H031 H10 H 0 0 N N N N N N 48.455 -1.022 -14.788 -8.499 1.300 1.436 H031 A1E1C 47 A1E1C H042 H11 H 0 0 N N N N N N 47.550 1.851 -15.566 -6.321 1.943 0.461 H042 A1E1C 48 A1E1C H041 H12 H 0 0 N N N N N N 47.896 0.496 -16.692 -6.081 0.882 1.871 H041 A1E1C 49 A1E1C H111 H13 H 0 0 N N N N N N 52.688 0.843 -19.244 -1.442 -1.279 0.895 H111 A1E1C 50 A1E1C H161 H14 H 0 0 N N N N N N 55.398 -2.471 -22.980 0.635 -3.322 -0.540 H161 A1E1C 51 A1E1C H231 H15 H 0 0 N N N N N N 48.346 0.406 -19.492 3.626 3.304 2.545 H231 A1E1C 52 A1E1C H251 H16 H 0 0 N N N N N N 48.589 3.759 -22.205 7.264 2.750 0.387 H251 A1E1C 53 A1E1C H292 H17 H 0 0 N N N N N N 52.870 3.512 -22.735 8.124 -0.957 1.031 H292 A1E1C 54 A1E1C H291 H18 H 0 0 N N N N N N 53.148 1.992 -23.651 6.705 -1.907 0.530 H291 A1E1C 55 A1E1C H293 H19 H 0 0 N N N N N N 53.180 3.573 -24.503 8.183 -1.925 -0.462 H293 A1E1C 56 A1E1C H343 H20 H 0 0 N N N N N N 53.448 -3.916 -15.091 -3.491 3.477 -2.032 H343 A1E1C 57 A1E1C H342 H21 H 0 0 N N N N N N 54.201 -2.409 -15.713 -3.651 4.097 -0.371 H342 A1E1C 58 A1E1C H341 H22 H 0 0 N N N N N N 52.869 -2.318 -14.512 -2.428 4.787 -1.465 H341 A1E1C 59 A1E1C H351 H23 H 0 0 N N N N N N 50.557 -1.206 -15.312 -4.525 2.224 -0.715 H351 A1E1C 60 A1E1C H361 H24 H 0 0 N N N N N N 51.120 2.135 -14.420 -5.666 -0.709 -1.978 H361 A1E1C 61 A1E1C H362 H25 H 0 0 N N N N N N 49.459 2.772 -14.173 -6.078 1.012 -1.790 H362 A1E1C 62 A1E1C H372 H26 H 0 0 N N N N N N 50.424 -0.080 -13.526 -8.083 -0.290 -2.413 H372 A1E1C 63 A1E1C H371 H27 H 0 0 N N N N N N 50.087 1.220 -12.333 -7.843 -1.351 -1.004 H371 A1E1C 64 A1E1C H131 H29 H 0 0 N N N N N N 54.281 -2.282 -18.440 0.093 1.866 0.285 H131 A1E1C 65 A1E1C H201 H30 H 0 0 N N N N N N 51.587 0.278 -23.906 4.836 -1.305 0.114 H201 A1E1C 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1E1C O30 P27 DOUB N N 1 A1E1C CL18 C17 SING N N 2 A1E1C C28 P27 SING N N 3 A1E1C P27 C29 SING N N 4 A1E1C P27 C26 SING N N 5 A1E1C C17 C16 DOUB Y N 6 A1E1C C17 C19 SING Y N 7 A1E1C N20 C19 SING N N 8 A1E1C N20 C21 SING N N 9 A1E1C C26 C21 DOUB Y N 10 A1E1C C26 C25 SING Y N 11 A1E1C C16 N15 SING Y N 12 A1E1C C19 N31 DOUB Y N 13 A1E1C C21 C22 SING Y N 14 A1E1C C25 C24 DOUB Y N 15 A1E1C C22 C23 DOUB Y N 16 A1E1C N15 C14 DOUB Y N 17 A1E1C N31 C14 SING Y N 18 A1E1C C24 C23 SING Y N 19 A1E1C C14 N13 SING N N 20 A1E1C O09 N08 SING N N 21 A1E1C N13 C12 SING N N 22 A1E1C C11 C12 DOUB Y N 23 A1E1C C11 C07 SING Y N 24 A1E1C C12 C32 SING Y N 25 A1E1C N08 C07 SING N N 26 A1E1C N08 O10 DOUB N N 27 A1E1C C07 C06 DOUB Y N 28 A1E1C C32 O33 SING N N 29 A1E1C C32 C35 DOUB Y N 30 A1E1C C06 C35 SING Y N 31 A1E1C C06 N05 SING N N 32 A1E1C O33 C34 SING N N 33 A1E1C N05 C04 SING N N 34 A1E1C N05 C36 SING N N 35 A1E1C C04 C03 SING N N 36 A1E1C C03 N02 SING N N 37 A1E1C C36 C37 SING N N 38 A1E1C C37 N02 SING N N 39 A1E1C N02 C01 SING N N 40 A1E1C C22 H221 SING N N 41 A1E1C C24 H241 SING N N 42 A1E1C C28 H282 SING N N 43 A1E1C C28 H281 SING N N 44 A1E1C C28 H283 SING N N 45 A1E1C C01 H011 SING N N 46 A1E1C C01 H012 SING N N 47 A1E1C C01 H013 SING N N 48 A1E1C C03 H032 SING N N 49 A1E1C C03 H031 SING N N 50 A1E1C C04 H042 SING N N 51 A1E1C C04 H041 SING N N 52 A1E1C C11 H111 SING N N 53 A1E1C C16 H161 SING N N 54 A1E1C C23 H231 SING N N 55 A1E1C C25 H251 SING N N 56 A1E1C C29 H292 SING N N 57 A1E1C C29 H291 SING N N 58 A1E1C C29 H293 SING N N 59 A1E1C C34 H343 SING N N 60 A1E1C C34 H342 SING N N 61 A1E1C C34 H341 SING N N 62 A1E1C C35 H351 SING N N 63 A1E1C C36 H361 SING N N 64 A1E1C C36 H362 SING N N 65 A1E1C C37 H372 SING N N 66 A1E1C C37 H371 SING N N 67 A1E1C N13 H131 SING N N 68 A1E1C N20 H201 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1E1C InChI InChI 1.06 "InChI=1S/C24H29ClN7O4P/c1-30-9-11-31(12-10-30)19-14-21(36-2)18(13-20(19)32(33)34)28-24-26-15-16(25)23(29-24)27-17-7-5-6-8-22(17)37(3,4)35/h5-8,13-15H,9-12H2,1-4H3,(H2,26,27,28,29)" A1E1C InChIKey InChI 1.06 JPGNRNMUXAFODV-UHFFFAOYSA-N A1E1C SMILES_CANONICAL CACTVS 3.385 "COc1cc(N2CCN(C)CC2)c(cc1Nc3ncc(Cl)c(Nc4ccccc4[P](C)(C)=O)n3)[N+]([O-])=O" A1E1C SMILES CACTVS 3.385 "COc1cc(N2CCN(C)CC2)c(cc1Nc3ncc(Cl)c(Nc4ccccc4[P](C)(C)=O)n3)[N+]([O-])=O" A1E1C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2cc(c(cc2[N+](=O)[O-])Nc3ncc(c(n3)Nc4ccccc4P(=O)(C)C)Cl)OC" A1E1C SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2cc(c(cc2[N+](=O)[O-])Nc3ncc(c(n3)Nc4ccccc4P(=O)(C)C)Cl)OC" # _pdbx_chem_comp_identifier.comp_id A1E1C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-chloranyl-~{N}4-(2-dimethylphosphorylphenyl)-~{N}2-[2-methoxy-4-(4-methylpiperazin-1-yl)-5-nitro-phenyl]pyrimidine-2,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1E1C "Create component" 2025-11-28 PDBC A1E1C "Initial release" 2025-12-24 RCSB #