data_A1E2M # _chem_comp.id A1E2M _chem_comp.name "(2~{S})-2-ethyl-4-[5-[3-[[4-fluoranyl-6-methoxy-2-(4-oxidanyl-4-oxidanylidene-butanoyl)-1,3-dihydroisoindol-5-yl]oxy]propoxy]-6-methoxy-1-benzoselenophen-2-yl]-4-oxidanylidene-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H34 F N O10 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-12-19 _chem_comp.pdbx_modified_date 2026-10-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 678.561 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1E2M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9X1J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1E2M OAT O1 O 0 1 N N N N N N -3.171 -20.463 -2.971 12.934 -3.967 -0.582 OAT A1E2M 1 A1E2M CAS C1 C 0 1 N N N N N N -3.225 -19.169 -2.787 11.932 -3.217 -0.098 CAS A1E2M 2 A1E2M OAU O2 O 0 1 N N N N N N -2.431 -18.325 -3.312 11.853 -3.007 1.089 OAU A1E2M 3 A1E2M CAR C2 C 0 1 N N N N N N -4.170 -18.611 -1.766 10.905 -2.636 -1.036 CAR A1E2M 4 A1E2M CAQ C3 C 0 1 N N N N N N -4.122 -19.434 -0.463 9.882 -1.829 -0.235 CAQ A1E2M 5 A1E2M CAO C4 C 0 1 N N N N N N -2.791 -19.379 0.263 8.855 -1.248 -1.173 CAO A1E2M 6 A1E2M OAP O3 O 0 1 N N N N N N -2.169 -18.290 0.406 8.934 -1.458 -2.365 OAP A1E2M 7 A1E2M NAM N1 N 0 1 N N N N N N -2.281 -20.624 0.601 7.848 -0.494 -0.687 NAM A1E2M 8 A1E2M CAL C5 C 0 1 N N N N N N -1.164 -20.783 1.333 7.616 -0.150 0.719 CAL A1E2M 9 A1E2M CAN C6 C 0 1 N N N N N N -2.800 -21.886 0.303 6.781 0.143 -1.464 CAN A1E2M 10 A1E2M CAG C7 C 0 1 Y N N N N N -1.897 -22.803 0.848 5.887 0.879 -0.498 CAG A1E2M 11 A1E2M CAH C8 C 0 1 Y N N N N N -1.890 -24.161 0.847 4.746 1.638 -0.710 CAH A1E2M 12 A1E2M FBR F1 F 0 1 N N N N N N -2.899 -24.815 0.219 4.271 1.807 -1.963 FBR A1E2M 13 A1E2M CAF C9 C 0 1 Y N N N N N -0.907 -22.129 1.489 6.377 0.708 0.782 CAF A1E2M 14 A1E2M CAE C10 C 0 1 Y N N N N N 0.135 -22.751 2.101 5.728 1.293 1.856 CAE A1E2M 15 A1E2M CAD C11 C 0 1 Y N N N N N 0.156 -24.129 2.115 4.585 2.048 1.653 CAD A1E2M 16 A1E2M OAJ O4 O 0 1 N N N N N N 1.154 -24.871 2.590 3.949 2.621 2.709 OAJ A1E2M 17 A1E2M CAK C12 C 0 1 N N N N N N 2.238 -24.056 3.098 4.516 2.403 4.003 CAK A1E2M 18 A1E2M CAC C13 C 0 1 Y N N N N N -0.853 -24.861 1.444 4.092 2.223 0.364 CAC A1E2M 19 A1E2M OAI O5 O 0 1 N N N N N N -0.761 -26.231 1.526 2.972 2.968 0.157 OAI A1E2M 20 A1E2M CAV C14 C 0 1 N N N N N N -1.121 -27.062 0.378 1.720 2.279 0.190 CAV A1E2M 21 A1E2M CAW C15 C 0 1 N N N N N N 0.098 -27.853 -0.007 0.585 3.274 -0.062 CAW A1E2M 22 A1E2M CAX C16 C 0 1 N N N N N N 1.303 -26.970 -0.278 -0.755 2.537 -0.027 CAX A1E2M 23 A1E2M OAY O6 O 0 1 N N N N N N 1.048 -26.334 -1.569 -1.816 3.466 -0.262 OAY A1E2M 24 A1E2M CAZ C17 C 0 1 Y N N N N N 0.971 -24.980 -1.551 -3.082 2.970 -0.264 CAZ A1E2M 25 A1E2M CBA C18 C 0 1 Y N N N N N 1.888 -24.124 -0.971 -3.282 1.630 -0.045 CBA A1E2M 26 A1E2M CBE C19 C 0 1 Y N N N N N -0.109 -24.430 -2.307 -4.156 3.832 -0.482 CBE A1E2M 27 A1E2M OBP O7 O 0 1 N N N N N N -1.024 -25.320 -2.855 -3.947 5.157 -0.692 OBP A1E2M 28 A1E2M CBQ C20 C 0 1 N N N N N N -2.225 -24.667 -3.396 -5.102 5.970 -0.908 CBQ A1E2M 29 A1E2M CBD C21 C 0 1 Y N N N N N -0.248 -23.070 -2.342 -5.448 3.310 -0.481 CBD A1E2M 30 A1E2M CBC C22 C 0 1 Y N N N N N 0.705 -22.305 -1.735 -5.644 1.979 -0.269 CBC A1E2M 31 A1E2M SEBH SE1 SE 0 0 Y N N N N N 0.688 -20.375 -1.665 -7.260 0.848 -0.187 SEBH A1E2M 32 A1E2M CBB C23 C 0 1 Y N N N N N 1.793 -22.774 -1.020 -4.590 1.073 -0.039 CBB A1E2M 33 A1E2M CBF C24 C 0 1 Y N N N N N 2.709 -21.850 -0.392 -4.931 -0.325 0.173 CBF A1E2M 34 A1E2M CBG C25 C 0 1 Y N N N N N 2.344 -20.512 -0.587 -6.201 -0.788 0.161 CBG A1E2M 35 A1E2M CBI C26 C 0 1 N N N N N N 2.957 -19.357 -0.139 -6.658 -2.106 0.353 CBI A1E2M 36 A1E2M OBK O8 O 0 1 N N N N N N 2.394 -18.259 -0.324 -7.847 -2.349 0.313 OBK A1E2M 37 A1E2M CBJ C27 C 0 1 N N N N N N 4.236 -19.438 0.687 -5.671 -3.216 0.608 CBJ A1E2M 38 A1E2M CBL C28 C 0 1 N N S N N N 4.003 -18.602 2.032 -6.422 -4.537 0.780 CBL A1E2M 39 A1E2M CBM C29 C 0 1 N N N N N N 2.935 -19.261 2.830 -7.105 -4.900 -0.514 CBM A1E2M 40 A1E2M OBN O9 O 0 1 N N N N N N 2.151 -18.491 3.454 -7.828 -6.027 -0.598 OBN A1E2M 41 A1E2M OBO O10 O 0 1 N N N N N N 2.807 -20.521 2.762 -7.000 -4.176 -1.475 OBO A1E2M 42 A1E2M CAB C30 C 0 1 N N N N N N 5.324 -18.373 2.866 -5.433 -5.641 1.162 CAB A1E2M 43 A1E2M CAA C31 C 0 1 N N N N N N 6.402 -18.799 1.969 -6.199 -6.932 1.456 CAA A1E2M 44 A1E2M H1 H1 H 0 1 N N N N N N -2.450 -20.671 -3.554 13.568 -4.318 0.058 H1 A1E2M 45 A1E2M HAR H2 H 0 1 N N N N N N -3.888 -17.571 -1.545 11.399 -1.983 -1.756 HAR A1E2M 46 A1E2M HAS H3 H 0 1 N N N N N N -5.193 -18.636 -2.170 10.398 -3.443 -1.565 HAS A1E2M 47 A1E2M HAQ H4 H 0 1 N N N N N N -4.900 -19.052 0.214 9.388 -2.481 0.485 HAQ A1E2M 48 A1E2M HAT H5 H 0 1 N N N N N N -4.336 -20.484 -0.711 10.389 -1.022 0.294 HAT A1E2M 49 A1E2M H3 H6 H 0 1 N N N N N N -0.317 -20.305 0.819 7.466 -1.058 1.302 H3 A1E2M 50 A1E2M H4 H7 H 0 1 N N N N N N -3.794 -22.009 0.758 7.212 0.845 -2.178 H4 A1E2M 51 A1E2M HAE H8 H 0 1 N N N N N N 0.926 -22.180 2.564 6.115 1.159 2.856 HAE A1E2M 52 A1E2M HAK H9 H 0 1 N N N N N N 3.039 -24.706 3.479 5.533 2.795 4.025 HAK A1E2M 53 A1E2M HAU H10 H 0 1 N N N N N N 2.633 -23.425 2.288 3.913 2.914 4.754 HAU A1E2M 54 A1E2M HAV H11 H 0 1 N N N N N N 1.866 -23.417 3.912 4.534 1.335 4.217 HAV A1E2M 55 A1E2M HAX H12 H 0 1 N N N N N N -1.437 -26.426 -0.462 1.708 1.511 -0.584 HAX A1E2M 56 A1E2M HAW H13 H 0 1 N N N N N N -1.941 -27.743 0.650 1.586 1.814 1.166 HAW A1E2M 57 A1E2M HAZ H14 H 0 1 N N N N N N -0.128 -28.430 -0.916 0.597 4.042 0.711 HAZ A1E2M 58 A1E2M HAY H15 H 0 1 N N N N N N 0.344 -28.543 0.813 0.719 3.739 -1.038 HAY A1E2M 59 A1E2M HA1 H16 H 0 1 N N N N N N 2.220 -27.576 -0.324 -0.768 1.769 -0.800 HA1 A1E2M 60 A1E2M HA0 H17 H 0 1 N N N N N N 1.406 -26.209 0.510 -0.889 2.072 0.950 HA0 A1E2M 61 A1E2M HBA H18 H 0 1 N N N N N N 2.729 -24.557 -0.449 -2.431 0.987 0.124 HBA A1E2M 62 A1E2M HBQ H19 H 0 1 N N N N N N -2.901 -25.429 -3.811 -5.755 5.912 -0.037 HBQ A1E2M 63 A1E2M HBR H20 H 0 1 N N N N N N -2.739 -24.120 -2.592 -4.794 7.004 -1.062 HBR A1E2M 64 A1E2M HBS H21 H 0 1 N N N N N N -1.934 -23.964 -4.190 -5.637 5.615 -1.788 HBS A1E2M 65 A1E2M HBD H22 H 0 1 N N N N N N -1.091 -22.613 -2.838 -6.293 3.961 -0.647 HBD A1E2M 66 A1E2M HBF H23 H 0 1 N N N N N N 3.580 -22.158 0.167 -4.130 -1.028 0.350 HBF A1E2M 67 A1E2M HBJ H24 H 0 1 N N N N N N 4.457 -20.487 0.932 -4.987 -3.295 -0.237 HBJ A1E2M 68 A1E2M HBT H25 H 0 1 N N N N N N 5.075 -19.009 0.120 -5.105 -2.999 1.514 HBT A1E2M 69 A1E2M HBL H26 H 0 1 N N N N N N 3.639 -17.609 1.729 -7.169 -4.431 1.567 HBL A1E2M 70 A1E2M H2 H27 H 0 1 N N N N N N 1.460 -19.002 3.858 -8.247 -6.218 -1.449 H2 A1E2M 71 A1E2M HBU H28 H 0 1 N N N N N N 5.316 -18.982 3.782 -4.740 -5.809 0.337 HBU A1E2M 72 A1E2M HAB H29 H 0 1 N N N N N N 5.437 -17.312 3.133 -4.876 -5.339 2.049 HAB A1E2M 73 A1E2M HBV H30 H 0 1 N N N N N N 7.371 -18.673 2.474 -6.892 -6.765 2.280 HBV A1E2M 74 A1E2M HAA H31 H 0 1 N N N N N N 6.262 -19.857 1.704 -6.756 -7.235 0.569 HAA A1E2M 75 A1E2M HBW H32 H 0 1 N N N N N N 6.382 -18.187 1.055 -5.494 -7.719 1.727 HBW A1E2M 76 A1E2M H5 H5 H 0 1 N N N N N N -1.303 -20.319 2.321 8.469 0.405 1.110 H5 A1E2M 77 A1E2M H6 H6 H 0 1 N N N N N N -2.876 -22.023 -0.786 6.206 -0.617 -1.994 H6 A1E2M 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1E2M CBQ OBP SING N N 1 A1E2M OAU CAS DOUB N N 2 A1E2M OAT CAS SING N N 3 A1E2M OBP CBE SING N N 4 A1E2M CAS CAR SING N N 5 A1E2M CBD CBE SING Y N 6 A1E2M CBD CBC DOUB Y N 7 A1E2M CBE CAZ DOUB Y N 8 A1E2M CAR CAQ SING N N 9 A1E2M CBC SEBH SING Y N 10 A1E2M CBC CBB SING Y N 11 A1E2M SEBH CBG SING Y N 12 A1E2M OAY CAZ SING N N 13 A1E2M OAY CAX SING N N 14 A1E2M CAZ CBA SING Y N 15 A1E2M CBB CBA DOUB Y N 16 A1E2M CBB CBF SING Y N 17 A1E2M CBG CBF DOUB Y N 18 A1E2M CBG CBI SING N N 19 A1E2M CAQ CAO SING N N 20 A1E2M OBK CBI DOUB N N 21 A1E2M CAX CAW SING N N 22 A1E2M CBI CBJ SING N N 23 A1E2M CAW CAV SING N N 24 A1E2M FBR CAH SING N N 25 A1E2M CAO OAP DOUB N N 26 A1E2M CAO NAM SING N N 27 A1E2M CAN NAM SING N N 28 A1E2M CAN CAG SING N N 29 A1E2M CAV OAI SING N N 30 A1E2M NAM CAL SING N N 31 A1E2M CBJ CBL SING N N 32 A1E2M CAH CAG DOUB Y N 33 A1E2M CAH CAC SING Y N 34 A1E2M CAG CAF SING Y N 35 A1E2M CAL CAF SING N N 36 A1E2M CAC OAI SING N N 37 A1E2M CAC CAD DOUB Y N 38 A1E2M CAF CAE DOUB Y N 39 A1E2M CAA CAB SING N N 40 A1E2M CBL CBM SING N N 41 A1E2M CBL CAB SING N N 42 A1E2M CAE CAD SING Y N 43 A1E2M CAD OAJ SING N N 44 A1E2M OAJ CAK SING N N 45 A1E2M OBO CBM DOUB N N 46 A1E2M CBM OBN SING N N 47 A1E2M OAT H1 SING N N 48 A1E2M CAR HAR SING N N 49 A1E2M CAR HAS SING N N 50 A1E2M CAQ HAQ SING N N 51 A1E2M CAQ HAT SING N N 52 A1E2M CAL H3 SING N N 53 A1E2M CAN H4 SING N N 54 A1E2M CAE HAE SING N N 55 A1E2M CAK HAK SING N N 56 A1E2M CAK HAU SING N N 57 A1E2M CAK HAV SING N N 58 A1E2M CAV HAX SING N N 59 A1E2M CAV HAW SING N N 60 A1E2M CAW HAZ SING N N 61 A1E2M CAW HAY SING N N 62 A1E2M CAX HA1 SING N N 63 A1E2M CAX HA0 SING N N 64 A1E2M CBA HBA SING N N 65 A1E2M CBQ HBQ SING N N 66 A1E2M CBQ HBR SING N N 67 A1E2M CBQ HBS SING N N 68 A1E2M CBD HBD SING N N 69 A1E2M CBF HBF SING N N 70 A1E2M CBJ HBJ SING N N 71 A1E2M CBJ HBT SING N N 72 A1E2M CBL HBL SING N N 73 A1E2M OBN H2 SING N N 74 A1E2M CAB HBU SING N N 75 A1E2M CAB HAB SING N N 76 A1E2M CAA HBV SING N N 77 A1E2M CAA HAA SING N N 78 A1E2M CAA HBW SING N N 79 A1E2M CAL H5 SING N N 80 A1E2M CAN H6 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1E2M InChI InChI 1.06 "InChI=1S/C31H34FNO10Se/c1-4-17(31(38)39)10-21(34)26-13-18-11-23(22(40-2)14-25(18)44-26)42-8-5-9-43-30-24(41-3)12-19-15-33(16-20(19)29(30)32)27(35)6-7-28(36)37/h11-14,17H,4-10,15-16H2,1-3H3,(H,36,37)(H,38,39)/t17-/m0/s1" A1E2M InChIKey InChI 1.06 SNUCCPPADCWKKO-KRWDZBQOSA-N A1E2M SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](CC(=O)c1[se]c2cc(OC)c(OCCCOc3c(F)c4CN(Cc4cc3OC)C(=O)CCC(O)=O)cc2c1)C(O)=O" A1E2M SMILES CACTVS 3.385 "CC[CH](CC(=O)c1[se]c2cc(OC)c(OCCCOc3c(F)c4CN(Cc4cc3OC)C(=O)CCC(O)=O)cc2c1)C(O)=O" A1E2M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H](CC(=O)c1cc2cc(c(cc2[se]1)OC)OCCCOc3c(cc4c(c3F)CN(C4)C(=O)CCC(=O)O)OC)C(=O)O" A1E2M SMILES "OpenEye OEToolkits" 2.0.7 "CCC(CC(=O)c1cc2cc(c(cc2[se]1)OC)OCCCOc3c(cc4c(c3F)CN(C4)C(=O)CCC(=O)O)OC)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1E2M _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-ethyl-4-[5-[3-[[4-fluoranyl-6-methoxy-2-(4-oxidanyl-4-oxidanylidene-butanoyl)-1,3-dihydroisoindol-5-yl]oxy]propoxy]-6-methoxy-1-benzoselenophen-2-yl]-4-oxidanylidene-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1E2M "Create component" 2025-12-19 PDBC A1E2M "Initial release" 2026-10-07 RCSB #