data_A1EFM # _chem_comp.id A1EFM _chem_comp.name "[(2~{R})-1-[[(2~{S})-2,3-bis(oxidanyl)propoxy]-oxidanyl-phosphoryl]oxy-3-nonanoyloxy-propan-2-yl] decanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H49 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-12 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.624 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EFM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KDA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EFM C15 C1 C 0 1 N N N N N N 121.873 106.593 104.250 -3.935 0.986 0.375 C15 A1EFM 1 A1EFM C17 C2 C 0 1 N N N N N N 121.136 106.417 106.659 -6.260 1.092 -0.536 C17 A1EFM 2 A1EFM C20 C3 C 0 1 N N N N N N 121.138 107.171 110.360 -10.062 0.961 -1.130 C20 A1EFM 3 A1EFM C21 C4 C 0 1 N N N N N N 122.305 107.342 111.328 -10.908 1.303 -2.358 C21 A1EFM 4 A1EFM C22 C5 C 0 1 N N N N N N 121.854 107.315 112.786 -12.386 1.067 -2.041 C22 A1EFM 5 A1EFM C01 C6 C 0 1 N N N N N N 122.822 111.514 113.628 11.154 3.901 -2.316 C01 A1EFM 6 A1EFM C02 C7 C 0 1 N N N N N N 123.198 110.944 112.264 9.913 3.018 -2.458 C02 A1EFM 7 A1EFM C03 C8 C 0 1 N N N N N N 122.311 111.489 111.148 8.934 3.328 -1.323 C03 A1EFM 8 A1EFM C04 C9 C 0 1 N N N N N N 122.815 111.094 109.762 7.693 2.444 -1.465 C04 A1EFM 9 A1EFM C05 C10 C 0 1 N N N N N N 121.840 111.490 108.657 6.714 2.754 -0.331 C05 A1EFM 10 A1EFM C06 C11 C 0 1 N N N N N N 122.541 112.245 107.532 5.473 1.871 -0.473 C06 A1EFM 11 A1EFM C07 C12 C 0 1 N N N N N N 122.491 111.486 106.209 4.494 2.181 0.661 C07 A1EFM 12 A1EFM C08 C13 C 0 1 N N N N N N 122.640 112.416 105.009 3.253 1.297 0.519 C08 A1EFM 13 A1EFM C09 C14 C 0 1 N N N N N N 122.557 111.657 103.689 2.288 1.602 1.636 C09 A1EFM 14 A1EFM O10 O1 O 0 1 N N N N N N 123.159 110.400 103.578 1.122 0.943 1.715 O10 A1EFM 15 A1EFM C11 C15 C 0 1 N N N N N N 123.385 109.996 102.259 0.242 1.289 2.817 C11 A1EFM 16 A1EFM C12 C16 C 0 1 N N R N N N 124.087 108.645 102.306 -1.029 0.440 2.741 C12 A1EFM 17 A1EFM O13 O2 O 0 1 N N N N N N 123.136 107.623 102.310 -1.767 0.782 1.538 O13 A1EFM 18 A1EFM C14 C17 C 0 1 N N N N N N 123.161 106.856 103.478 -3.102 0.650 1.585 C14 A1EFM 19 A1EFM C16 C18 C 0 1 N N N N N N 122.155 105.975 105.615 -5.414 0.750 0.692 C16 A1EFM 20 A1EFM C18 C19 C 0 1 N N N N N N 121.639 106.195 108.081 -7.738 0.856 -0.219 C18 A1EFM 21 A1EFM C19 C20 C 0 1 N N N N N N 121.545 107.465 108.920 -8.584 1.197 -1.447 C19 A1EFM 22 A1EFM C23 C21 C 0 1 N N N N N N 123.029 107.185 113.752 -13.232 1.408 -3.269 C23 A1EFM 23 A1EFM O24 O3 O 0 1 N N N N N N 124.184 106.410 103.873 -3.636 0.262 2.597 O24 A1EFM 24 A1EFM C25 C22 C 0 1 N N N N N N 124.966 108.502 101.073 -0.651 -1.042 2.703 C25 A1EFM 25 A1EFM O26 O4 O 0 1 N N N N N N 124.131 108.562 99.957 0.256 -1.275 1.624 O26 A1EFM 26 A1EFM P27 P1 P 0 1 N N N N N N 124.828 108.408 98.477 0.863 -2.728 1.287 P27 A1EFM 27 A1EFM O28 O5 O 0 1 N N N N N N 126.296 108.104 98.639 1.799 -3.213 2.503 O28 A1EFM 28 A1EFM O29 O6 O 0 1 N N N N N N 124.645 109.829 97.671 1.737 -2.644 -0.063 O29 A1EFM 29 A1EFM C30 C23 C 0 1 N N N N N N 123.368 110.394 97.618 2.322 -3.791 -0.683 C30 A1EFM 30 A1EFM C31 C24 C 0 1 N N S N N N 123.396 111.455 96.524 3.081 -3.359 -1.940 C31 A1EFM 31 A1EFM O32 O7 O 0 1 N N N N N N 124.057 112.568 97.053 4.181 -2.526 -1.569 O32 A1EFM 32 A1EFM C33 C25 C 0 1 N N N N N N 124.169 110.983 95.293 3.603 -4.598 -2.671 C33 A1EFM 33 A1EFM O34 O8 O 0 1 N N N N N N 124.697 112.098 94.632 4.209 -4.203 -3.903 O34 A1EFM 34 A1EFM O35 O9 O 0 1 N N N N N N 124.158 107.297 97.707 -0.243 -3.694 1.100 O35 A1EFM 35 A1EFM O36 O10 O 0 1 N N N N N N 121.983 112.129 102.766 2.566 2.440 2.461 O36 A1EFM 36 A1EFM H1 H1 H 0 1 N N N N N N 121.341 107.545 104.392 -3.783 2.032 0.108 H1 A1EFM 37 A1EFM H2 H2 H 0 1 N N N N N N 121.243 105.904 103.669 -3.637 0.351 -0.459 H2 A1EFM 38 A1EFM H3 H3 H 0 1 N N N N N N 120.927 107.488 106.520 -6.107 2.137 -0.803 H3 A1EFM 39 A1EFM H4 H4 H 0 1 N N N N N N 120.210 105.841 106.516 -5.961 0.456 -1.370 H4 A1EFM 40 A1EFM H5 H5 H 0 1 N N N N N N 120.332 107.861 110.650 -10.360 1.596 -0.296 H5 A1EFM 41 A1EFM H6 H6 H 0 1 N N N N N N 120.774 106.135 110.422 -10.214 -0.084 -0.863 H6 A1EFM 42 A1EFM H7 H7 H 0 1 N N N N N N 123.023 106.525 111.164 -10.755 2.348 -2.625 H7 A1EFM 43 A1EFM H8 H8 H 0 1 N N N N N N 122.794 108.306 111.126 -10.609 0.668 -3.193 H8 A1EFM 44 A1EFM H9 H9 H 0 1 N N N N N N 121.315 108.248 113.007 -12.538 0.021 -1.774 H9 A1EFM 45 A1EFM H10 H10 H 0 1 N N N N N N 121.179 106.459 112.932 -12.684 1.702 -1.207 H10 A1EFM 46 A1EFM H11 H11 H 0 1 N N N N N N 123.486 111.094 114.397 11.852 3.680 -3.124 H11 A1EFM 47 A1EFM H12 H12 H 0 1 N N N N N N 122.929 112.609 113.610 10.861 4.950 -2.365 H12 A1EFM 48 A1EFM H13 H13 H 0 1 N N N N N N 121.779 111.251 113.860 11.634 3.702 -1.357 H13 A1EFM 49 A1EFM H14 H14 H 0 1 N N N N N N 123.094 109.849 112.297 9.433 3.217 -3.416 H14 A1EFM 50 A1EFM H15 H15 H 0 1 N N N N N N 124.244 111.207 112.046 10.206 1.969 -2.408 H15 A1EFM 51 A1EFM H16 H16 H 0 1 N N N N N N 122.290 112.587 111.217 9.414 3.129 -0.365 H16 A1EFM 52 A1EFM H17 H17 H 0 1 N N N N N N 121.293 111.094 111.280 8.641 4.376 -1.372 H17 A1EFM 53 A1EFM H18 H18 H 0 1 N N N N N N 122.957 110.004 109.735 7.213 2.643 -2.424 H18 A1EFM 54 A1EFM H19 H19 H 0 1 N N N N N N 123.778 111.594 109.580 7.986 1.395 -1.416 H19 A1EFM 55 A1EFM H20 H20 H 0 1 N N N N N N 121.058 112.134 109.085 7.194 2.555 0.627 H20 A1EFM 56 A1EFM H21 H21 H 0 1 N N N N N N 121.380 110.580 108.244 6.421 3.803 -0.380 H21 A1EFM 57 A1EFM H22 H22 H 0 1 N N N N N N 123.593 112.400 107.812 4.993 2.069 -1.431 H22 A1EFM 58 A1EFM H23 H23 H 0 1 N N N N N N 122.049 113.220 107.400 5.766 0.822 -0.424 H23 A1EFM 59 A1EFM H24 H24 H 0 1 N N N N N N 121.526 110.964 106.136 4.973 1.982 1.620 H24 A1EFM 60 A1EFM H25 H25 H 0 1 N N N N N N 123.308 110.750 106.191 4.201 3.229 0.612 H25 A1EFM 61 A1EFM H26 H26 H 0 1 N N N N N N 123.616 112.920 105.069 2.773 1.496 -0.439 H26 A1EFM 62 A1EFM H27 H27 H 0 1 N N N N N N 121.837 113.167 105.039 3.546 0.248 0.568 H27 A1EFM 63 A1EFM H28 H28 H 0 1 N N N N N N 124.021 110.732 101.745 0.751 1.097 3.762 H28 A1EFM 64 A1EFM H29 H29 H 0 1 N N N N N N 122.427 109.903 101.726 -0.022 2.345 2.754 H29 A1EFM 65 A1EFM H30 H30 H 0 1 N N N N N N 124.718 108.598 103.206 -1.649 0.635 3.616 H30 A1EFM 66 A1EFM H31 H31 H 0 1 N N N N N N 122.119 104.879 105.524 -5.566 -0.295 0.959 H31 A1EFM 67 A1EFM H32 H32 H 0 1 N N N N N N 123.158 106.283 105.944 -5.712 1.385 1.527 H32 A1EFM 68 A1EFM H33 H33 H 0 1 N N N N N N 121.032 105.410 108.555 -7.890 -0.190 0.048 H33 A1EFM 69 A1EFM H34 H34 H 0 1 N N N N N N 122.690 105.872 108.041 -8.036 1.491 0.615 H34 A1EFM 70 A1EFM H35 H35 H 0 1 N N N N N N 122.526 107.962 108.923 -8.285 0.562 -2.281 H35 A1EFM 71 A1EFM H36 H36 H 0 1 N N N N N N 120.797 108.134 108.469 -8.431 2.243 -1.714 H36 A1EFM 72 A1EFM H37 H37 H 0 1 N N N N N N 122.654 107.170 114.786 -14.285 1.240 -3.043 H37 A1EFM 73 A1EFM H38 H38 H 0 1 N N N N N N 123.572 106.251 113.545 -13.080 2.454 -3.536 H38 A1EFM 74 A1EFM H39 H39 H 0 1 N N N N N N 123.708 108.040 113.621 -12.933 0.773 -4.104 H39 A1EFM 75 A1EFM H40 H40 H 0 1 N N N N N N 125.493 107.537 101.097 -0.175 -1.319 3.644 H40 A1EFM 76 A1EFM H41 H41 H 0 1 N N N N N N 125.700 109.320 101.038 -1.549 -1.642 2.560 H41 A1EFM 77 A1EFM H42 H42 H 0 1 N N N N N N 126.496 107.274 98.222 2.546 -2.626 2.683 H42 A1EFM 78 A1EFM H43 H43 H 0 1 N N N N N N 123.118 110.855 98.585 3.013 -4.267 0.013 H43 A1EFM 79 A1EFM H44 H44 H 0 1 N N N N N N 122.623 109.622 97.376 1.538 -4.497 -0.956 H44 A1EFM 80 A1EFM H45 H45 H 0 1 N N N N N N 122.365 111.706 96.232 2.411 -2.805 -2.596 H45 A1EFM 81 A1EFM H46 H46 H 0 1 N N N N N N 123.592 112.878 97.821 4.820 -2.955 -0.984 H46 A1EFM 82 A1EFM H47 H47 H 0 1 N N N N N N 123.491 110.440 94.618 4.340 -5.104 -2.048 H47 A1EFM 83 A1EFM H48 H48 H 0 1 N N N N N N 124.987 110.317 95.604 2.774 -5.276 -2.875 H48 A1EFM 84 A1EFM H49 H49 H 0 1 N N N N N N 125.179 111.813 93.865 4.563 -4.939 -4.421 H49 A1EFM 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EFM O34 C33 SING N N 1 A1EFM C33 C31 SING N N 2 A1EFM C31 O32 SING N N 3 A1EFM C31 C30 SING N N 4 A1EFM C30 O29 SING N N 5 A1EFM O29 P27 SING N N 6 A1EFM O35 P27 DOUB N N 7 A1EFM P27 O28 SING N N 8 A1EFM P27 O26 SING N N 9 A1EFM O26 C25 SING N N 10 A1EFM C25 C12 SING N N 11 A1EFM C11 C12 SING N N 12 A1EFM C11 O10 SING N N 13 A1EFM C12 O13 SING N N 14 A1EFM O13 C14 SING N N 15 A1EFM O36 C09 DOUB N N 16 A1EFM C14 O24 DOUB N N 17 A1EFM C14 C15 SING N N 18 A1EFM O10 C09 SING N N 19 A1EFM C09 C08 SING N N 20 A1EFM C15 C16 SING N N 21 A1EFM C08 C07 SING N N 22 A1EFM C16 C17 SING N N 23 A1EFM C07 C06 SING N N 24 A1EFM C17 C18 SING N N 25 A1EFM C06 C05 SING N N 26 A1EFM C18 C19 SING N N 27 A1EFM C05 C04 SING N N 28 A1EFM C19 C20 SING N N 29 A1EFM C04 C03 SING N N 30 A1EFM C20 C21 SING N N 31 A1EFM C03 C02 SING N N 32 A1EFM C21 C22 SING N N 33 A1EFM C02 C01 SING N N 34 A1EFM C22 C23 SING N N 35 A1EFM C15 H1 SING N N 36 A1EFM C15 H2 SING N N 37 A1EFM C17 H3 SING N N 38 A1EFM C17 H4 SING N N 39 A1EFM C20 H5 SING N N 40 A1EFM C20 H6 SING N N 41 A1EFM C21 H7 SING N N 42 A1EFM C21 H8 SING N N 43 A1EFM C22 H9 SING N N 44 A1EFM C22 H10 SING N N 45 A1EFM C01 H11 SING N N 46 A1EFM C01 H12 SING N N 47 A1EFM C01 H13 SING N N 48 A1EFM C02 H14 SING N N 49 A1EFM C02 H15 SING N N 50 A1EFM C03 H16 SING N N 51 A1EFM C03 H17 SING N N 52 A1EFM C04 H18 SING N N 53 A1EFM C04 H19 SING N N 54 A1EFM C05 H20 SING N N 55 A1EFM C05 H21 SING N N 56 A1EFM C06 H22 SING N N 57 A1EFM C06 H23 SING N N 58 A1EFM C07 H24 SING N N 59 A1EFM C07 H25 SING N N 60 A1EFM C08 H26 SING N N 61 A1EFM C08 H27 SING N N 62 A1EFM C11 H28 SING N N 63 A1EFM C11 H29 SING N N 64 A1EFM C12 H30 SING N N 65 A1EFM C16 H31 SING N N 66 A1EFM C16 H32 SING N N 67 A1EFM C18 H33 SING N N 68 A1EFM C18 H34 SING N N 69 A1EFM C19 H35 SING N N 70 A1EFM C19 H36 SING N N 71 A1EFM C23 H37 SING N N 72 A1EFM C23 H38 SING N N 73 A1EFM C23 H39 SING N N 74 A1EFM C25 H40 SING N N 75 A1EFM C25 H41 SING N N 76 A1EFM O28 H42 SING N N 77 A1EFM C30 H43 SING N N 78 A1EFM C30 H44 SING N N 79 A1EFM C31 H45 SING N N 80 A1EFM O32 H46 SING N N 81 A1EFM C33 H47 SING N N 82 A1EFM C33 H48 SING N N 83 A1EFM O34 H49 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EFM InChI InChI 1.06 "InChI=1S/C25H49O10P/c1-3-5-7-9-11-13-15-17-25(29)35-23(21-34-36(30,31)33-19-22(27)18-26)20-32-24(28)16-14-12-10-8-6-4-2/h22-23,26-27H,3-21H2,1-2H3,(H,30,31)/t22-,23+/m0/s1" A1EFM InChIKey InChI 1.06 OPEOXRZNASBKOI-XZOQPEGZSA-N A1EFM SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCC)CO[P](O)(=O)OC[C@@H](O)CO" A1EFM SMILES CACTVS 3.385 "CCCCCCCCCC(=O)O[CH](COC(=O)CCCCCCCC)CO[P](O)(=O)OC[CH](O)CO" A1EFM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCC)COP(=O)(O)OC[C@H](CO)O" A1EFM SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)OC(COC(=O)CCCCCCCC)COP(=O)(O)OCC(CO)O" # _pdbx_chem_comp_identifier.comp_id A1EFM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-1-[[(2~{S})-2,3-bis(oxidanyl)propoxy]-oxidanyl-phosphoryl]oxy-3-nonanoyloxy-propan-2-yl] decanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EFM "Create component" 2024-11-12 PDBC A1EFM "Initial release" 2025-11-12 RCSB #