data_A1EAU # _chem_comp.id A1EAU _chem_comp.name "~{N}2,~{N}6-bis[2-[2-[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyethoxy]ethyl]naphthalene-2,6-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H46 N2 O16" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-19 _chem_comp.pdbx_modified_date 2024-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 714.711 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EAU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9J1C _chem_comp.pdbx_subcomponent_list "NDD I2J MAN I2J MAN" _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EAU C6 C2 C 0 1 Y N N N N N 0.205 15.427 -17.594 1.143 3.080 -1.464 C1 NDD 1 A1EAU C7 C24 C 0 1 Y N N N N N -0.612 15.239 -16.483 2.367 3.080 -0.816 C2 NDD 2 A1EAU C8 C25 C 0 1 Y N N N N N -0.066 15.180 -15.212 2.431 3.080 0.588 C3 NDD 3 A1EAU C9 C26 C 0 1 Y N N N N N 1.314 15.314 -15.075 1.299 3.081 1.337 C4 NDD 4 A1EAU C4 C4 C 0 1 Y N N N N N 2.146 15.503 -16.184 0.039 3.080 0.709 C4A NDD 5 A1EAU C5 C1 C 0 1 Y N N N N N 3.529 15.637 -16.037 -1.143 3.080 1.464 C5 NDD 6 A1EAU C C5 C 0 1 Y N N N N N 4.339 15.829 -17.157 -2.367 3.080 0.816 C6 NDD 7 A1EAU C1 C6 C 0 1 Y N N N N N 3.757 15.893 -18.416 -2.431 3.080 -0.588 C7 NDD 8 A1EAU C2 C3 C 0 1 Y N N N N N 2.380 15.755 -18.570 -1.299 3.079 -1.337 C8 NDD 9 A1EAU C3 C18 C 0 1 Y N N N N N 1.579 15.565 -17.452 -0.039 3.080 -0.708 C8A NDD 10 A1EAU C31 C19 C 0 1 N N N N N N -2.078 15.082 -16.719 3.616 3.080 -1.608 "C2'" NDD 11 A1EAU O8 O9 O 0 1 N N N N N N -2.437 15.124 -17.881 3.565 3.079 -2.822 "O1'" NDD 12 A1EAU C11 C7 C 0 1 N N N N N N 5.835 15.987 -17.032 -3.616 3.080 1.608 "C6'" NDD 13 A1EAU O O1 O 0 1 N N N N N N 6.500 15.108 -16.473 -3.566 3.079 2.822 "O3'" NDD 14 A1EAU C29 C16 C 0 1 N N N N N N 7.716 14.360 -21.234 -8.287 0.417 -1.574 C4 I2J 15 A1EAU C16 C11 C 0 1 N N N N N N 6.736 14.851 -20.172 -8.363 1.756 -0.838 C3 I2J 16 A1EAU C14 C9 C 0 1 N N N N N N 6.472 17.249 -20.082 -7.250 3.079 0.822 C2 I2J 17 A1EAU C13 C8 C 0 1 N N N N N N 7.229 17.115 -18.747 -6.047 3.079 1.767 C1 I2J 18 A1EAU N N2 N 0 1 N N N N N N 6.379 17.100 -17.560 -4.810 3.080 0.983 N I2J 19 A1EAU O1 O2 O 0 1 N N N N N N 5.991 15.996 -20.608 -7.273 1.858 0.079 O2 I2J 20 A1EAU O1M2 O11 O 0 0 N N N N N N 8.410 13.210 -20.740 -8.476 -0.650 -0.641 O4 I2J 21 A1EAU C1M2 C27 C 0 0 N N S N N N 8.055 12.026 -21.443 -8.423 -1.952 -1.229 C1 MAN 22 A1EAU C2M2 C28 C 0 0 N N S N N N 8.606 12.129 -22.858 -8.880 -2.993 -0.204 C2 MAN 23 A1EAU C3M2 C29 C 0 0 N N S N N N 7.523 11.920 -23.918 -7.918 -2.981 0.988 C3 MAN 24 A1EAU C4M2 C30 C 0 0 N N S N N N 6.599 10.779 -23.569 -6.496 -3.246 0.484 C4 MAN 25 A1EAU C5M2 C31 C 0 0 N N R N N N 6.074 10.881 -22.151 -6.131 -2.195 -0.567 C5 MAN 26 A1EAU C6M2 C32 C 0 0 N N N N N N 6.380 9.631 -21.362 -4.734 -2.488 -1.118 C6 MAN 27 A1EAU O2M2 O12 O 0 0 N N N N N N 9.658 11.173 -23.002 -8.880 -4.288 -0.807 O2 MAN 28 A1EAU O3M2 O13 O 0 0 N N N N N N 8.082 11.636 -25.212 -8.295 -4.001 1.916 O3 MAN 29 A1EAU O4M2 O14 O 0 0 N N N N N N 5.482 10.873 -24.451 -5.580 -3.166 1.578 O4 MAN 30 A1EAU O5M2 O15 O 0 0 N N N N N N 6.638 11.984 -21.461 -7.083 -2.238 -1.632 O5 MAN 31 A1EAU O6M2 O16 O 0 0 N N N N N N 5.151 8.999 -21.050 -4.346 -1.443 -2.013 O6 MAN 32 A1EAU C18 C13 C 0 1 N N N N N N -5.650 17.287 -14.382 8.287 0.417 1.574 C4 I2J 33 A1EAU C22 C15 C 0 1 N N N N N N -6.304 16.485 -15.513 8.363 1.757 0.838 C3 I2J 34 A1EAU C17 C12 C 0 1 N N N N N N -5.278 14.410 -14.911 7.250 3.079 -0.822 C2 I2J 35 A1EAU C15 C10 C 0 1 N N N N N N -4.331 14.552 -16.102 6.047 3.079 -1.767 C1 I2J 36 A1EAU N1 N1 N 0 1 N N N N N N -2.952 14.857 -15.737 4.810 3.080 -0.983 N I2J 37 A1EAU O9 O10 O 0 1 N N N N N N -6.504 15.112 -15.150 7.273 1.859 -0.080 O2 I2J 38 A1EAU O1M O3 O 0 1 N N N N N N -4.703 18.209 -14.946 8.476 -0.650 0.642 O4 I2J 39 A1EAU C1M C14 C 0 1 N N S N N N -3.836 18.897 -14.032 8.423 -1.951 1.229 C1 MAN 40 A1EAU C2M C17 C 0 1 N N S N N N -3.998 18.398 -12.594 8.881 -2.993 0.205 C2 MAN 41 A1EAU C3M C20 C 0 1 N N S N N N -4.582 19.426 -11.651 7.919 -2.982 -0.987 C3 MAN 42 A1EAU C4M C21 C 0 1 N N S N N N -3.882 20.775 -11.771 6.497 -3.246 -0.484 C4 MAN 43 A1EAU C5M C22 C 0 1 N N R N N N -3.604 21.219 -13.200 6.131 -2.195 0.567 C5 MAN 44 A1EAU C6M C23 C 0 1 N N N N N N -2.117 21.511 -13.362 4.734 -2.488 1.117 C6 MAN 45 A1EAU O2M O4 O 0 1 N N N N N N -2.710 18.065 -12.095 8.879 -4.288 0.808 O2 MAN 46 A1EAU O3M O5 O 0 1 N N N N N N -4.450 18.953 -10.300 8.296 -4.001 -1.915 O3 MAN 47 A1EAU O4M O6 O 0 1 N N N N N N -4.762 21.750 -11.220 5.581 -3.167 -1.578 O4 MAN 48 A1EAU O5M O7 O 0 1 N N N N N N -4.100 20.297 -14.187 7.082 -2.238 1.632 O5 MAN 49 A1EAU O6M O8 O 0 1 N N N N N N -1.815 21.886 -14.700 4.346 -1.443 2.011 O6 MAN 50 A1EAU H2 H2 H 0 1 N N N N N N -0.236 15.466 -18.579 1.099 3.085 -2.543 H1 NDD 51 A1EAU H30 H30 H 0 1 N N N N N N -0.695 15.033 -14.347 3.394 3.080 1.077 H3 NDD 52 A1EAU H31 H31 H 0 1 N N N N N N 1.752 15.271 -14.089 1.364 3.081 2.415 H4 NDD 53 A1EAU H1 H1 H 0 1 N N N N N N 3.973 15.592 -15.053 -1.099 3.080 2.543 H5 NDD 54 A1EAU H6 H6 H 0 1 N N N N N N 4.379 16.051 -19.285 -3.394 3.080 -1.078 H7 NDD 55 A1EAU H4 H4 H 0 1 N N N N N N 1.937 15.796 -19.554 -1.364 3.079 -2.414 H8 NDD 56 A1EAU H22 H22 H 0 1 N N N N N N 8.440 15.156 -21.463 -9.066 0.376 -2.336 H1 I2J 57 A1EAU H23 H23 H 0 1 N N N N N N 7.165 14.092 -22.147 -7.310 0.317 -2.047 H2 I2J 58 A1EAU H13 H13 H 0 1 N N N N N N 6.032 14.039 -19.938 -8.308 2.571 -1.561 H3 I2J 59 A1EAU H14 H14 H 0 1 N N N N N N 7.300 15.120 -19.267 -9.305 1.818 -0.292 H4 I2J 60 A1EAU H9 H9 H 0 1 N N N N N N 7.151 17.698 -20.822 -8.168 3.168 1.402 H5 I2J 61 A1EAU H10 H10 H 0 1 N N N N N N 5.609 17.913 -19.926 -7.172 3.921 0.134 H6 I2J 62 A1EAU H7 H7 H 0 1 N N N N N N 7.801 16.175 -18.771 -6.079 3.969 2.396 H7 I2J 63 A1EAU H8 H8 H 0 1 N N N N N N 7.923 17.964 -18.660 -6.079 2.189 2.395 H8 I2J 64 A1EAU H5 H5 H 0 1 N N N N N N 6.188 17.973 -17.110 -4.850 3.080 0.014 H11 I2J 65 A1EAU H36 H36 H 0 1 N N N N N N 8.471 11.135 -20.950 -9.080 -1.985 -2.099 H1 MAN 66 A1EAU H37 H37 H 0 1 N N N N N N 9.017 13.141 -22.990 -9.887 -2.751 0.137 H2 MAN 67 A1EAU H38 H38 H 0 1 N N N N N N 6.925 12.841 -23.978 -7.957 -2.009 1.478 H3 MAN 68 A1EAU H39 H39 H 0 1 N N N N N N 7.125 9.822 -23.701 -6.446 -4.240 0.039 H4 MAN 69 A1EAU H40 H40 H 0 1 N N N N N N 4.981 10.999 -22.198 -6.142 -1.205 -0.110 H5 MAN 70 A1EAU H41 H41 H 0 1 N N N N N N 7.006 8.954 -21.962 -4.023 -2.544 -0.294 H61 MAN 71 A1EAU H42 H42 H 0 1 N N N N N N 6.910 9.895 -20.435 -4.747 -3.438 -1.653 H62 MAN 72 A1EAU H43 H43 H 0 1 N N N N N N 10.317 11.323 -22.334 -9.465 -4.366 -1.573 HO2 MAN 73 A1EAU H44 H44 H 0 1 N N N N N N 8.671 12.337 -25.464 -9.186 -3.896 2.275 HO3 MAN 74 A1EAU H45 H45 H 0 1 N N N N N N 4.871 10.170 -24.265 -5.755 -3.802 2.285 HO4 MAN 75 A1EAU H46 H46 H 0 1 N N N N N N 5.319 8.208 -20.552 -3.469 -1.564 -2.401 HO6 MAN 76 A1EAU H17 H17 H 0 1 N N N N N N -6.422 17.843 -13.831 9.066 0.376 2.335 H1 I2J 77 A1EAU H18 H18 H 0 1 N N N N N N -5.132 16.601 -13.696 7.310 0.317 2.047 H2 I2J 78 A1EAU H20 H20 H 0 1 N N N N N N -5.655 16.527 -16.400 8.308 2.571 1.560 H3 I2J 79 A1EAU H21 H21 H 0 1 N N N N N N -7.279 16.936 -15.750 9.305 1.818 0.292 H4 I2J 80 A1EAU H15 H15 H 0 1 N N N N N N -5.498 13.344 -14.750 8.168 3.168 -1.403 H5 I2J 81 A1EAU H16 H16 H 0 1 N N N N N N -4.794 14.824 -14.014 7.172 3.921 -0.135 H6 I2J 82 A1EAU H11 H11 H 0 1 N N N N N N -4.705 15.362 -16.745 6.079 3.969 -2.396 H7 I2J 83 A1EAU H12 H12 H 0 1 N N N N N N -4.338 13.606 -16.663 6.079 2.189 -2.395 H8 I2J 84 A1EAU H3 H3 H 0 1 N N N N N N -2.670 14.896 -14.778 4.850 3.080 -0.014 H11 I2J 85 A1EAU H19 H19 H 0 1 N N N N N N -2.794 18.704 -14.329 9.079 -1.984 2.099 H1 MAN 86 A1EAU H24 H24 H 0 1 N N N N N N -4.646 17.509 -12.599 9.887 -2.751 -0.136 H2 MAN 87 A1EAU H25 H25 H 0 1 N N N N N N -5.646 19.562 -11.894 7.958 -2.009 -1.478 H3 MAN 88 A1EAU H26 H26 H 0 1 N N N N N N -2.936 20.744 -11.210 6.447 -4.240 -0.039 H4 MAN 89 A1EAU H27 H27 H 0 1 N N N N N N -4.130 22.175 -13.342 6.142 -1.205 0.110 H5 MAN 90 A1EAU H28 H28 H 0 1 N N N N N N -1.543 20.609 -13.103 4.023 -2.544 0.293 H61 MAN 91 A1EAU H29 H29 H 0 1 N N N N N N -1.836 22.332 -12.686 4.746 -3.438 1.652 H62 MAN 92 A1EAU H32 H32 H 0 1 N N N N N N -2.787 17.752 -11.201 9.463 -4.366 1.574 HO2 MAN 93 A1EAU H33 H33 H 0 1 N N N N N N -4.815 19.595 -9.702 9.190 -3.900 -2.269 HO3 MAN 94 A1EAU H34 H34 H 0 1 N N N N N N -4.969 21.519 -10.322 5.756 -3.803 -2.285 HO4 MAN 95 A1EAU H35 H35 H 0 1 N N N N N N -0.885 22.063 -14.778 3.468 -1.563 2.399 HO6 MAN 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EAU O3M2 C3M2 SING N N 1 A1EAU O4M2 C4M2 SING N N 2 A1EAU C3M2 C4M2 SING N N 3 A1EAU C3M2 C2M2 SING N N 4 A1EAU C4M2 C5M2 SING N N 5 A1EAU O2M2 C2M2 SING N N 6 A1EAU C2M2 C1M2 SING N N 7 A1EAU C5M2 O5M2 SING N N 8 A1EAU C5M2 C6M2 SING N N 9 A1EAU O5M2 C1M2 SING N N 10 A1EAU C1M2 O1M2 SING N N 11 A1EAU C6M2 O6M2 SING N N 12 A1EAU C29 O1M2 SING N N 13 A1EAU C29 C16 SING N N 14 A1EAU O1 C16 SING N N 15 A1EAU O1 C14 SING N N 16 A1EAU C14 C13 SING N N 17 A1EAU C13 N SING N N 18 A1EAU C2 C1 DOUB Y N 19 A1EAU C2 C3 SING Y N 20 A1EAU C1 C SING Y N 21 A1EAU O8 C31 DOUB N N 22 A1EAU C6 C3 DOUB Y N 23 A1EAU C6 C7 SING Y N 24 A1EAU N C11 SING N N 25 A1EAU C3 C4 SING Y N 26 A1EAU C C11 SING N N 27 A1EAU C C5 DOUB Y N 28 A1EAU C11 O DOUB N N 29 A1EAU C31 C7 SING N N 30 A1EAU C31 N1 SING N N 31 A1EAU C7 C8 DOUB Y N 32 A1EAU C4 C5 SING Y N 33 A1EAU C4 C9 DOUB Y N 34 A1EAU C15 N1 SING N N 35 A1EAU C15 C17 SING N N 36 A1EAU C22 O9 SING N N 37 A1EAU C22 C18 SING N N 38 A1EAU C8 C9 SING Y N 39 A1EAU O9 C17 SING N N 40 A1EAU O1M C18 SING N N 41 A1EAU O1M C1M SING N N 42 A1EAU O6M C6M SING N N 43 A1EAU O5M C1M SING N N 44 A1EAU O5M C5M SING N N 45 A1EAU C1M C2M SING N N 46 A1EAU C6M C5M SING N N 47 A1EAU C5M C4M SING N N 48 A1EAU C2M O2M SING N N 49 A1EAU C2M C3M SING N N 50 A1EAU C4M C3M SING N N 51 A1EAU C4M O4M SING N N 52 A1EAU C3M O3M SING N N 53 A1EAU C5 H1 SING N N 54 A1EAU C6 H2 SING N N 55 A1EAU N1 H3 SING N N 56 A1EAU C2 H4 SING N N 57 A1EAU N H5 SING N N 58 A1EAU C1 H6 SING N N 59 A1EAU C13 H7 SING N N 60 A1EAU C13 H8 SING N N 61 A1EAU C14 H9 SING N N 62 A1EAU C14 H10 SING N N 63 A1EAU C15 H11 SING N N 64 A1EAU C15 H12 SING N N 65 A1EAU C16 H13 SING N N 66 A1EAU C16 H14 SING N N 67 A1EAU C17 H15 SING N N 68 A1EAU C17 H16 SING N N 69 A1EAU C18 H17 SING N N 70 A1EAU C18 H18 SING N N 71 A1EAU C1M H19 SING N N 72 A1EAU C22 H20 SING N N 73 A1EAU C22 H21 SING N N 74 A1EAU C29 H22 SING N N 75 A1EAU C29 H23 SING N N 76 A1EAU C2M H24 SING N N 77 A1EAU C3M H25 SING N N 78 A1EAU C4M H26 SING N N 79 A1EAU C5M H27 SING N N 80 A1EAU C6M H28 SING N N 81 A1EAU C6M H29 SING N N 82 A1EAU C8 H30 SING N N 83 A1EAU C9 H31 SING N N 84 A1EAU O2M H32 SING N N 85 A1EAU O3M H33 SING N N 86 A1EAU O4M H34 SING N N 87 A1EAU O6M H35 SING N N 88 A1EAU C1M2 H36 SING N N 89 A1EAU C2M2 H37 SING N N 90 A1EAU C3M2 H38 SING N N 91 A1EAU C4M2 H39 SING N N 92 A1EAU C5M2 H40 SING N N 93 A1EAU C6M2 H41 SING N N 94 A1EAU C6M2 H42 SING N N 95 A1EAU O2M2 H43 SING N N 96 A1EAU O3M2 H44 SING N N 97 A1EAU O4M2 H45 SING N N 98 A1EAU O6M2 H46 SING N N 99 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EAU InChI InChI 1.06 "InChI=1S/C32H46N2O16/c35-15-21-23(37)25(39)27(41)31(49-21)47-11-9-45-7-5-33-29(43)19-3-1-17-13-20(4-2-18(17)14-19)30(44)34-6-8-46-10-12-48-32-28(42)26(40)24(38)22(16-36)50-32/h1-4,13-14,21-28,31-32,35-42H,5-12,15-16H2,(H,33,43)(H,34,44)/t21-,22-,23-,24-,25+,26+,27+,28+,31+,32+/m1/s1" A1EAU InChIKey InChI 1.06 IGDPOUCLGLHGCQ-IEOQPZBNSA-N A1EAU SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](OCCOCCNC(=O)c2ccc3cc(ccc3c2)C(=O)NCCOCCO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@@H](O)[C@@H]1O" A1EAU SMILES CACTVS 3.385 "OC[CH]1O[CH](OCCOCCNC(=O)c2ccc3cc(ccc3c2)C(=O)NCCOCCO[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)[CH](O)[CH](O)[CH]1O" A1EAU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc2c1cc(cc2)C(=O)NCCOCCO[C@@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)C(=O)NCCOCCO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O" A1EAU SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc2c1cc(cc2)C(=O)NCCOCCOC3C(C(C(C(O3)CO)O)O)O)C(=O)NCCOCCOC4C(C(C(C(O4)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1EAU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}2,~{N}6-bis[2-[2-[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyethoxy]ethyl]naphthalene-2,6-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EAU "Create component" 2024-08-19 PDBC A1EAU "Initial release" 2024-12-04 RCSB #