data_A1E61 # _chem_comp.id A1E61 _chem_comp.name Verlukast _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H27 Cl N2 O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-[(~{R})-[3-[(~{E})-2-(7-chloranylquinolin-2-yl)ethenyl]phenyl]-[3-(dimethylamino)-3-oxidanylidene-propyl]sulfanyl-methyl]sulfanylpropanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-18 _chem_comp.pdbx_modified_date 2026-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 515.087 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1E61 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9JC0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1E61 C10 C1 C 0 1 Y N N N N N 143.901 163.844 149.929 -1.741 0.891 -1.320 C10 A1E61 1 A1E61 C13 C2 C 0 1 Y N N N N N 145.999 165.589 149.511 0.361 0.881 -3.134 C13 A1E61 2 A1E61 C15 C3 C 0 1 Y N N N N N 144.355 164.637 150.964 -0.445 0.794 -0.857 C15 A1E61 3 A1E61 C17 C4 C 0 1 N N N N N N 145.322 167.517 152.273 3.025 0.669 -2.151 C17 A1E61 4 A1E61 C20 C5 C 0 1 Y N N N N N 145.328 169.240 155.580 5.877 0.396 0.120 C20 A1E61 5 A1E61 C21 C6 C 0 1 Y N N N N N 146.522 169.911 155.590 6.983 0.371 -0.767 C21 A1E61 6 A1E61 C22 C7 C 0 1 Y N N N N N 146.877 170.690 156.711 8.283 0.266 -0.250 C22 A1E61 7 A1E61 C24 C8 C 0 1 Y N N N N N 144.809 170.094 157.786 7.384 0.214 1.972 C24 A1E61 8 A1E61 C28 C9 C 0 1 Y N N N N N 147.011 169.044 153.394 5.467 0.551 -2.594 C28 A1E61 9 A1E61 C01 C10 C 0 1 N N N N N N 142.228 154.921 149.270 -2.960 -6.716 1.011 C01 A1E61 10 A1E61 N02 N1 N 0 1 N N N N N N 142.995 156.072 149.729 -3.705 -5.579 0.465 N02 A1E61 11 A1E61 C03 C11 C 0 1 N N N N N N 144.251 155.810 150.429 -5.057 -5.775 -0.064 C03 A1E61 12 A1E61 C04 C12 C 0 1 N N N N N N 142.485 157.424 149.445 -3.147 -4.352 0.449 C04 A1E61 13 A1E61 O05 O1 O 0 1 N N N N N N 141.462 157.519 148.854 -2.027 -4.190 0.887 O05 A1E61 14 A1E61 C06 C13 C 0 1 N N N N N N 143.229 158.707 149.877 -3.913 -3.183 -0.112 C06 A1E61 15 A1E61 C07 C14 C 0 1 N N N N N N 142.310 159.893 150.238 -3.059 -1.917 -0.012 C07 A1E61 16 A1E61 S08 S1 S 0 1 N N N N N N 142.882 161.330 149.258 -3.982 -0.509 -0.688 S08 A1E61 17 A1E61 C09 C15 C 0 1 N N R N N N 142.711 162.888 150.203 -2.889 0.897 -0.345 C09 A1E61 18 A1E61 C11 C16 C 0 1 Y N N N N N 144.486 163.926 148.678 -1.988 0.988 -2.679 C11 A1E61 19 A1E61 C12 C17 C 0 1 Y N N N N N 145.542 164.798 148.471 -0.940 0.983 -3.582 C12 A1E61 20 A1E61 C14 C18 C 0 1 Y N N N N N 145.413 165.503 150.753 0.618 0.788 -1.763 C14 A1E61 21 A1E61 C16 C19 C 0 1 N N N N N N 145.898 166.371 151.903 2.005 0.679 -1.277 C16 A1E61 22 A1E61 C18 C20 C 0 1 Y N N N N N 145.785 168.398 153.457 4.410 0.561 -1.665 C18 A1E61 23 A1E61 N19 N2 N 0 1 Y N N N N N 144.992 168.501 154.510 4.636 0.490 -0.364 N19 A1E61 24 A1E61 C23 C21 C 0 1 Y N N N N N 146.019 170.775 157.800 8.470 0.190 1.096 C23 A1E61 25 A1E61 C25 C22 C 0 1 Y N N N N N 144.457 169.325 156.683 6.109 0.316 1.505 C25 A1E61 26 A1E61 CL26 CL1 CL 0 0 N N N N N N 143.703 170.203 159.185 7.663 0.115 3.682 CL26 A1E61 27 A1E61 C27 C23 C 0 1 Y N N N N N 147.394 169.825 154.485 6.753 0.451 -2.156 C27 A1E61 28 A1E61 S29 S2 S 0 1 N N N N N N 141.189 163.757 149.672 -3.822 2.444 -0.519 S29 A1E61 29 A1E61 C30 C24 C 0 1 N N N N N N 140.309 162.753 148.426 -5.030 2.346 0.830 C30 A1E61 30 A1E61 C31 C25 C 0 1 N N N N N N 138.928 163.373 148.173 -5.825 3.651 0.899 C31 A1E61 31 A1E61 C32 C26 C 0 1 N N N N N N 138.000 162.383 147.464 -6.829 3.570 2.020 C32 A1E61 32 A1E61 O33 O2 O 0 1 N N N N N N 137.843 162.454 146.217 -6.901 2.570 2.695 O33 A1E61 33 A1E61 O34 O3 O 0 1 N N N N N N 137.403 161.501 148.129 -7.642 4.608 2.269 O34 A1E61 34 A1E61 H1 H1 H 0 1 N N N N N N 146.817 166.275 149.347 1.178 0.877 -3.840 H1 A1E61 35 A1E61 H2 H2 H 0 1 N N N N N N 143.886 164.581 151.935 -0.254 0.723 0.203 H2 A1E61 36 A1E61 H3 H3 H 0 1 N N N N N N 144.469 167.854 151.703 2.829 0.741 -3.211 H3 A1E61 37 A1E61 H5 H4 H 0 1 N N N N N N 147.817 171.221 156.723 9.132 0.246 -0.918 H5 A1E61 38 A1E61 H6 H5 H 0 1 N N N N N N 147.649 168.946 152.528 5.259 0.610 -3.652 H6 A1E61 39 A1E61 H7 H6 H 0 1 N N N N N N 142.745 153.995 149.562 -2.383 -7.188 0.215 H7 A1E61 40 A1E61 H9 H7 H 0 1 N N N N N N 141.227 154.942 149.726 -2.284 -6.366 1.791 H9 A1E61 41 A1E61 H8 H8 H 0 1 N N N N N N 142.132 154.957 148.175 -3.658 -7.439 1.432 H8 A1E61 42 A1E61 H12 H9 H 0 1 N N N N N N 144.718 156.764 150.715 -5.784 -5.634 0.736 H12 A1E61 43 A1E61 H10 H10 H 0 1 N N N N N N 144.050 155.215 151.332 -5.245 -5.052 -0.858 H10 A1E61 44 A1E61 H11 H11 H 0 1 N N N N N N 144.930 155.253 149.767 -5.148 -6.785 -0.463 H11 A1E61 45 A1E61 H13 H12 H 0 1 N N N N N N 143.842 158.468 150.758 -4.156 -3.375 -1.158 H13 A1E61 46 A1E61 H14 H13 H 0 1 N N N N N N 143.883 159.019 149.049 -4.834 -3.046 0.455 H14 A1E61 47 A1E61 H15 H14 H 0 1 N N N N N N 142.384 160.115 151.313 -2.817 -1.725 1.033 H15 A1E61 48 A1E61 H16 H15 H 0 1 N N N N N N 141.267 159.654 149.984 -2.139 -2.054 -0.579 H16 A1E61 49 A1E61 H17 H16 H 0 1 N N N N N N 142.618 162.641 151.271 -2.503 0.818 0.672 H17 A1E61 50 A1E61 H18 H17 H 0 1 N N N N N N 144.121 163.313 147.867 -3.004 1.067 -3.035 H18 A1E61 51 A1E61 H19 H18 H 0 1 N N N N N N 146.008 164.861 147.499 -1.141 1.059 -4.640 H19 A1E61 52 A1E61 H20 H19 H 0 1 N N N N N N 146.764 166.039 152.456 2.201 0.608 -0.217 H20 A1E61 53 A1E61 H22 H20 H 0 1 N N N N N N 146.293 171.371 158.658 9.472 0.109 1.492 H22 A1E61 54 A1E61 H23 H21 H 0 1 N N N N N N 143.517 168.794 156.672 5.279 0.334 2.195 H23 A1E61 55 A1E61 H24 H22 H 0 1 N N N N N N 148.337 170.352 154.483 7.577 0.443 -2.854 H24 A1E61 56 A1E61 H25 H23 H 0 1 N N N N N N 140.190 161.725 148.798 -5.712 1.515 0.648 H25 A1E61 57 A1E61 H26 H24 H 0 1 N N N N N N 140.885 162.740 147.489 -4.509 2.188 1.775 H26 A1E61 58 A1E61 H28 H25 H 0 1 N N N N N N 139.046 164.268 147.544 -5.143 4.482 1.082 H28 A1E61 59 A1E61 H27 H26 H 0 1 N N N N N N 138.480 163.658 149.137 -6.346 3.810 -0.045 H27 A1E61 60 A1E61 H4 H27 H 0 1 N N N N N N 136.874 160.969 147.547 -8.270 4.509 2.998 H4 A1E61 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1E61 O33 C32 DOUB N N 1 A1E61 C32 O34 SING N N 2 A1E61 C32 C31 SING N N 3 A1E61 C31 C30 SING N N 4 A1E61 C30 S29 SING N N 5 A1E61 C12 C11 DOUB Y N 6 A1E61 C12 C13 SING Y N 7 A1E61 C11 C10 SING Y N 8 A1E61 O05 C04 DOUB N N 9 A1E61 S08 C09 SING N N 10 A1E61 S08 C07 SING N N 11 A1E61 C01 N02 SING N N 12 A1E61 C04 N02 SING N N 13 A1E61 C04 C06 SING N N 14 A1E61 C13 C14 DOUB Y N 15 A1E61 S29 C09 SING N N 16 A1E61 N02 C03 SING N N 17 A1E61 C06 C07 SING N N 18 A1E61 C10 C09 SING N N 19 A1E61 C10 C15 DOUB Y N 20 A1E61 C14 C15 SING Y N 21 A1E61 C14 C16 SING N N 22 A1E61 C16 C17 DOUB N E 23 A1E61 C17 C18 SING N N 24 A1E61 C28 C18 DOUB Y N 25 A1E61 C28 C27 SING Y N 26 A1E61 C18 N19 SING Y N 27 A1E61 C27 C21 DOUB Y N 28 A1E61 N19 C20 DOUB Y N 29 A1E61 C20 C21 SING Y N 30 A1E61 C20 C25 SING Y N 31 A1E61 C21 C22 SING Y N 32 A1E61 C25 C24 DOUB Y N 33 A1E61 C22 C23 DOUB Y N 34 A1E61 C24 C23 SING Y N 35 A1E61 C24 CL26 SING N N 36 A1E61 C13 H1 SING N N 37 A1E61 C15 H2 SING N N 38 A1E61 C17 H3 SING N N 39 A1E61 C22 H5 SING N N 40 A1E61 C28 H6 SING N N 41 A1E61 C01 H7 SING N N 42 A1E61 C01 H9 SING N N 43 A1E61 C01 H8 SING N N 44 A1E61 C03 H12 SING N N 45 A1E61 C03 H10 SING N N 46 A1E61 C03 H11 SING N N 47 A1E61 C06 H13 SING N N 48 A1E61 C06 H14 SING N N 49 A1E61 C07 H15 SING N N 50 A1E61 C07 H16 SING N N 51 A1E61 C09 H17 SING N N 52 A1E61 C11 H18 SING N N 53 A1E61 C12 H19 SING N N 54 A1E61 C16 H20 SING N N 55 A1E61 C23 H22 SING N N 56 A1E61 C25 H23 SING N N 57 A1E61 C27 H24 SING N N 58 A1E61 C30 H25 SING N N 59 A1E61 C30 H26 SING N N 60 A1E61 C31 H28 SING N N 61 A1E61 C31 H27 SING N N 62 A1E61 O34 H4 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1E61 InChI InChI 1.06 "InChI=1S/C26H27ClN2O3S2/c1-29(2)24(30)12-14-33-26(34-15-13-25(31)32)20-5-3-4-18(16-20)6-10-22-11-8-19-7-9-21(27)17-23(19)28-22/h3-11,16-17,26H,12-15H2,1-2H3,(H,31,32)/b10-6+/t26-/m1/s1" A1E61 InChIKey InChI 1.06 AXUZQJFHDNNPFG-LHAVAQOQSA-N A1E61 SMILES_CANONICAL CACTVS 3.385 "CN(C)C(=O)CCS[C@H](SCCC(O)=O)c1cccc(\C=C\c2ccc3ccc(Cl)cc3n2)c1" A1E61 SMILES CACTVS 3.385 "CN(C)C(=O)CCS[CH](SCCC(O)=O)c1cccc(C=Cc2ccc3ccc(Cl)cc3n2)c1" A1E61 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)CCS[C@@H](c1cccc(c1)/C=C/c2ccc3ccc(cc3n2)Cl)SCCC(=O)O" A1E61 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)CCSC(c1cccc(c1)C=Cc2ccc3ccc(cc3n2)Cl)SCCC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1E61 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[(~{R})-[3-[(~{E})-2-(7-chloranylquinolin-2-yl)ethenyl]phenyl]-[3-(dimethylamino)-3-oxidanylidene-propyl]sulfanyl-methyl]sulfanylpropanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1E61 "Create component" 2026-03-18 PDBC A1E61 "Initial release" 2026-04-01 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1E61 _pdbx_chem_comp_synonyms.name "3-[(~{R})-[3-[(~{E})-2-(7-chloranylquinolin-2-yl)ethenyl]phenyl]-[3-(dimethylamino)-3-oxidanylidene-propyl]sulfanyl-methyl]sulfanylpropanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #