data_A1E1Q # _chem_comp.id A1E1Q _chem_comp.name "(2~{S})-2-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H48 N O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Lysophosphatidylserine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-12-07 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 525.613 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1E1Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9XXT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1E1Q C13 C1 C 0 1 N N N N N N 121.649 123.822 145.651 9.845 0.538 -0.025 C13 A1E1Q 1 A1E1Q C15 C2 C 0 1 N N N N N N 121.002 123.427 144.325 11.101 -0.332 0.055 C15 A1E1Q 2 A1E1Q C17 C3 C 0 1 N N N N N N 120.716 124.681 143.503 12.343 0.560 0.008 C17 A1E1Q 3 A1E1Q C20 C4 C 0 1 N N N N N N 121.576 123.605 141.425 14.841 0.581 0.041 C20 A1E1Q 4 A1E1Q C21 C5 C 0 1 N N N N N N 120.079 122.402 149.643 3.606 -0.397 -0.043 C21 A1E1Q 5 A1E1Q C22 C6 C 0 1 N N N N N N 122.660 123.671 140.352 16.097 -0.289 0.120 C22 A1E1Q 6 A1E1Q C24 C7 C 0 1 N N N N N N 122.333 124.777 139.349 17.339 0.603 0.074 C24 A1E1Q 7 A1E1Q C26 C8 C 0 1 N N N N N N 120.993 124.490 138.673 18.595 -0.267 0.153 C26 A1E1Q 8 A1E1Q C28 C9 C 0 1 N N N N N N 120.740 125.512 137.566 19.837 0.625 0.106 C28 A1E1Q 9 A1E1Q C12 C10 C 0 1 N N N N N N 120.851 124.957 146.290 8.602 -0.354 0.022 C12 A1E1Q 10 A1E1Q C14 C11 C 0 1 N N N N N N 120.273 124.493 147.624 7.346 0.516 -0.058 C14 A1E1Q 11 A1E1Q C16 C12 C 0 1 N N N N N N 121.410 124.258 148.614 6.104 -0.376 -0.011 C16 A1E1Q 12 A1E1Q C18 C13 C 0 1 N N N N N N 120.847 123.693 149.915 4.848 0.495 -0.090 C18 A1E1Q 13 A1E1Q C19 C14 C 0 1 N N N N N N 121.724 124.799 142.363 13.599 -0.310 0.088 C19 A1E1Q 14 A1E1Q C23 C15 C 0 1 N N N N N N 119.981 121.613 150.947 2.350 0.473 -0.123 C23 A1E1Q 15 A1E1Q C25 C16 C 0 1 N N N N N N 118.623 120.924 151.039 1.108 -0.419 -0.076 C25 A1E1Q 16 A1E1Q C27 C17 C 0 1 N N N N N N 117.739 121.659 152.044 -0.148 0.451 -0.156 C27 A1E1Q 17 A1E1Q C29 C18 C 0 1 N N N N N N 116.352 121.021 152.055 -1.372 -0.427 -0.110 C29 A1E1Q 18 A1E1Q C30 C19 C 0 1 N N N N N N 114.204 120.680 151.186 -3.728 -0.785 -0.116 C30 A1E1Q 19 A1E1Q C31 C20 C 0 1 N N R N N N 113.117 121.684 150.813 -5.028 0.019 -0.192 C31 A1E1Q 20 A1E1Q C32 C21 C 0 1 N N N N N N 111.753 121.017 150.954 -6.220 -0.923 -0.015 C32 A1E1Q 21 A1E1Q C33 C22 C 0 1 N N N N N N 109.142 117.701 150.974 -11.413 0.020 0.098 C33 A1E1Q 22 A1E1Q C34 C23 C 0 1 N N S N N N 108.209 117.620 149.769 -12.205 1.322 -0.036 C34 A1E1Q 23 A1E1Q C35 C24 C 0 1 N N N N N N 108.797 116.660 148.740 -13.674 1.007 -0.149 C35 A1E1Q 24 A1E1Q N11 N1 N 0 1 N N N N N N 106.913 117.131 150.196 -11.973 2.161 1.148 N11 A1E1Q 25 A1E1Q O02 O1 O 0 1 N N N N N N 115.461 121.266 151.008 -2.595 0.122 -0.166 O02 A1E1Q 26 A1E1Q O03 O2 O 0 1 N N N N N N 116.032 120.317 152.952 -1.252 -1.626 -0.022 O03 A1E1Q 27 A1E1Q O04 O3 O 0 1 N N N N N N 113.296 122.108 149.492 -5.116 0.664 -1.464 O04 A1E1Q 28 A1E1Q O05 O4 O 0 1 N N N N N N 111.758 120.228 152.106 -7.428 -0.160 0.032 O05 A1E1Q 29 A1E1Q O06 O5 O 0 1 N N N N N N 109.555 119.023 151.147 -10.014 0.310 0.088 O06 A1E1Q 30 A1E1Q O07 O6 O 0 1 N N N N N N 109.532 120.292 153.391 -8.977 -1.526 1.658 O07 A1E1Q 31 A1E1Q O08 O7 O 0 1 N N N N N N 110.755 118.154 153.251 -9.089 -1.846 -0.843 O08 A1E1Q 32 A1E1Q O09 O8 O 0 1 N N N N N N 109.963 116.840 148.306 -14.390 1.110 0.820 O09 A1E1Q 33 A1E1Q O10 O9 O 0 1 N N N N N N 108.114 115.689 148.325 -14.188 0.613 -1.324 O10 A1E1Q 34 A1E1Q P01 P1 P 0 1 N N N N N N 110.387 119.415 152.512 -8.881 -0.828 0.210 P01 A1E1Q 35 A1E1Q H1 H1 H 0 1 N N N N N N 121.658 122.954 146.327 9.828 1.229 0.818 H1 A1E1Q 36 A1E1Q H2 H2 H 0 1 N N N N N N 122.681 124.156 145.470 9.852 1.102 -0.957 H2 A1E1Q 37 A1E1Q H3 H3 H 0 1 N N N N N N 120.060 122.895 144.521 11.093 -0.896 0.988 H3 A1E1Q 38 A1E1Q H4 H4 H 0 1 N N N N N N 121.684 122.770 143.766 11.118 -1.023 -0.788 H4 A1E1Q 39 A1E1Q H5 H5 H 0 1 N N N N N N 120.793 125.567 144.151 12.350 1.124 -0.925 H5 A1E1Q 40 A1E1Q H6 H6 H 0 1 N N N N N N 119.700 124.619 143.086 12.326 1.251 0.851 H6 A1E1Q 41 A1E1Q H7 H7 H 0 1 N N N N N N 120.585 123.632 140.949 14.824 1.273 0.883 H7 A1E1Q 42 A1E1Q H8 H8 H 0 1 N N N N N N 121.682 122.672 141.998 14.848 1.145 -0.892 H8 A1E1Q 43 A1E1Q H9 H9 H 0 1 N N N N N N 119.070 122.641 149.277 3.623 -1.089 -0.886 H9 A1E1Q 44 A1E1Q H10 H10 H 0 1 N N N N N N 120.611 121.806 148.887 3.599 -0.961 0.889 H10 A1E1Q 45 A1E1Q H11 H11 H 0 1 N N N N N N 122.712 122.706 139.827 16.090 -0.853 1.053 H11 A1E1Q 46 A1E1Q H12 H12 H 0 1 N N N N N N 123.630 123.883 140.826 16.114 -0.980 -0.722 H12 A1E1Q 47 A1E1Q H13 H13 H 0 1 N N N N N N 123.124 124.822 138.586 17.347 1.167 -0.859 H13 A1E1Q 48 A1E1Q H14 H14 H 0 1 N N N N N N 122.276 125.741 139.876 17.322 1.294 0.916 H14 A1E1Q 49 A1E1Q H15 H15 H 0 1 N N N N N N 120.187 124.553 139.419 18.588 -0.831 1.086 H15 A1E1Q 50 A1E1Q H16 H16 H 0 1 N N N N N N 121.012 123.479 138.239 18.612 -0.958 -0.689 H16 A1E1Q 51 A1E1Q H17 H17 H 0 1 N N N N N N 119.774 125.300 137.084 20.732 0.005 0.163 H17 A1E1Q 52 A1E1Q H18 H18 H 0 1 N N N N N N 120.719 126.523 137.998 19.845 1.189 -0.826 H18 A1E1Q 53 A1E1Q H19 H19 H 0 1 N N N N N N 121.545 125.449 136.818 19.820 1.316 0.949 H19 A1E1Q 54 A1E1Q H20 H20 H 0 1 N N N N N N 121.513 125.819 146.459 8.620 -1.045 -0.820 H20 A1E1Q 55 A1E1Q H21 H21 H 0 1 N N N N N N 120.031 125.250 145.618 8.595 -0.918 0.955 H21 A1E1Q 56 A1E1Q H22 H22 H 0 1 N N N N N N 119.596 125.265 148.019 7.329 1.208 0.785 H22 A1E1Q 57 A1E1Q H23 H23 H 0 1 N N N N N N 119.715 123.556 147.477 7.354 1.080 -0.990 H23 A1E1Q 58 A1E1Q H24 H24 H 0 1 N N N N N N 122.127 123.543 148.185 6.121 -1.067 -0.853 H24 A1E1Q 59 A1E1Q H25 H25 H 0 1 N N N N N N 121.920 125.211 148.819 6.097 -0.940 0.922 H25 A1E1Q 60 A1E1Q H26 H26 H 0 1 N N N N N N 121.675 123.484 150.608 4.856 1.059 -1.023 H26 A1E1Q 61 A1E1Q H27 H27 H 0 1 N N N N N N 120.168 124.431 150.367 4.831 1.186 0.752 H27 A1E1Q 62 A1E1Q H28 H28 H 0 1 N N N N N N 122.743 124.816 142.776 13.591 -0.874 1.020 H28 A1E1Q 63 A1E1Q H29 H29 H 0 1 N N N N N N 121.539 125.729 141.805 13.616 -1.002 -0.755 H29 A1E1Q 64 A1E1Q H30 H30 H 0 1 N N N N N N 120.777 120.854 150.974 2.333 1.164 0.720 H30 A1E1Q 65 A1E1Q H31 H31 H 0 1 N N N N N N 120.099 122.300 151.798 2.358 1.037 -1.056 H31 A1E1Q 66 A1E1Q H32 H32 H 0 1 N N N N N N 118.140 120.935 150.051 1.125 -1.110 -0.919 H32 A1E1Q 67 A1E1Q H33 H33 H 0 1 N N N N N N 118.763 119.883 151.367 1.101 -0.983 0.857 H33 A1E1Q 68 A1E1Q H34 H34 H 0 1 N N N N N N 118.185 121.587 153.047 -0.165 1.143 0.687 H34 A1E1Q 69 A1E1Q H35 H35 H 0 1 N N N N N N 117.655 122.717 151.755 -0.141 1.015 -1.089 H35 A1E1Q 70 A1E1Q H36 H36 H 0 1 N N N N N N 114.084 120.383 152.238 -3.702 -1.347 0.817 H36 A1E1Q 71 A1E1Q H37 H37 H 0 1 N N N N N N 114.119 119.792 150.543 -3.678 -1.475 -0.959 H37 A1E1Q 72 A1E1Q H38 H38 H 0 1 N N N N N N 113.169 122.538 151.505 -5.037 0.770 0.598 H38 A1E1Q 73 A1E1Q H39 H39 H 0 1 N N N N N N 110.971 121.787 151.036 -6.262 -1.618 -0.853 H39 A1E1Q 74 A1E1Q H40 H40 H 0 1 N N N N N N 111.556 120.387 150.074 -6.108 -1.481 0.915 H40 A1E1Q 75 A1E1Q H41 H41 H 0 1 N N N N N N 108.610 117.361 151.875 -11.675 -0.470 1.036 H41 A1E1Q 76 A1E1Q H42 H42 H 0 1 N N N N N N 110.020 117.061 150.803 -11.654 -0.639 -0.736 H42 A1E1Q 77 A1E1Q H43 H43 H 0 1 N N N N N N 108.111 118.619 149.319 -11.878 1.856 -0.929 H43 A1E1Q 78 A1E1Q H44 H44 H 0 1 N N N N N N 106.525 117.759 150.871 -12.268 1.688 1.989 H44 A1E1Q 79 A1E1Q H45 H45 H 0 1 N N N N N N 106.302 117.072 149.406 -11.005 2.439 1.210 H45 A1E1Q 80 A1E1Q H47 H47 H 0 1 N N N N N N 114.146 122.523 149.405 -5.112 0.056 -2.215 H47 A1E1Q 81 A1E1Q H48 H48 H 0 1 N N N N N N 109.401 119.868 154.231 -8.850 -0.916 2.398 H48 A1E1Q 82 A1E1Q H49 H49 H 0 1 N N N N N N 108.620 115.193 147.692 -15.136 0.422 -1.347 H49 A1E1Q 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1E1Q C28 C26 SING N N 1 A1E1Q C26 C24 SING N N 2 A1E1Q C24 C22 SING N N 3 A1E1Q C22 C20 SING N N 4 A1E1Q C20 C19 SING N N 5 A1E1Q C19 C17 SING N N 6 A1E1Q C17 C15 SING N N 7 A1E1Q C15 C13 SING N N 8 A1E1Q C13 C12 SING N N 9 A1E1Q C12 C14 SING N N 10 A1E1Q C14 C16 SING N N 11 A1E1Q O09 C35 DOUB N N 12 A1E1Q O10 C35 SING N N 13 A1E1Q C16 C18 SING N N 14 A1E1Q C35 C34 SING N N 15 A1E1Q O04 C31 SING N N 16 A1E1Q C21 C18 SING N N 17 A1E1Q C21 C23 SING N N 18 A1E1Q C34 N11 SING N N 19 A1E1Q C34 C33 SING N N 20 A1E1Q C31 C32 SING N N 21 A1E1Q C31 C30 SING N N 22 A1E1Q C23 C25 SING N N 23 A1E1Q C32 O05 SING N N 24 A1E1Q C33 O06 SING N N 25 A1E1Q O02 C30 SING N N 26 A1E1Q O02 C29 SING N N 27 A1E1Q C25 C27 SING N N 28 A1E1Q O06 P01 SING N N 29 A1E1Q C27 C29 SING N N 30 A1E1Q C29 O03 DOUB N N 31 A1E1Q O05 P01 SING N N 32 A1E1Q P01 O08 DOUB N N 33 A1E1Q P01 O07 SING N N 34 A1E1Q C13 H1 SING N N 35 A1E1Q C13 H2 SING N N 36 A1E1Q C15 H3 SING N N 37 A1E1Q C15 H4 SING N N 38 A1E1Q C17 H5 SING N N 39 A1E1Q C17 H6 SING N N 40 A1E1Q C20 H7 SING N N 41 A1E1Q C20 H8 SING N N 42 A1E1Q C21 H9 SING N N 43 A1E1Q C21 H10 SING N N 44 A1E1Q C22 H11 SING N N 45 A1E1Q C22 H12 SING N N 46 A1E1Q C24 H13 SING N N 47 A1E1Q C24 H14 SING N N 48 A1E1Q C26 H15 SING N N 49 A1E1Q C26 H16 SING N N 50 A1E1Q C28 H17 SING N N 51 A1E1Q C28 H18 SING N N 52 A1E1Q C28 H19 SING N N 53 A1E1Q C12 H20 SING N N 54 A1E1Q C12 H21 SING N N 55 A1E1Q C14 H22 SING N N 56 A1E1Q C14 H23 SING N N 57 A1E1Q C16 H24 SING N N 58 A1E1Q C16 H25 SING N N 59 A1E1Q C18 H26 SING N N 60 A1E1Q C18 H27 SING N N 61 A1E1Q C19 H28 SING N N 62 A1E1Q C19 H29 SING N N 63 A1E1Q C23 H30 SING N N 64 A1E1Q C23 H31 SING N N 65 A1E1Q C25 H32 SING N N 66 A1E1Q C25 H33 SING N N 67 A1E1Q C27 H34 SING N N 68 A1E1Q C27 H35 SING N N 69 A1E1Q C30 H36 SING N N 70 A1E1Q C30 H37 SING N N 71 A1E1Q C31 H38 SING N N 72 A1E1Q C32 H39 SING N N 73 A1E1Q C32 H40 SING N N 74 A1E1Q C33 H41 SING N N 75 A1E1Q C33 H42 SING N N 76 A1E1Q C34 H43 SING N N 77 A1E1Q N11 H44 SING N N 78 A1E1Q N11 H45 SING N N 79 A1E1Q O04 H47 SING N N 80 A1E1Q O07 H48 SING N N 81 A1E1Q O10 H49 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1E1Q InChI InChI 1.06 "InChI=1S/C24H48NO9P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-23(27)32-18-21(26)19-33-35(30,31)34-20-22(25)24(28)29/h21-22,26H,2-20,25H2,1H3,(H,28,29)(H,30,31)/t21-,22+/m1/s1" A1E1Q InChIKey InChI 1.06 ZPDQFUYPBVXUKS-YADHBBJMSA-N A1E1Q SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCCCC(=O)OC[C@@H](O)CO[P](O)(=O)OC[C@H](N)C(O)=O" A1E1Q SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCCCC(=O)OC[CH](O)CO[P](O)(=O)OC[CH](N)C(O)=O" A1E1Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](C(=O)O)N)O" A1E1Q SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)O" # _pdbx_chem_comp_identifier.comp_id A1E1Q _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1E1Q _pdbx_chem_comp_synonyms.name Lysophosphatidylserine _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1E1Q "Create component" 2025-12-07 PDBC A1E1Q "Initial release" 2026-04-15 RCSB #