data_A1EEN # _chem_comp.id A1EEN _chem_comp.name "[4-[[2,4,6-tris(oxidanylidene)-1,3-diazinan-5-ylidene]methyl]phenyl] (2~{S})-4-methyl-2-(phenylmethoxycarbonylamino)pentanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H25 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-22 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.482 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EEN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9K3G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EEN C10 C1 C 0 1 Y N N N N N -21.217 5.365 -20.266 -8.417 4.016 0.033 C10 A1EEN 1 A1EEN O6 O1 O 0 1 N N N N N N -15.844 7.527 -29.380 8.315 0.368 1.376 O6 A1EEN 2 A1EEN C22 C2 C 0 1 N N N N N N -14.656 7.697 -29.106 7.595 0.841 0.517 C22 A1EEN 3 A1EEN N2 N1 N 0 1 N N N N N N -13.734 7.916 -30.115 8.088 1.680 -0.417 N2 A1EEN 4 A1EEN C21 C3 C 0 1 N N N N N N -12.387 8.113 -29.960 7.306 2.208 -1.368 C21 A1EEN 5 A1EEN O5 O2 O 0 1 N N N N N N -11.635 8.302 -30.911 7.814 2.957 -2.180 O5 A1EEN 6 A1EEN N1 N2 N 0 1 N N N N N N -11.933 8.082 -28.670 5.994 1.954 -1.474 N1 A1EEN 7 A1EEN C20 C4 C 0 1 N N N N N N -12.694 7.863 -27.537 5.362 1.134 -0.610 C20 A1EEN 8 A1EEN O4 O3 O 0 1 N N N N N N -12.139 7.808 -26.442 4.171 0.912 -0.717 O4 A1EEN 9 A1EEN C19 C5 C 0 1 N N N N N N -14.121 7.679 -27.754 6.157 0.508 0.465 C19 A1EEN 10 A1EEN C18 C6 C 0 1 N N N N N N -15.055 7.480 -26.632 5.582 -0.348 1.384 C18 A1EEN 11 A1EEN C17 C7 C 0 1 Y N N N N N -16.277 8.220 -26.311 4.217 -0.835 1.175 C17 A1EEN 12 A1EEN C16 C8 C 0 1 Y N N N N N -17.555 7.828 -26.736 3.835 -1.347 -0.074 C16 A1EEN 13 A1EEN C15 C9 C 0 1 Y N N N N N -18.670 8.604 -26.469 2.560 -1.799 -0.262 C15 A1EEN 14 A1EEN C23 C10 C 0 1 Y N N N N N -16.166 9.414 -25.596 3.287 -0.796 2.225 C23 A1EEN 15 A1EEN C24 C11 C 0 1 Y N N N N N -17.274 10.200 -25.333 2.016 -1.252 2.024 C24 A1EEN 16 A1EEN C14 C12 C 0 1 Y N N N N N -18.528 9.794 -25.770 1.641 -1.753 0.781 C14 A1EEN 17 A1EEN O3 O4 O 0 1 N N N N N N -19.655 10.593 -25.506 0.376 -2.204 0.588 O3 A1EEN 18 A1EEN C13 C13 C 0 1 N N N N N N -20.172 10.589 -24.251 -0.587 -1.278 0.455 C13 A1EEN 19 A1EEN O2 O5 O 0 1 N N N N N N -19.643 10.051 -23.318 -0.324 -0.108 0.599 O2 A1EEN 20 A1EEN C4 C14 C 0 1 N N S N N N -21.495 11.342 -24.202 -1.997 -1.699 0.126 C4 A1EEN 21 A1EEN C3 C15 C 0 1 N N N N N N -21.296 12.740 -23.607 -2.008 -2.439 -1.213 C3 A1EEN 22 A1EEN C1 C16 C 0 1 N N N N N N -20.348 13.677 -24.355 -3.415 -2.974 -1.488 C1 A1EEN 23 A1EEN C2 C17 C 0 1 N N N N N N -19.919 14.819 -23.440 -3.457 -3.606 -2.881 C2 A1EEN 24 A1EEN C C18 C 0 1 N N N N N N -20.987 14.202 -25.639 -3.773 -4.029 -0.439 C A1EEN 25 A1EEN N N3 N 0 1 N N N N N N -22.492 10.627 -23.416 -2.852 -0.513 0.035 N A1EEN 26 A1EEN C5 C19 C 0 1 N N N N N N -22.723 9.305 -23.537 -4.177 -0.620 0.253 C5 A1EEN 27 A1EEN O O6 O 0 1 N N N N N N -22.151 8.564 -24.309 -4.663 -1.700 0.524 O A1EEN 28 A1EEN O1 O7 O 0 1 N N N N N N -23.696 8.925 -22.678 -4.964 0.470 0.170 O1 A1EEN 29 A1EEN C6 C20 C 0 1 N N N N N N -24.064 7.514 -22.655 -6.382 0.281 0.416 C6 A1EEN 30 A1EEN C7 C21 C 0 1 Y N N N N N -23.057 6.770 -21.825 -7.096 1.600 0.280 C7 A1EEN 31 A1EEN C12 C22 C 0 1 Y N N N N N -22.677 7.244 -20.574 -7.598 1.992 -0.947 C12 A1EEN 32 A1EEN C11 C23 C 0 1 Y N N N N N -21.762 6.546 -19.803 -8.253 3.202 -1.072 C11 A1EEN 33 A1EEN C9 C24 C 0 1 Y N N N N N -21.584 4.887 -21.508 -7.921 3.622 1.262 C9 A1EEN 34 A1EEN C8 C25 C 0 1 Y N N N N N -22.494 5.586 -22.285 -7.260 2.415 1.385 C8 A1EEN 35 A1EEN H1 H1 H 0 1 N N N N N N -20.509 4.819 -19.661 -8.929 4.962 -0.064 H1 A1EEN 36 A1EEN H2 H2 H 0 1 N N N N N N -14.086 7.932 -31.051 9.031 1.907 -0.399 H2 A1EEN 37 A1EEN H3 H3 H 0 1 N N N N N N -10.954 8.233 -28.533 5.488 2.371 -2.189 H3 A1EEN 38 A1EEN H5 H5 H 0 1 N N N N N N -14.804 6.678 -25.953 6.138 -0.658 2.256 H5 A1EEN 39 A1EEN H7 H7 H 0 1 N N N N N N -17.671 6.903 -27.282 4.547 -1.383 -0.885 H7 A1EEN 40 A1EEN H8 H8 H 0 1 N N N N N N -19.646 8.284 -26.803 2.265 -2.193 -1.223 H8 A1EEN 41 A1EEN H9 H9 H 0 1 N N N N N N -15.196 9.730 -25.241 3.577 -0.407 3.190 H9 A1EEN 42 A1EEN H10 H10 H 0 1 N N N N N N -17.164 11.127 -24.789 1.299 -1.222 2.831 H10 A1EEN 43 A1EEN H11 H11 H 0 1 N N N N N N -21.864 11.458 -25.232 -2.371 -2.358 0.909 H11 A1EEN 44 A1EEN H12 H12 H 0 1 N N N N N N -20.905 12.615 -22.587 -1.718 -1.754 -2.010 H12 A1EEN 45 A1EEN H13 H13 H 0 1 N N N N N N -22.281 13.227 -23.565 -1.304 -3.270 -1.175 H13 A1EEN 46 A1EEN H14 H14 H 0 1 N N N N N N -19.450 13.104 -24.630 -4.131 -2.155 -1.438 H14 A1EEN 47 A1EEN H15 H15 H 0 1 N N N N N N -19.464 14.407 -22.527 -2.740 -4.425 -2.931 H15 A1EEN 48 A1EEN H16 H16 H 0 1 N N N N N N -19.186 15.451 -23.962 -4.459 -3.987 -3.077 H16 A1EEN 49 A1EEN H17 H17 H 0 1 N N N N N N -20.798 15.423 -23.171 -3.202 -2.854 -3.628 H17 A1EEN 50 A1EEN H18 H18 H 0 1 N N N N N N -20.282 14.872 -26.153 -3.743 -3.580 0.553 H18 A1EEN 51 A1EEN H19 H19 H 0 1 N N N N N N -21.235 13.356 -26.297 -4.775 -4.411 -0.635 H19 A1EEN 52 A1EEN H20 H20 H 0 1 N N N N N N -21.905 14.756 -25.392 -3.056 -4.849 -0.489 H20 A1EEN 53 A1EEN H21 H21 H 0 1 N N N N N N -23.033 11.144 -22.753 -2.464 0.350 -0.181 H21 A1EEN 54 A1EEN H22 H22 H 0 1 N N N N N N -25.065 7.399 -22.214 -6.785 -0.427 -0.308 H22 A1EEN 55 A1EEN H23 H23 H 0 1 N N N N N N -24.067 7.115 -23.680 -6.526 -0.109 1.424 H23 A1EEN 56 A1EEN H24 H24 H 0 1 N N N N N N -23.099 8.165 -20.200 -7.477 1.351 -1.808 H24 A1EEN 57 A1EEN H25 H25 H 0 1 N N N N N N -21.473 6.928 -18.835 -8.637 3.512 -2.033 H25 A1EEN 58 A1EEN H26 H26 H 0 1 N N N N N N -21.160 3.964 -21.876 -8.050 4.259 2.125 H26 A1EEN 59 A1EEN H27 H27 H 0 1 N N N N N N -22.768 5.206 -23.258 -6.869 2.109 2.344 H27 A1EEN 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EEN O5 C21 DOUB N N 1 A1EEN N2 C21 SING N N 2 A1EEN N2 C22 SING N N 3 A1EEN C21 N1 SING N N 4 A1EEN O6 C22 DOUB N N 5 A1EEN C22 C19 SING N N 6 A1EEN N1 C20 SING N N 7 A1EEN C19 C20 SING N N 8 A1EEN C19 C18 DOUB N N 9 A1EEN C20 O4 DOUB N N 10 A1EEN C16 C15 DOUB Y N 11 A1EEN C16 C17 SING Y N 12 A1EEN C18 C17 SING N N 13 A1EEN C15 C14 SING Y N 14 A1EEN C17 C23 DOUB Y N 15 A1EEN C14 O3 SING N N 16 A1EEN C14 C24 DOUB Y N 17 A1EEN C C1 SING N N 18 A1EEN C23 C24 SING Y N 19 A1EEN O3 C13 SING N N 20 A1EEN C1 C3 SING N N 21 A1EEN C1 C2 SING N N 22 A1EEN O C5 DOUB N N 23 A1EEN C13 C4 SING N N 24 A1EEN C13 O2 DOUB N N 25 A1EEN C4 C3 SING N N 26 A1EEN C4 N SING N N 27 A1EEN C5 N SING N N 28 A1EEN C5 O1 SING N N 29 A1EEN O1 C6 SING N N 30 A1EEN C6 C7 SING N N 31 A1EEN C8 C7 DOUB Y N 32 A1EEN C8 C9 SING Y N 33 A1EEN C7 C12 SING Y N 34 A1EEN C9 C10 DOUB Y N 35 A1EEN C12 C11 DOUB Y N 36 A1EEN C10 C11 SING Y N 37 A1EEN C10 H1 SING N N 38 A1EEN N2 H2 SING N N 39 A1EEN N1 H3 SING N N 40 A1EEN C18 H5 SING N N 41 A1EEN C16 H7 SING N N 42 A1EEN C15 H8 SING N N 43 A1EEN C23 H9 SING N N 44 A1EEN C24 H10 SING N N 45 A1EEN C4 H11 SING N N 46 A1EEN C3 H12 SING N N 47 A1EEN C3 H13 SING N N 48 A1EEN C1 H14 SING N N 49 A1EEN C2 H15 SING N N 50 A1EEN C2 H16 SING N N 51 A1EEN C2 H17 SING N N 52 A1EEN C H18 SING N N 53 A1EEN C H19 SING N N 54 A1EEN C H20 SING N N 55 A1EEN N H21 SING N N 56 A1EEN C6 H22 SING N N 57 A1EEN C6 H23 SING N N 58 A1EEN C12 H24 SING N N 59 A1EEN C11 H25 SING N N 60 A1EEN C9 H26 SING N N 61 A1EEN C8 H27 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EEN InChI InChI 1.06 "InChI=1S/C25H25N3O7/c1-15(2)12-20(26-25(33)34-14-17-6-4-3-5-7-17)23(31)35-18-10-8-16(9-11-18)13-19-21(29)27-24(32)28-22(19)30/h3-11,13,15,20H,12,14H2,1-2H3,(H,26,33)(H2,27,28,29,30,32)/t20-/m0/s1" A1EEN InChIKey InChI 1.06 RKVHWPXSRBFIBY-FQEVSTJZSA-N A1EEN SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1ccccc1)C(=O)Oc2ccc(cc2)C=C3C(=O)NC(=O)NC3=O" A1EEN SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1ccccc1)C(=O)Oc2ccc(cc2)C=C3C(=O)NC(=O)NC3=O" A1EEN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)Oc1ccc(cc1)C=C2C(=O)NC(=O)NC2=O)NC(=O)OCc3ccccc3" A1EEN SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)Oc1ccc(cc1)C=C2C(=O)NC(=O)NC2=O)NC(=O)OCc3ccccc3" # _pdbx_chem_comp_identifier.comp_id A1EEN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[4-[[2,4,6-tris(oxidanylidene)-1,3-diazinan-5-ylidene]methyl]phenyl] (2~{S})-4-methyl-2-(phenylmethoxycarbonylamino)pentanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EEN "Create component" 2024-10-22 PDBC A1EEN "Modify PCM" 2024-12-06 PDBC A1EEN "Initial release" 2025-04-02 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1EEN _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #