data_A1ECU # _chem_comp.id A1ECU _chem_comp.name "2,2-bis(chloranyl)-~{N}-[5-[[5-chloranyl-4-[(2-dimethylphosphorylphenyl)amino]pyrimidin-2-yl]amino]-4-methoxy-2-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H40 Cl3 N8 O3 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-01 _chem_comp.pdbx_modified_date 2025-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 710.034 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ECU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9JQ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ECU N1 N1 N 0 1 N N N N N N -0.258 51.591 -22.922 6.076 0.267 0.067 N1 A1ECU 1 A1ECU C2 C1 C 0 1 Y N N N N N -2.014 49.797 -22.785 7.740 -1.427 -0.367 C2 A1ECU 2 A1ECU O2 O1 O 0 1 N N N N N N 2.982 53.514 -16.272 0.042 -3.272 -0.913 O2 A1ECU 3 A1ECU N3 N2 N 0 1 N N N N N N 1.888 53.492 -18.873 1.665 -1.022 -0.891 N3 A1ECU 4 A1ECU C4 C2 C 0 1 Y N N N N N 0.591 52.576 -22.218 4.711 0.443 0.240 C4 A1ECU 5 A1ECU N4 N3 N 0 1 N N N N N N -1.222 49.870 -17.169 -2.226 1.696 0.020 N4 A1ECU 6 A1ECU C5 C3 C 0 1 Y N N N N N 1.166 53.560 -22.962 4.226 1.454 1.073 C5 A1ECU 7 A1ECU C6 C4 C 0 1 Y N N N N N 1.962 54.494 -22.331 2.858 1.593 1.214 C6 A1ECU 8 A1ECU N2 N4 N 0 1 Y N N N N N 2.158 54.414 -21.006 2.052 0.769 0.560 N2 A1ECU 9 A1ECU C7 C5 C 0 1 Y N N N N N 1.597 53.470 -20.304 2.540 -0.181 -0.224 C7 A1ECU 10 A1ECU N6 N5 N 0 1 N N N N N N -0.119 51.867 -10.787 -7.971 -1.220 0.484 N6 A1ECU 11 A1ECU N7 N6 N 0 1 N N N N N N -0.921 54.631 -10.888 -10.723 -1.862 0.827 N7 A1ECU 12 A1ECU C8 C6 C 0 1 Y N N N N N 1.341 52.581 -17.844 0.283 -0.912 -0.672 C8 A1ECU 13 A1ECU C1 C7 C 0 1 N N N N N N -1.462 50.127 -25.647 10.013 -2.066 1.434 C1 A1ECU 14 A1ECU C10 C8 C 0 1 Y N N N N N -0.150 50.877 -16.991 -1.651 0.439 -0.219 C10 A1ECU 15 A1ECU C11 C9 C 0 1 N N N N N N -2.657 50.149 -17.019 -1.718 2.794 -0.575 C11 A1ECU 16 A1ECU C12 C10 C 0 1 N N N N N N -3.643 48.935 -17.261 -2.246 4.159 -0.215 C12 A1ECU 17 A1ECU C13 C11 C 0 1 Y N N N N N 0.444 50.951 -15.747 -2.451 -0.701 -0.240 C13 A1ECU 18 A1ECU C14 C12 C 0 1 N N N N N N -1.382 50.220 -14.094 -4.241 -1.374 1.154 C14 A1ECU 19 A1ECU C15 C13 C 0 1 N N N N N N -1.345 50.424 -12.549 -5.720 -1.117 1.448 C15 A1ECU 20 A1ECU C16 C14 C 0 1 N N N N N N -0.170 51.401 -12.070 -6.555 -1.518 0.229 C16 A1ECU 21 A1ECU C17 C15 C 0 1 N N N N N N 0.762 52.881 -10.775 -8.803 -1.593 -0.668 C17 A1ECU 22 A1ECU C18 C16 C 0 1 N N N N N N 0.305 54.293 -11.225 -10.256 -1.194 -0.395 C18 A1ECU 23 A1ECU C19 C17 C 0 1 N N N N N N -0.890 55.278 -9.709 -12.139 -1.564 1.082 C19 A1ECU 24 A1ECU C20 C18 C 0 1 N N N N N N -1.804 53.659 -10.860 -9.891 -1.489 1.979 C20 A1ECU 25 A1ECU C21 C19 C 0 1 N N N N N N -1.322 52.242 -10.419 -8.438 -1.888 1.707 C21 A1ECU 26 A1ECU C22 C20 C 0 1 N N N N N N 1.162 50.581 -12.454 -6.077 -0.726 -0.990 C22 A1ECU 27 A1ECU C23 C21 C 0 1 N N N N N N 1.137 49.718 -13.735 -4.587 -0.994 -1.214 C23 A1ECU 28 A1ECU C24 C22 C 0 1 Y N N N N N 1.474 51.844 -15.524 -1.881 -1.945 -0.471 C24 A1ECU 29 A1ECU C25 C23 C 0 1 Y N N N N N 1.916 52.660 -16.571 -0.517 -2.052 -0.687 C25 A1ECU 30 A1ECU C26 C24 C 0 1 N N N N N N 4.100 52.724 -16.368 -0.838 -4.398 -0.914 C26 A1ECU 31 A1ECU C27 C25 C 0 1 Y N N N N N -0.277 49.892 -21.061 5.835 -1.221 -1.819 C27 A1ECU 32 A1ECU C28 C26 C 0 1 Y N N N N N -0.854 48.789 -20.445 6.307 -2.270 -2.582 C28 A1ECU 33 A1ECU C29 C27 C 0 1 Y N N N N N -2.010 48.192 -21.006 7.491 -2.898 -2.241 C29 A1ECU 34 A1ECU C3 C28 C 0 1 Y N N N N N -0.853 50.408 -22.237 6.551 -0.795 -0.707 C3 A1ECU 35 A1ECU C30 C29 C 0 1 Y N N N N N -2.573 48.699 -22.177 8.207 -2.477 -1.135 C30 A1ECU 36 A1ECU C31 C30 C 0 1 N N N N N N -4.431 49.736 -24.681 9.411 0.765 0.737 C31 A1ECU 37 A1ECU C9 C31 C 0 1 Y N N N N N 0.296 51.692 -18.072 -0.285 0.331 -0.435 C9 A1ECU 38 A1ECU N5 N7 N 0 1 N N N N N N 0.004 50.075 -14.601 -3.831 -0.593 -0.021 N5 A1ECU 39 A1ECU N8 N8 N 0 1 Y N N N N N 0.816 52.555 -20.907 3.844 -0.344 -0.390 N8 A1ECU 40 A1ECU O1 O2 O 0 1 N N N N N N -3.010 51.250 -16.757 -0.836 2.683 -1.401 O1 A1ECU 41 A1ECU O3 O3 O 0 1 N N N N N N -2.867 51.905 -24.142 7.781 -0.774 2.249 O3 A1ECU 42 A1ECU P1 P1 P 0 1 N N N N N N -2.735 50.473 -24.307 8.683 -0.871 1.079 P1 A1ECU 43 A1ECU CL1 CL1 CL 0 0 N N N N N N 0.860 53.635 -24.705 5.317 2.512 1.913 CL1 A1ECU 44 A1ECU CL2 CL2 CL 0 0 N N N N N N -2.840 47.316 -17.201 -1.479 5.399 -1.276 CL2 A1ECU 45 A1ECU CL3 CL3 CL 0 0 N N N N N N -4.384 49.255 -18.880 -4.034 4.192 -0.447 CL3 A1ECU 46 A1ECU H4 H1 H 0 1 N N N N N N -0.440 51.724 -23.896 6.700 0.883 0.481 H4 A1ECU 47 A1ECU H6 H2 H 0 1 N N N N N N 2.523 54.196 -18.556 2.006 -1.686 -1.509 H6 A1ECU 48 A1ECU H8 H3 H 0 1 N N N N N N -0.951 48.937 -17.407 -2.989 1.776 0.613 H8 A1ECU 49 A1ECU H5 H4 H 0 1 N N N N N N 2.425 55.286 -22.901 2.450 2.364 1.851 H5 A1ECU 50 A1ECU H2 H7 H 0 1 N N N N N N -1.829 50.511 -26.610 10.677 -2.137 0.573 H2 A1ECU 51 A1ECU H1 H8 H 0 1 N N N N N N -0.515 50.625 -25.391 10.579 -1.731 2.303 H1 A1ECU 52 A1ECU H3 H9 H 0 1 N N N N N N -1.296 49.042 -25.724 9.577 -3.044 1.639 H3 A1ECU 53 A1ECU H9 H10 H 0 1 N N N N N N -4.450 48.939 -16.514 -2.011 4.376 0.827 H9 A1ECU 54 A1ECU H10 H11 H 0 1 N N N N N N -1.858 51.091 -14.569 -3.642 -1.076 2.015 H10 A1ECU 55 A1ECU H11 H12 H 0 1 N N N N N N -1.957 49.313 -14.331 -4.089 -2.435 0.956 H11 A1ECU 56 A1ECU H12 H13 H 0 1 N N N N N N -2.307 50.851 -12.230 -6.028 -1.709 2.311 H12 A1ECU 57 A1ECU H13 H14 H 0 1 N N N N N N -1.202 49.444 -12.070 -5.871 -0.058 1.660 H13 A1ECU 58 A1ECU H14 H15 H 0 1 N N N N N N -0.198 52.261 -12.755 -6.436 -2.585 0.041 H14 A1ECU 59 A1ECU H15 H16 H 0 1 N N N N N N 1.126 52.977 -9.741 -8.445 -1.076 -1.558 H15 A1ECU 60 A1ECU H16 H17 H 0 1 N N N N N N 1.595 52.589 -11.432 -8.745 -2.670 -0.825 H16 A1ECU 61 A1ECU H18 H18 H 0 1 N N N N N N 0.992 55.028 -10.781 -10.880 -1.496 -1.236 H18 A1ECU 62 A1ECU H17 H19 H 0 1 N N N N N N 0.379 54.338 -12.322 -10.318 -0.114 -0.266 H17 A1ECU 63 A1ECU H19 H20 H 0 1 N N N N N N -1.912 55.564 -9.420 -12.257 -0.496 1.268 H19 A1ECU 64 A1ECU H21 H21 H 0 1 N N N N N N -0.463 54.618 -8.940 -12.732 -1.850 0.214 H21 A1ECU 65 A1ECU H20 H22 H 0 1 N N N N N N -0.269 56.181 -9.803 -12.477 -2.124 1.954 H20 A1ECU 66 A1ECU H22 H23 H 0 1 N N N N N N -2.603 53.963 -10.167 -9.948 -0.412 2.136 H22 A1ECU 67 A1ECU H23 H24 H 0 1 N N N N N N -2.216 53.563 -11.875 -10.249 -2.006 2.870 H23 A1ECU 68 A1ECU H24 H25 H 0 1 N N N N N N -2.034 51.510 -10.828 -8.376 -2.968 1.577 H24 A1ECU 69 A1ECU H25 H26 H 0 1 N N N N N N -1.355 52.211 -9.320 -7.814 -1.586 2.547 H25 A1ECU 70 A1ECU H26 H27 H 0 1 N N N N N N 1.975 51.313 -12.568 -6.639 -1.038 -1.871 H26 A1ECU 71 A1ECU H27 H28 H 0 1 N N N N N N 1.388 49.910 -11.612 -6.233 0.339 -0.817 H27 A1ECU 72 A1ECU H29 H29 H 0 1 N N N N N N 1.050 48.659 -13.451 -4.433 -2.057 -1.401 H29 A1ECU 73 A1ECU H28 H30 H 0 1 N N N N N N 2.074 49.874 -14.290 -4.239 -0.420 -2.073 H28 A1ECU 74 A1ECU H30 H31 H 0 1 N N N N N N 1.934 51.912 -14.549 -2.501 -2.829 -0.487 H30 A1ECU 75 A1ECU H31 H32 H 0 1 N N N N N N 4.994 53.325 -16.145 -0.265 -5.306 -1.106 H31 A1ECU 76 A1ECU H32 H33 H 0 1 N N N N N N 4.026 51.896 -15.648 -1.329 -4.477 0.056 H32 A1ECU 77 A1ECU H33 H34 H 0 1 N N N N N N 4.176 52.318 -17.388 -1.590 -4.271 -1.693 H33 A1ECU 78 A1ECU H34 H35 H 0 1 N N N N N N 0.606 50.350 -20.641 4.910 -0.731 -2.086 H34 A1ECU 79 A1ECU H35 H36 H 0 1 N N N N N N -0.422 48.387 -19.540 5.750 -2.602 -3.446 H35 A1ECU 80 A1ECU H36 H37 H 0 1 N N N N N N -2.459 47.337 -20.523 7.858 -3.719 -2.839 H36 A1ECU 81 A1ECU H37 H38 H 0 1 N N N N N N -3.446 48.230 -22.605 9.131 -2.968 -0.871 H37 A1ECU 82 A1ECU H40 H39 H 0 1 N N N N N N -5.124 49.975 -23.861 10.075 0.694 -0.125 H40 A1ECU 83 A1ECU H39 H40 H 0 1 N N N N N N -4.815 50.159 -25.621 8.616 1.480 0.524 H39 A1ECU 84 A1ECU H38 H41 H 0 1 N N N N N N -4.342 48.644 -24.780 9.978 1.100 1.606 H38 A1ECU 85 A1ECU H7 H42 H 0 1 N N N N N N -0.167 51.621 -19.045 0.336 1.214 -0.419 H7 A1ECU 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ECU C1 P1 SING N N 1 A1ECU P1 C2 SING N N 2 A1ECU P1 C31 SING N N 3 A1ECU P1 O3 DOUB N N 4 A1ECU C2 C3 DOUB Y N 5 A1ECU C2 C30 SING Y N 6 A1ECU C3 N1 SING N N 7 A1ECU C3 C27 SING Y N 8 A1ECU N1 C4 SING N N 9 A1ECU C4 C5 DOUB Y N 10 A1ECU C4 N8 SING Y N 11 A1ECU C5 CL1 SING N N 12 A1ECU C5 C6 SING Y N 13 A1ECU C6 N2 DOUB Y N 14 A1ECU N2 C7 SING Y N 15 A1ECU C7 N3 SING N N 16 A1ECU C7 N8 DOUB Y N 17 A1ECU N3 C8 SING N N 18 A1ECU C8 C9 DOUB Y N 19 A1ECU C8 C25 SING Y N 20 A1ECU C9 C10 SING Y N 21 A1ECU C10 N4 SING N N 22 A1ECU C10 C13 DOUB Y N 23 A1ECU N4 C11 SING N N 24 A1ECU C11 C12 SING N N 25 A1ECU C11 O1 DOUB N N 26 A1ECU C12 CL2 SING N N 27 A1ECU C12 CL3 SING N N 28 A1ECU C13 N5 SING N N 29 A1ECU C13 C24 SING Y N 30 A1ECU N5 C14 SING N N 31 A1ECU N5 C23 SING N N 32 A1ECU C14 C15 SING N N 33 A1ECU C15 C16 SING N N 34 A1ECU C16 N6 SING N N 35 A1ECU C16 C22 SING N N 36 A1ECU N6 C17 SING N N 37 A1ECU N6 C21 SING N N 38 A1ECU C17 C18 SING N N 39 A1ECU C18 N7 SING N N 40 A1ECU N7 C19 SING N N 41 A1ECU N7 C20 SING N N 42 A1ECU C20 C21 SING N N 43 A1ECU C22 C23 SING N N 44 A1ECU C24 C25 DOUB Y N 45 A1ECU C25 O2 SING N N 46 A1ECU O2 C26 SING N N 47 A1ECU C27 C28 DOUB Y N 48 A1ECU C28 C29 SING Y N 49 A1ECU C29 C30 DOUB Y N 50 A1ECU N1 H4 SING N N 51 A1ECU N3 H6 SING N N 52 A1ECU N4 H8 SING N N 53 A1ECU C6 H5 SING N N 54 A1ECU C1 H2 SING N N 55 A1ECU C1 H1 SING N N 56 A1ECU C1 H3 SING N N 57 A1ECU C12 H9 SING N N 58 A1ECU C14 H10 SING N N 59 A1ECU C14 H11 SING N N 60 A1ECU C15 H12 SING N N 61 A1ECU C15 H13 SING N N 62 A1ECU C16 H14 SING N N 63 A1ECU C17 H15 SING N N 64 A1ECU C17 H16 SING N N 65 A1ECU C18 H18 SING N N 66 A1ECU C18 H17 SING N N 67 A1ECU C19 H19 SING N N 68 A1ECU C19 H21 SING N N 69 A1ECU C19 H20 SING N N 70 A1ECU C20 H22 SING N N 71 A1ECU C20 H23 SING N N 72 A1ECU C21 H24 SING N N 73 A1ECU C21 H25 SING N N 74 A1ECU C22 H26 SING N N 75 A1ECU C22 H27 SING N N 76 A1ECU C23 H29 SING N N 77 A1ECU C23 H28 SING N N 78 A1ECU C24 H30 SING N N 79 A1ECU C26 H31 SING N N 80 A1ECU C26 H32 SING N N 81 A1ECU C26 H33 SING N N 82 A1ECU C27 H34 SING N N 83 A1ECU C28 H35 SING N N 84 A1ECU C29 H36 SING N N 85 A1ECU C30 H37 SING N N 86 A1ECU C31 H40 SING N N 87 A1ECU C31 H39 SING N N 88 A1ECU C31 H38 SING N N 89 A1ECU C9 H7 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ECU InChI InChI 1.06 "InChI=1S/C31H40Cl3N8O3P/c1-40-13-15-41(16-14-40)20-9-11-42(12-10-20)25-18-26(45-2)24(17-23(25)37-30(43)28(33)34)38-31-35-19-21(32)29(39-31)36-22-7-5-6-8-27(22)46(3,4)44/h5-8,17-20,28H,9-16H2,1-4H3,(H,37,43)(H2,35,36,38,39)" A1ECU InChIKey InChI 1.06 WKUTZQYPDRJNAE-UHFFFAOYSA-N A1ECU SMILES_CANONICAL CACTVS 3.385 "COc1cc(N2CCC(CC2)N3CCN(C)CC3)c(NC(=O)C(Cl)Cl)cc1Nc4ncc(Cl)c(Nc5ccccc5[P](C)(C)=O)n4" A1ECU SMILES CACTVS 3.385 "COc1cc(N2CCC(CC2)N3CCN(C)CC3)c(NC(=O)C(Cl)Cl)cc1Nc4ncc(Cl)c(Nc5ccccc5[P](C)(C)=O)n4" A1ECU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C2CCN(CC2)c3cc(c(cc3NC(=O)C(Cl)Cl)Nc4ncc(c(n4)Nc5ccccc5P(=O)(C)C)Cl)OC" A1ECU SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C2CCN(CC2)c3cc(c(cc3NC(=O)C(Cl)Cl)Nc4ncc(c(n4)Nc5ccccc5P(=O)(C)C)Cl)OC" # _pdbx_chem_comp_identifier.comp_id A1ECU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2,2-bis(chloranyl)-~{N}-[5-[[5-chloranyl-4-[(2-dimethylphosphorylphenyl)amino]pyrimidin-2-yl]amino]-4-methoxy-2-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ECU "Create component" 2024-10-01 PDBC A1ECU "Initial release" 2025-07-02 RCSB #