data_A1EBK # _chem_comp.id A1EBK _chem_comp.name "1-[(13~{a}~{R})-2,3-dimethoxy-6,8,13,13~{a}-tetrahydro-5~{H}-isoquinolino[3,2-a]isoquinolin-10-yl]-3-[[4-(trifluoromethyloxy)phenyl]methyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H28 F3 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-06 _chem_comp.pdbx_modified_date 2025-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 527.535 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9JFM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EBK C1 C1 C 0 1 N N N N N N 7.451 8.677 26.027 10.740 1.542 1.428 C1 A1EBK 1 A1EBK C3 C2 C 0 1 Y N N N N N 8.607 8.193 23.991 9.019 0.275 0.385 C3 A1EBK 2 A1EBK C4 C3 C 0 1 Y N N N N N 8.649 7.441 22.804 8.535 -0.872 -0.237 C4 A1EBK 3 A1EBK C6 C4 C 0 1 N N N N N N 6.319 7.281 22.303 8.789 -3.077 -1.090 C6 A1EBK 4 A1EBK C7 C5 C 0 1 Y N N N N N 9.719 7.581 21.945 7.213 -0.924 -0.644 C7 A1EBK 5 A1EBK C8 C6 C 0 1 Y N N N N N 10.755 8.463 22.232 6.375 0.161 -0.436 C8 A1EBK 6 A1EBK O5 O1 O 0 1 N N N N N N 7.569 6.648 22.550 9.356 -1.936 -0.445 O5 A1EBK 7 A1EBK C10 C7 C 0 1 N N N N N N 11.202 9.037 19.953 4.145 -0.662 0.210 C10 A1EBK 8 A1EBK C11 C8 C 0 1 Y N N N N N 12.156 9.697 18.994 2.665 -0.520 -0.021 C11 A1EBK 9 A1EBK C12 C9 C 0 1 Y N N N N N 12.026 9.512 17.624 1.807 -1.391 0.635 C12 A1EBK 10 A1EBK C13 C10 C 0 1 Y N N N N N 12.906 10.100 16.740 0.442 -1.294 0.458 C13 A1EBK 11 A1EBK C14 C11 C 0 1 Y N N N N N 13.936 10.892 17.211 -0.077 -0.318 -0.382 C14 A1EBK 12 A1EBK C16 C12 C 0 1 N N N N N N 15.995 10.853 15.842 -2.299 -0.506 0.449 C16 A1EBK 13 A1EBK C18 C13 C 0 1 N N N N N N 17.812 10.908 14.192 -4.542 -0.826 1.345 C18 A1EBK 14 A1EBK C19 C14 C 0 1 Y N N N N N 17.596 10.202 12.878 -5.965 -0.758 0.855 C19 A1EBK 15 A1EBK C20 C15 C 0 1 Y N N N N N 16.407 10.352 12.178 -6.570 -1.886 0.333 C20 A1EBK 16 A1EBK C21 C16 C 0 1 Y N N N N N 16.191 9.689 10.984 -7.876 -1.826 -0.116 C21 A1EBK 17 A1EBK C22 C17 C 0 1 Y N N N N N 17.172 8.858 10.473 -8.579 -0.633 -0.043 C22 A1EBK 18 A1EBK C24 C18 C 0 1 N N N N N N 16.993 8.908 8.141 -10.525 0.691 -0.379 C24 A1EBK 19 A1EBK C28 C19 C 0 1 Y N N N N N 18.364 8.695 11.158 -7.969 0.498 0.481 C28 A1EBK 20 A1EBK C29 C20 C 0 1 Y N N N N N 18.568 9.365 12.351 -6.666 0.431 0.935 C29 A1EBK 21 A1EBK C31 C21 C 0 1 Y N N N N N 14.079 11.090 18.582 0.782 0.550 -1.039 C31 A1EBK 22 A1EBK C32 C22 C 0 1 Y N N N N N 13.193 10.497 19.481 2.152 0.447 -0.861 C32 A1EBK 23 A1EBK C33 C23 C 0 1 N N N N N N 13.338 10.707 20.961 3.046 1.403 -1.604 C33 A1EBK 24 A1EBK C35 C24 C 0 1 N N N N N N 13.081 9.512 23.221 4.513 2.162 0.197 C35 A1EBK 25 A1EBK C36 C25 C 0 1 N N N N N N 11.830 10.158 23.739 5.988 2.514 0.402 C36 A1EBK 26 A1EBK C37 C26 C 0 1 Y N N N N N 10.713 9.210 23.410 6.853 1.300 0.174 C37 A1EBK 27 A1EBK C38 C27 C 0 1 Y N N N N N 9.637 9.070 24.280 8.177 1.354 0.588 C38 A1EBK 28 A1EBK C9 C28 C 0 1 N N R N N N 11.889 8.569 21.233 4.936 0.053 -0.890 C9 A1EBK 29 A1EBK F25 F1 F 0 1 N N N N N N 15.947 9.694 8.015 -9.826 1.649 -1.121 F25 A1EBK 30 A1EBK F26 F2 F 0 1 N N N N N N 17.033 8.148 7.070 -10.570 1.082 0.963 F26 A1EBK 31 A1EBK F27 F3 F 0 1 N N N N N N 18.056 9.673 8.100 -11.828 0.576 -0.876 F27 A1EBK 32 A1EBK N15 N1 N 0 1 N N N N N N 14.798 11.385 16.216 -1.460 -0.211 -0.564 N15 A1EBK 33 A1EBK N17 N2 N 0 1 N N N N N N 16.572 11.416 14.764 -3.631 -0.507 0.243 N17 A1EBK 34 A1EBK N34 N3 N 0 1 N N N N N N 13.010 9.463 21.723 4.394 1.408 -1.055 N34 A1EBK 35 A1EBK O2 O2 O 0 1 N N N N N N 7.535 7.954 24.802 10.314 0.333 0.797 O2 A1EBK 36 A1EBK O23 O3 O 0 1 N N N N N N 16.956 8.188 9.258 -9.862 -0.571 -0.485 O23 A1EBK 37 A1EBK O30 O4 O 0 1 N N N N N N 16.529 9.968 16.467 -1.853 -0.770 1.549 O30 A1EBK 38 A1EBK H1C H1 H 0 1 N N N N N N 6.540 8.379 26.567 10.615 2.376 0.737 H1C A1EBK 39 A1EBK H1B H2 H 0 1 N N N N N N 8.333 8.455 26.645 10.141 1.717 2.321 H1B A1EBK 40 A1EBK H1A H3 H 0 1 N N N N N N 7.415 9.756 25.814 11.790 1.455 1.706 H1A A1EBK 41 A1EBK H6B H4 H 0 1 N N N N N N 5.551 6.516 22.116 9.549 -3.851 -1.194 H6B A1EBK 42 A1EBK H6A H5 H 0 1 N N N N N N 6.033 7.882 23.179 7.962 -3.459 -0.491 H6A A1EBK 43 A1EBK H6C H6 H 0 1 N N N N N N 6.407 7.935 21.423 8.422 -2.793 -2.076 H6C A1EBK 44 A1EBK H7 H7 H 0 1 N N N N N N 9.753 6.997 21.037 6.832 -1.812 -1.125 H7 A1EBK 45 A1EBK H10B H8 H 0 0 N N N N N N 10.750 8.166 19.457 4.401 -0.228 1.177 H10B A1EBK 46 A1EBK H10A H9 H 0 0 N N N N N N 10.414 9.757 20.219 4.408 -1.720 0.211 H10A A1EBK 47 A1EBK H12 H10 H 0 1 N N N N N N 11.223 8.898 17.245 2.210 -2.150 1.288 H12 A1EBK 48 A1EBK H13 H11 H 0 1 N N N N N N 12.790 9.941 15.678 -0.220 -1.976 0.971 H13 A1EBK 49 A1EBK H18B H12 H 0 0 N N N N N N 18.498 11.753 14.030 -4.401 -0.109 2.153 H18B A1EBK 50 A1EBK H18A H13 H 0 0 N N N N N N 18.264 10.200 14.902 -4.331 -1.832 1.711 H18A A1EBK 51 A1EBK H20 H14 H 0 1 N N N N N N 15.637 10.998 12.573 -6.023 -2.815 0.276 H20 A1EBK 52 A1EBK H21 H15 H 0 1 N N N N N N 15.260 9.819 10.452 -8.348 -2.708 -0.524 H21 A1EBK 53 A1EBK H28 H16 H 0 1 N N N N N N 19.132 8.047 10.762 -8.515 1.428 0.539 H28 A1EBK 54 A1EBK H29 H17 H 0 1 N N N N N N 19.500 9.234 12.881 -6.191 1.311 1.343 H29 A1EBK 55 A1EBK H31 H18 H 0 1 N N N N N N 14.883 11.708 18.952 0.380 1.311 -1.692 H31 A1EBK 56 A1EBK H33B H19 H 0 0 N N N N N N 14.376 10.999 21.181 3.089 1.108 -2.653 H33B A1EBK 57 A1EBK H33A H20 H 0 0 N N N N N N 12.656 11.510 21.277 2.629 2.408 -1.534 H33A A1EBK 58 A1EBK H35B H21 H 0 0 N N N N N N 13.164 8.491 23.622 4.161 1.551 1.029 H35B A1EBK 59 A1EBK H35A H22 H 0 0 N N N N N N 13.957 10.100 23.531 3.922 3.075 0.135 H35A A1EBK 60 A1EBK H36A H23 H 0 0 N N N N N N 11.898 10.307 24.827 6.273 3.297 -0.300 H36A A1EBK 61 A1EBK H36B H24 H 0 0 N N N N N N 11.667 11.128 23.246 6.135 2.872 1.421 H36B A1EBK 62 A1EBK H38 H25 H 0 1 N N N N N N 9.605 9.651 25.190 8.552 2.243 1.073 H38 A1EBK 63 A1EBK H9 H26 H 0 1 N N N N N N 12.296 7.562 21.059 4.876 -0.507 -1.822 H9 A1EBK 64 A1EBK H15 H27 H 0 1 N N N N N N 14.503 12.210 15.734 -1.816 0.075 -1.420 H15 A1EBK 65 A1EBK H17 H28 H 0 1 N N N N N N 16.135 12.210 14.341 -3.986 -0.295 -0.634 H17 A1EBK 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EBK C1 O2 SING N N 1 A1EBK O2 C3 SING N N 2 A1EBK C3 C4 DOUB Y N 3 A1EBK C4 O5 SING N N 4 A1EBK O5 C6 SING N N 5 A1EBK C4 C7 SING Y N 6 A1EBK C7 C8 DOUB Y N 7 A1EBK C8 C9 SING N N 8 A1EBK C9 C10 SING N N 9 A1EBK C10 C11 SING N N 10 A1EBK C11 C12 DOUB Y N 11 A1EBK C12 C13 SING Y N 12 A1EBK C13 C14 DOUB Y N 13 A1EBK C14 N15 SING N N 14 A1EBK N15 C16 SING N N 15 A1EBK C16 N17 SING N N 16 A1EBK N17 C18 SING N N 17 A1EBK C18 C19 SING N N 18 A1EBK C19 C20 DOUB Y N 19 A1EBK C20 C21 SING Y N 20 A1EBK C21 C22 DOUB Y N 21 A1EBK C22 O23 SING N N 22 A1EBK O23 C24 SING N N 23 A1EBK C24 F25 SING N N 24 A1EBK C24 F26 SING N N 25 A1EBK C24 F27 SING N N 26 A1EBK C22 C28 SING Y N 27 A1EBK C28 C29 DOUB Y N 28 A1EBK C16 O30 DOUB N N 29 A1EBK C14 C31 SING Y N 30 A1EBK C11 C32 SING Y N 31 A1EBK C32 C33 SING N N 32 A1EBK C9 N34 SING N N 33 A1EBK N34 C35 SING N N 34 A1EBK C35 C36 SING N N 35 A1EBK C8 C37 SING Y N 36 A1EBK C37 C38 DOUB Y N 37 A1EBK C38 C3 SING Y N 38 A1EBK C29 C19 SING Y N 39 A1EBK C32 C31 DOUB Y N 40 A1EBK N34 C33 SING N N 41 A1EBK C37 C36 SING N N 42 A1EBK C1 H1C SING N N 43 A1EBK C1 H1B SING N N 44 A1EBK C1 H1A SING N N 45 A1EBK C6 H6B SING N N 46 A1EBK C6 H6A SING N N 47 A1EBK C6 H6C SING N N 48 A1EBK C7 H7 SING N N 49 A1EBK C10 H10B SING N N 50 A1EBK C10 H10A SING N N 51 A1EBK C12 H12 SING N N 52 A1EBK C13 H13 SING N N 53 A1EBK C18 H18B SING N N 54 A1EBK C18 H18A SING N N 55 A1EBK C20 H20 SING N N 56 A1EBK C21 H21 SING N N 57 A1EBK C28 H28 SING N N 58 A1EBK C29 H29 SING N N 59 A1EBK C31 H31 SING N N 60 A1EBK C33 H33B SING N N 61 A1EBK C33 H33A SING N N 62 A1EBK C35 H35B SING N N 63 A1EBK C35 H35A SING N N 64 A1EBK C36 H36A SING N N 65 A1EBK C36 H36B SING N N 66 A1EBK C38 H38 SING N N 67 A1EBK C9 H9 SING N N 68 A1EBK N15 H15 SING N N 69 A1EBK N17 H17 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EBK InChI InChI 1.06 "InChI=1S/C28H28F3N3O4/c1-36-25-13-19-9-10-34-16-20-11-21(6-5-18(20)12-24(34)23(19)14-26(25)37-2)33-27(35)32-15-17-3-7-22(8-4-17)38-28(29,30)31/h3-8,11,13-14,24H,9-10,12,15-16H2,1-2H3,(H2,32,33,35)/t24-/m1/s1" A1EBK InChIKey InChI 1.06 QLVMEJODLSQJTN-XMMPIXPASA-N A1EBK SMILES_CANONICAL CACTVS 3.385 "COc1cc2CCN3Cc4cc(NC(=O)NCc5ccc(OC(F)(F)F)cc5)ccc4C[C@@H]3c2cc1OC" A1EBK SMILES CACTVS 3.385 "COc1cc2CCN3Cc4cc(NC(=O)NCc5ccc(OC(F)(F)F)cc5)ccc4C[CH]3c2cc1OC" A1EBK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc2c(cc1OC)[C@H]3Cc4ccc(cc4CN3CC2)NC(=O)NCc5ccc(cc5)OC(F)(F)F" A1EBK SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc2c(cc1OC)C3Cc4ccc(cc4CN3CC2)NC(=O)NCc5ccc(cc5)OC(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1EBK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(13~{a}~{R})-2,3-dimethoxy-6,8,13,13~{a}-tetrahydro-5~{H}-isoquinolino[3,2-a]isoquinolin-10-yl]-3-[[4-(trifluoromethyloxy)phenyl]methyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EBK "Create component" 2024-09-06 PDBC A1EBK "Initial release" 2025-09-10 RCSB #