data_A1EEG # _chem_comp.id A1EEG _chem_comp.name "(6~{S},9~{a}~{S})-6-(2-methylpropyl)-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-~{N}-(phenylmethyl)-3,6,9,9~{a}-tetrahydro-2~{H}-pyrazino[1,2-a]pyrimidine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H34 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-20 _chem_comp.pdbx_modified_date 2025-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.616 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EEG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9K2K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EEG C10 C1 C 0 1 N N N N N N 146.076 12.882 7.365 -1.515 4.066 0.766 C10 A1EEG 1 A1EEG C13 C2 C 0 1 N N S N N N 142.542 12.871 8.577 -0.602 0.604 -0.680 C13 A1EEG 2 A1EEG C17 C3 C 0 1 Y N N N N N 142.212 12.999 12.783 3.274 -0.896 1.500 C17 A1EEG 3 A1EEG C20 C4 C 0 1 Y N N N N N 145.498 14.487 13.042 3.269 -3.085 -1.463 C20 A1EEG 4 A1EEG C21 C5 C 0 1 Y N N N N N 145.189 15.692 13.599 4.627 -3.107 -1.778 C21 A1EEG 5 A1EEG C22 C6 C 0 1 Y N N N N N 143.883 16.009 13.892 5.531 -2.415 -1.032 C22 A1EEG 6 A1EEG C24 C7 C 0 1 Y N N N N N 141.597 15.402 13.898 5.996 -0.941 0.868 C24 A1EEG 7 A1EEG C26 C8 C 0 1 Y N N N N N 140.905 13.305 13.084 4.178 -0.205 2.246 C26 A1EEG 8 A1EEG O01 O1 O 0 1 N N N N N N 142.231 15.424 7.376 -2.402 -0.984 -3.291 O01 A1EEG 9 A1EEG C02 C9 C 0 1 N N N N N N 141.468 14.591 7.030 -2.093 -0.600 -2.179 C02 A1EEG 10 A1EEG N03 N1 N 0 1 N N N N N N 141.535 13.271 7.606 -1.045 0.232 -2.021 N03 A1EEG 11 A1EEG C04 C10 C 0 1 N N N N N N 140.705 12.185 7.212 -0.347 0.767 -3.196 C04 A1EEG 12 A1EEG C05 C11 C 0 1 N N N N N N 141.540 11.290 6.386 -0.382 2.298 -3.106 C05 A1EEG 13 A1EEG C06 C12 C 0 1 N N N N N N 142.887 10.945 7.022 0.101 2.718 -1.746 C06 A1EEG 14 A1EEG N07 N2 N 0 1 N N N N N N 143.333 11.796 8.095 -0.030 1.952 -0.672 N07 A1EEG 15 A1EEG C08 C13 C 0 1 N N S N N N 144.511 11.619 8.844 0.401 2.467 0.641 C08 A1EEG 16 A1EEG C09 C14 C 0 1 N N N N N N 145.405 12.832 8.731 -0.824 2.887 1.455 C09 A1EEG 17 A1EEG C11 C15 C 0 1 N N N N N N 146.769 14.213 7.143 -2.808 4.405 1.510 C11 A1EEG 18 A1EEG C12 C16 C 0 1 N N N N N N 147.034 11.721 7.147 -0.584 5.280 0.779 C12 A1EEG 19 A1EEG C14 C17 C 0 1 N N N N N N 141.934 12.435 9.884 0.470 -0.380 -0.204 C14 A1EEG 20 A1EEG N15 N3 N 0 1 N N N N N N 142.847 11.858 10.740 1.128 0.118 0.997 N15 A1EEG 21 A1EEG C16 C18 C 0 1 N N N N N N 142.539 11.663 12.155 1.810 -0.855 1.854 C16 A1EEG 22 A1EEG C18 C19 C 0 1 Y N N N N N 143.208 13.896 13.061 3.712 -1.645 0.395 C18 A1EEG 23 A1EEG C19 C20 C 0 1 Y N N N N N 144.506 13.584 12.763 2.809 -2.371 -0.400 C19 A1EEG 24 A1EEG C23 C21 C 0 1 Y N N N N N 142.897 15.102 13.618 5.093 -1.667 0.074 C23 A1EEG 25 A1EEG C25 C22 C 0 1 Y N N N N N 140.592 14.516 13.634 5.535 -0.226 1.931 C25 A1EEG 26 A1EEG C27 C23 C 0 1 N N N N N N 144.108 11.456 10.285 1.141 1.379 1.370 C27 A1EEG 27 A1EEG O28 O2 O 0 1 N N N N N N 144.881 10.951 11.024 1.778 1.675 2.358 O28 A1EEG 28 A1EEG O29 O3 O 0 1 N N N N N N 143.596 10.047 6.677 0.638 3.800 -1.630 O29 A1EEG 29 A1EEG N30 N4 N 0 1 N N N N N N 140.496 14.951 6.064 -2.799 -1.006 -1.106 N30 A1EEG 30 A1EEG C31 C24 C 0 1 N N N N N N 140.485 16.294 5.516 -3.869 -1.995 -1.264 C31 A1EEG 31 A1EEG C32 C25 C 0 1 Y N N N N N 139.379 17.134 6.072 -4.496 -2.275 0.078 C32 A1EEG 32 A1EEG C33 C26 C 0 1 Y N N N N N 138.366 17.518 5.244 -3.992 -3.282 0.879 C33 A1EEG 33 A1EEG C34 C27 C 0 1 Y N N N N N 137.335 18.274 5.722 -4.568 -3.539 2.109 C34 A1EEG 34 A1EEG C35 C28 C 0 1 Y N N N N N 137.358 18.642 7.037 -5.646 -2.789 2.539 C35 A1EEG 35 A1EEG C36 C29 C 0 1 Y N N N N N 138.391 18.257 7.856 -6.149 -1.781 1.737 C36 A1EEG 36 A1EEG C37 C30 C 0 1 Y N N N N N 139.409 17.499 7.378 -5.571 -1.521 0.509 C37 A1EEG 37 A1EEG H1 H1 H 0 1 N N N N N N 145.282 12.796 6.609 -1.748 3.798 -0.264 H1 A1EEG 38 A1EEG H2 H2 H 0 1 N N N N N N 143.194 13.733 8.779 -1.451 0.569 0.003 H2 A1EEG 39 A1EEG H3 H3 H 0 1 N N N N N N 146.527 14.244 12.820 2.573 -3.641 -2.072 H3 A1EEG 40 A1EEG H4 H4 H 0 1 N N N N N N 145.974 16.402 13.812 4.966 -3.681 -2.628 H4 A1EEG 41 A1EEG H5 H5 H 0 1 N N N N N N 143.639 16.964 14.334 6.580 -2.442 -1.288 H5 A1EEG 42 A1EEG H6 H6 H 0 1 N N N N N N 141.357 16.359 14.337 7.051 -0.949 0.635 H6 A1EEG 43 A1EEG H7 H7 H 0 1 N N N N N N 140.124 12.586 12.885 3.839 0.370 3.096 H7 A1EEG 44 A1EEG H8 H8 H 0 1 N N N N N N 139.851 12.554 6.626 0.687 0.421 -3.201 H8 A1EEG 45 A1EEG H9 H9 H 0 1 N N N N N N 140.337 11.648 8.099 -0.849 0.438 -4.106 H9 A1EEG 46 A1EEG H10 H10 H 0 1 N N N N N N 141.728 11.783 5.421 0.263 2.729 -3.871 H10 A1EEG 47 A1EEG H11 H11 H 0 1 N N N N N N 140.986 10.355 6.218 -1.406 2.643 -3.252 H11 A1EEG 48 A1EEG H12 H12 H 0 1 N N N N N N 145.060 10.726 8.511 1.059 3.325 0.499 H12 A1EEG 49 A1EEG H13 H13 H 0 1 N N N N N N 146.179 12.784 9.512 -0.511 3.184 2.456 H13 A1EEG 50 A1EEG H14 H14 H 0 1 N N N N N N 144.800 13.740 8.869 -1.518 2.050 1.525 H14 A1EEG 51 A1EEG H15 H15 H 0 1 N N N N N N 146.053 15.032 7.307 -2.574 4.673 2.541 H15 A1EEG 52 A1EEG H16 H16 H 0 1 N N N N N N 147.607 14.312 7.848 -3.299 5.245 1.019 H16 A1EEG 53 A1EEG H17 H17 H 0 1 N N N N N N 147.150 14.261 6.112 -3.470 3.540 1.501 H17 A1EEG 54 A1EEG H18 H18 H 0 1 N N N N N N 146.504 10.772 7.315 0.337 5.038 0.249 H18 A1EEG 55 A1EEG H19 H19 H 0 1 N N N N N N 147.417 11.750 6.116 -1.076 6.120 0.288 H19 A1EEG 56 A1EEG H20 H20 H 0 1 N N N N N N 147.874 11.802 7.852 -0.351 5.548 1.810 H20 A1EEG 57 A1EEG H21 H21 H 0 1 N N N N N N 141.499 13.316 10.379 0.005 -1.342 0.013 H21 A1EEG 58 A1EEG H22 H22 H 0 1 N N N N N N 141.140 11.703 9.674 1.212 -0.511 -0.992 H22 A1EEG 59 A1EEG H23 H23 H 0 1 N N N N N N 141.675 10.989 12.254 1.372 -1.841 1.704 H23 A1EEG 60 A1EEG H24 H24 H 0 1 N N N N N N 143.409 11.221 12.663 1.696 -0.561 2.898 H24 A1EEG 61 A1EEG H25 H25 H 0 1 N N N N N N 144.747 12.633 12.311 1.754 -2.363 -0.168 H25 A1EEG 62 A1EEG H26 H26 H 0 1 N N N N N N 139.566 14.769 13.856 6.232 0.331 2.539 H26 A1EEG 63 A1EEG H27 H27 H 0 1 N N N N N N 139.819 14.281 5.761 -2.599 -0.645 -0.228 H27 A1EEG 64 A1EEG H28 H28 H 0 1 N N N N N N 141.445 16.777 5.749 -4.626 -1.605 -1.944 H28 A1EEG 65 A1EEG H29 H29 H 0 1 N N N N N N 140.363 16.228 4.425 -3.454 -2.917 -1.671 H29 A1EEG 66 A1EEG H30 H30 H 0 1 N N N N N N 138.379 17.223 4.205 -3.149 -3.869 0.544 H30 A1EEG 67 A1EEG H31 H31 H 0 1 N N N N N N 136.522 18.573 5.077 -4.174 -4.327 2.735 H31 A1EEG 68 A1EEG H32 H32 H 0 1 N N N N N N 136.555 19.243 7.437 -6.096 -2.991 3.500 H32 A1EEG 69 A1EEG H33 H33 H 0 1 N N N N N N 138.393 18.561 8.892 -6.993 -1.195 2.072 H33 A1EEG 70 A1EEG H34 H34 H 0 1 N N N N N N 140.222 17.194 8.020 -5.962 -0.731 -0.115 H34 A1EEG 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EEG C33 C34 DOUB Y N 1 A1EEG C33 C32 SING Y N 2 A1EEG C31 N30 SING N N 3 A1EEG C31 C32 SING N N 4 A1EEG C34 C35 SING Y N 5 A1EEG N30 C02 SING N N 6 A1EEG C32 C37 DOUB Y N 7 A1EEG C05 C06 SING N N 8 A1EEG C05 C04 SING N N 9 A1EEG O29 C06 DOUB N N 10 A1EEG C06 N07 SING N N 11 A1EEG C02 O01 DOUB N N 12 A1EEG C02 N03 SING N N 13 A1EEG C35 C36 DOUB Y N 14 A1EEG C11 C10 SING N N 15 A1EEG C12 C10 SING N N 16 A1EEG C04 N03 SING N N 17 A1EEG C10 C09 SING N N 18 A1EEG C37 C36 SING Y N 19 A1EEG N03 C13 SING N N 20 A1EEG N07 C13 SING N N 21 A1EEG N07 C08 SING N N 22 A1EEG C13 C14 SING N N 23 A1EEG C09 C08 SING N N 24 A1EEG C08 C27 SING N N 25 A1EEG C14 N15 SING N N 26 A1EEG C27 N15 SING N N 27 A1EEG C27 O28 DOUB N N 28 A1EEG N15 C16 SING N N 29 A1EEG C16 C17 SING N N 30 A1EEG C19 C20 DOUB Y N 31 A1EEG C19 C18 SING Y N 32 A1EEG C17 C18 DOUB Y N 33 A1EEG C17 C26 SING Y N 34 A1EEG C20 C21 SING Y N 35 A1EEG C18 C23 SING Y N 36 A1EEG C26 C25 DOUB Y N 37 A1EEG C21 C22 DOUB Y N 38 A1EEG C23 C22 SING Y N 39 A1EEG C23 C24 DOUB Y N 40 A1EEG C25 C24 SING Y N 41 A1EEG C10 H1 SING N N 42 A1EEG C13 H2 SING N N 43 A1EEG C20 H3 SING N N 44 A1EEG C21 H4 SING N N 45 A1EEG C22 H5 SING N N 46 A1EEG C24 H6 SING N N 47 A1EEG C26 H7 SING N N 48 A1EEG C04 H8 SING N N 49 A1EEG C04 H9 SING N N 50 A1EEG C05 H10 SING N N 51 A1EEG C05 H11 SING N N 52 A1EEG C08 H12 SING N N 53 A1EEG C09 H13 SING N N 54 A1EEG C09 H14 SING N N 55 A1EEG C11 H15 SING N N 56 A1EEG C11 H16 SING N N 57 A1EEG C11 H17 SING N N 58 A1EEG C12 H18 SING N N 59 A1EEG C12 H19 SING N N 60 A1EEG C12 H20 SING N N 61 A1EEG C14 H21 SING N N 62 A1EEG C14 H22 SING N N 63 A1EEG C16 H23 SING N N 64 A1EEG C16 H24 SING N N 65 A1EEG C19 H25 SING N N 66 A1EEG C25 H26 SING N N 67 A1EEG N30 H27 SING N N 68 A1EEG C31 H28 SING N N 69 A1EEG C31 H29 SING N N 70 A1EEG C33 H30 SING N N 71 A1EEG C34 H31 SING N N 72 A1EEG C35 H32 SING N N 73 A1EEG C36 H33 SING N N 74 A1EEG C37 H34 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EEG InChI InChI 1.06 "InChI=1S/C30H34N4O3/c1-21(2)17-26-29(36)32(19-24-13-8-12-23-11-6-7-14-25(23)24)20-27-33(16-15-28(35)34(26)27)30(37)31-18-22-9-4-3-5-10-22/h3-14,21,26-27H,15-20H2,1-2H3,(H,31,37)/t26-,27+/m0/s1" A1EEG InChIKey InChI 1.06 HABVPTFNPWNZNJ-RRPNLBNLSA-N A1EEG SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@@H]1N2[C@H](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccccc5" A1EEG SMILES CACTVS 3.385 "CC(C)C[CH]1N2[CH](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccccc5" A1EEG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@H]1C(=O)N(C[C@H]2N1C(=O)CCN2C(=O)NCc3ccccc3)Cc4cccc5c4cccc5" A1EEG SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC1C(=O)N(CC2N1C(=O)CCN2C(=O)NCc3ccccc3)Cc4cccc5c4cccc5" # _pdbx_chem_comp_identifier.comp_id A1EEG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(6~{S},9~{a}~{S})-6-(2-methylpropyl)-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-~{N}-(phenylmethyl)-3,6,9,9~{a}-tetrahydro-2~{H}-pyrazino[1,2-a]pyrimidine-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EEG "Create component" 2024-10-20 PDBC A1EEG "Initial release" 2025-02-19 RCSB #