data_A1EF1 # _chem_comp.id A1EF1 _chem_comp.name "~{N}-[[1-(dimethylamino)cyclopentyl]methyl]-3,5-dimethoxy-4-phenylmethoxy-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H32 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-21 _chem_comp.pdbx_modified_date 2025-11-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.522 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EF1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KM7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EF1 C10 C1 C 0 1 N N N N N N 99.643 107.887 107.765 7.127 -0.001 -1.547 C10 A1EF1 1 A1EF1 C13 C2 C 0 1 N N N N N N 100.404 105.401 104.979 5.089 -0.273 2.339 C13 A1EF1 2 A1EF1 C15 C3 C 0 1 N N N N N N 100.767 109.310 103.224 1.950 1.504 -0.018 C15 A1EF1 3 A1EF1 C17 C4 C 0 1 Y N N N N N 100.262 110.450 100.871 -0.465 2.090 0.117 C17 A1EF1 4 A1EF1 C20 C5 C 0 1 Y N N N N N 100.508 110.518 99.347 -1.793 1.719 0.218 C20 A1EF1 5 A1EF1 C21 C6 C 0 1 Y N N N N N 101.486 109.523 98.687 -2.137 0.372 0.298 C21 A1EF1 6 A1EF1 C22 C7 C 0 1 N N N N N N 103.010 110.141 96.965 -4.149 -0.216 -0.825 C22 A1EF1 7 A1EF1 C24 C8 C 0 1 N N N N N N 98.822 112.189 99.216 -2.340 4.033 0.154 C24 A1EF1 8 A1EF1 C26 C9 C 0 1 Y N N N N N 101.772 110.669 94.707 -6.546 0.369 -0.407 C26 A1EF1 9 A1EF1 C28 C10 C 0 1 Y N N N N N 101.715 111.412 93.405 -7.853 0.011 -0.131 C28 A1EF1 10 A1EF1 C07 C11 C 0 1 N N N N N N 101.248 107.438 106.081 5.201 -0.299 -0.079 C07 A1EF1 11 A1EF1 C08 C12 C 0 1 N N N N N N 99.685 107.535 106.463 6.689 0.106 -0.065 C08 A1EF1 12 A1EF1 C09 C13 C 0 1 N N N N N N 101.929 107.159 107.446 4.994 -1.164 -1.334 C09 A1EF1 13 A1EF1 C11 C14 C 0 1 N N N N N N 101.197 107.945 108.314 6.363 -1.255 -2.039 C11 A1EF1 14 A1EF1 C12 C15 C 0 1 N N N N N N 101.687 108.731 105.609 4.319 0.949 -0.152 C12 A1EF1 15 A1EF1 C14 C16 C 0 1 N N N N N N 102.794 105.613 105.401 5.658 -2.318 1.175 C14 A1EF1 16 A1EF1 C16 C17 C 0 1 Y N N N N N 100.993 109.382 101.713 0.532 1.112 0.095 C16 A1EF1 17 A1EF1 C18 C18 C 0 1 Y N N N N N 101.975 108.395 101.038 0.184 -0.239 0.181 C18 A1EF1 18 A1EF1 C19 C19 C 0 1 Y N N N N N 102.213 108.471 99.531 -1.145 -0.604 0.276 C19 A1EF1 19 A1EF1 C23 C20 C 0 1 N N N N N N 102.663 106.208 98.954 -0.416 -2.868 0.327 C23 A1EF1 20 A1EF1 C25 C21 C 0 1 Y N N N N N 102.947 110.889 95.661 -5.572 -0.606 -0.519 C25 A1EF1 21 A1EF1 C27 C22 C 0 1 Y N N N N N 104.069 111.866 95.284 -5.903 -1.937 -0.350 C27 A1EF1 22 A1EF1 C29 C23 C 0 1 Y N N N N N 104.012 112.615 93.975 -7.209 -2.294 -0.070 C29 A1EF1 23 A1EF1 C30 C24 C 0 1 Y N N N N N 102.841 112.398 93.025 -8.185 -1.321 0.031 C30 A1EF1 24 A1EF1 N05 N1 N 0 1 N N N N N N 101.523 106.369 105.091 4.879 -1.074 1.126 N05 A1EF1 25 A1EF1 N06 N2 N 0 1 N N N N N N 101.867 108.794 104.106 2.911 0.560 -0.039 N06 A1EF1 26 A1EF1 O01 O1 O 0 1 N N N N N N 99.721 109.679 103.702 2.251 2.680 -0.093 O01 A1EF1 27 A1EF1 O02 O2 O 0 1 N N N N N N 103.107 107.560 98.916 -1.485 -1.919 0.355 O02 A1EF1 28 A1EF1 O03 O3 O 0 1 N N N N N N 99.854 111.478 98.553 -2.765 2.671 0.239 O03 A1EF1 29 A1EF1 O04 O4 O 0 1 N N N N N N 101.723 109.592 97.283 -3.444 0.011 0.397 O04 A1EF1 30 A1EF1 H1 H1 H 0 1 N N N N N N 99.170 108.874 107.872 6.819 0.883 -2.105 H1 A1EF1 31 A1EF1 H2 H2 H 0 1 N N N N N N 99.070 107.142 108.337 8.204 -0.149 -1.625 H2 A1EF1 32 A1EF1 H3 H3 H 0 1 N N N N N N 99.473 105.941 104.753 6.124 0.066 2.376 H3 A1EF1 33 A1EF1 H4 H4 H 0 1 N N N N N N 100.618 104.685 104.171 4.424 0.591 2.324 H4 A1EF1 34 A1EF1 H5 H5 H 0 1 N N N N N N 100.292 104.859 105.929 4.874 -0.881 3.218 H5 A1EF1 35 A1EF1 H6 H6 H 0 1 N N N N N N 99.584 111.145 101.344 -0.199 3.134 0.051 H6 A1EF1 36 A1EF1 H7 H7 H 0 1 N N N N N N 103.743 109.325 96.881 -3.664 -1.019 -1.380 H7 A1EF1 37 A1EF1 H8 H8 H 0 1 N N N N N N 103.319 110.830 97.765 -4.142 0.695 -1.423 H8 A1EF1 38 A1EF1 H9 H9 H 0 1 N N N N N N 98.370 112.913 98.522 -3.212 4.687 0.181 H9 A1EF1 39 A1EF1 H10 H10 H 0 1 N N N N N N 98.053 111.482 99.560 -1.686 4.263 0.994 H10 A1EF1 40 A1EF1 H11 H11 H 0 1 N N N N N N 99.242 112.723 100.081 -1.800 4.187 -0.780 H11 A1EF1 41 A1EF1 H12 H12 H 0 1 N N N N N N 100.984 109.979 94.970 -6.287 1.409 -0.539 H12 A1EF1 42 A1EF1 H13 H13 H 0 1 N N N N N N 100.885 111.257 92.732 -8.614 0.772 -0.044 H13 A1EF1 43 A1EF1 H14 H14 H 0 1 N N N N N N 99.187 108.296 105.845 7.266 -0.581 0.554 H14 A1EF1 44 A1EF1 H15 H15 H 0 1 N N N N N N 99.194 106.562 106.314 6.803 1.130 0.293 H15 A1EF1 45 A1EF1 H16 H16 H 0 1 N N N N N N 101.856 106.095 107.716 4.654 -2.160 -1.049 H16 A1EF1 46 A1EF1 H17 H17 H 0 1 N N N N N N 102.986 107.462 107.432 4.264 -0.696 -1.995 H17 A1EF1 47 A1EF1 H18 H18 H 0 1 N N N N N N 101.258 107.546 109.337 6.238 -1.226 -3.121 H18 A1EF1 48 A1EF1 H19 H19 H 0 1 N N N N N N 101.570 108.980 108.302 6.887 -2.163 -1.739 H19 A1EF1 49 A1EF1 H20 H20 H 0 1 N N N N N N 102.650 108.968 106.086 4.576 1.624 0.665 H20 A1EF1 50 A1EF1 H21 H21 H 0 1 N N N N N N 100.938 109.482 105.902 4.481 1.454 -1.104 H21 A1EF1 51 A1EF1 H22 H22 H 0 1 N N N N N N 103.631 106.321 105.486 5.400 -2.873 2.078 H22 A1EF1 52 A1EF1 H23 H23 H 0 1 N N N N N N 102.675 105.070 106.350 5.431 -2.925 0.299 H23 A1EF1 53 A1EF1 H24 H24 H 0 1 N N N N N N 103.001 104.897 104.592 6.722 -2.081 1.187 H24 A1EF1 54 A1EF1 H25 H25 H 0 1 N N N N N N 102.491 107.654 101.631 0.953 -0.997 0.164 H25 A1EF1 55 A1EF1 H26 H26 H 0 1 N N N N N N 103.405 105.564 98.460 0.138 -2.763 -0.605 H26 A1EF1 56 A1EF1 H27 H27 H 0 1 N N N N N N 102.541 105.891 100.000 0.252 -2.687 1.169 H27 A1EF1 57 A1EF1 H28 H28 H 0 1 N N N N N N 101.699 106.124 98.431 -0.824 -3.876 0.397 H28 A1EF1 58 A1EF1 H29 H29 H 0 1 N N N N N N 104.900 112.018 95.956 -5.142 -2.698 -0.438 H29 A1EF1 59 A1EF1 H30 H30 H 0 1 N N N N N N 104.801 113.304 93.712 -7.468 -3.334 0.062 H30 A1EF1 60 A1EF1 H31 H31 H 0 1 N N N N N N 102.798 112.933 92.088 -9.206 -1.600 0.247 H31 A1EF1 61 A1EF1 H33 H33 H 0 1 N N N N N N 102.727 108.489 103.697 2.671 -0.378 0.021 H33 A1EF1 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EF1 C30 C28 DOUB Y N 1 A1EF1 C30 C29 SING Y N 2 A1EF1 C28 C26 SING Y N 3 A1EF1 C29 C27 DOUB Y N 4 A1EF1 C26 C25 DOUB Y N 5 A1EF1 C27 C25 SING Y N 6 A1EF1 C25 C22 SING N N 7 A1EF1 C22 O04 SING N N 8 A1EF1 O04 C21 SING N N 9 A1EF1 O03 C24 SING N N 10 A1EF1 O03 C20 SING N N 11 A1EF1 C21 C20 DOUB Y N 12 A1EF1 C21 C19 SING Y N 13 A1EF1 O02 C23 SING N N 14 A1EF1 O02 C19 SING N N 15 A1EF1 C20 C17 SING Y N 16 A1EF1 C19 C18 DOUB Y N 17 A1EF1 C17 C16 DOUB Y N 18 A1EF1 C18 C16 SING Y N 19 A1EF1 C16 C15 SING N N 20 A1EF1 C15 O01 DOUB N N 21 A1EF1 C15 N06 SING N N 22 A1EF1 N06 C12 SING N N 23 A1EF1 C13 N05 SING N N 24 A1EF1 N05 C14 SING N N 25 A1EF1 N05 C07 SING N N 26 A1EF1 C12 C07 SING N N 27 A1EF1 C07 C08 SING N N 28 A1EF1 C07 C09 SING N N 29 A1EF1 C08 C10 SING N N 30 A1EF1 C09 C11 SING N N 31 A1EF1 C10 C11 SING N N 32 A1EF1 C10 H1 SING N N 33 A1EF1 C10 H2 SING N N 34 A1EF1 C13 H3 SING N N 35 A1EF1 C13 H4 SING N N 36 A1EF1 C13 H5 SING N N 37 A1EF1 C17 H6 SING N N 38 A1EF1 C22 H7 SING N N 39 A1EF1 C22 H8 SING N N 40 A1EF1 C24 H9 SING N N 41 A1EF1 C24 H10 SING N N 42 A1EF1 C24 H11 SING N N 43 A1EF1 C26 H12 SING N N 44 A1EF1 C28 H13 SING N N 45 A1EF1 C08 H14 SING N N 46 A1EF1 C08 H15 SING N N 47 A1EF1 C09 H16 SING N N 48 A1EF1 C09 H17 SING N N 49 A1EF1 C11 H18 SING N N 50 A1EF1 C11 H19 SING N N 51 A1EF1 C12 H20 SING N N 52 A1EF1 C12 H21 SING N N 53 A1EF1 C14 H22 SING N N 54 A1EF1 C14 H23 SING N N 55 A1EF1 C14 H24 SING N N 56 A1EF1 C18 H25 SING N N 57 A1EF1 C23 H26 SING N N 58 A1EF1 C23 H27 SING N N 59 A1EF1 C23 H28 SING N N 60 A1EF1 C27 H29 SING N N 61 A1EF1 C29 H30 SING N N 62 A1EF1 C30 H31 SING N N 63 A1EF1 N06 H33 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EF1 InChI InChI 1.06 "InChI=1S/C24H32N2O4/c1-26(2)24(12-8-9-13-24)17-25-23(27)19-14-20(28-3)22(21(15-19)29-4)30-16-18-10-6-5-7-11-18/h5-7,10-11,14-15H,8-9,12-13,16-17H2,1-4H3,(H,25,27)" A1EF1 InChIKey InChI 1.06 ZCYOBMASPXQBSZ-UHFFFAOYSA-N A1EF1 SMILES_CANONICAL CACTVS 3.385 "COc1cc(cc(OC)c1OCc2ccccc2)C(=O)NCC3(CCCC3)N(C)C" A1EF1 SMILES CACTVS 3.385 "COc1cc(cc(OC)c1OCc2ccccc2)C(=O)NCC3(CCCC3)N(C)C" A1EF1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C1(CCCC1)CNC(=O)c2cc(c(c(c2)OC)OCc3ccccc3)OC" A1EF1 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C1(CCCC1)CNC(=O)c2cc(c(c(c2)OC)OCc3ccccc3)OC" # _pdbx_chem_comp_identifier.comp_id A1EF1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[1-(dimethylamino)cyclopentyl]methyl]-3,5-dimethoxy-4-phenylmethoxy-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EF1 "Create component" 2024-11-21 PDBC A1EF1 "Initial release" 2025-11-19 RCSB #