data_A1EFT # _chem_comp.id A1EFT _chem_comp.name "(2~{S})-2-azanyl-5-[[(5~{R})-5-[4-[[9-chloranyl-7-(2-fluoranyl-6-methoxy-phenyl)-5~{H}-pyrimido[5,4-d][2]benzazepin-2-yl]amino]-2-methoxy-phenyl]-4-oxidanylidene-1,5-dihydroimidazol-2-yl]amino]pentanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C34 H32 Cl F N8 O5" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-14 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 687.120 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EFT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KDS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EFT N1 N1 N 0 1 N N N N N N 1.321 32.175 6.756 0.762 3.034 -0.354 N1 A1EFT 1 A1EFT N3 N2 N 0 1 Y N N N N N 2.683 31.761 8.647 0.660 0.950 0.700 N3 A1EFT 2 A1EFT C4 C1 C 0 1 Y N N N N N 2.483 32.508 4.603 -1.334 4.229 -0.375 C4 A1EFT 3 A1EFT C5 C2 C 0 1 Y N N N N N 2.555 33.096 3.348 -2.712 4.232 -0.524 C5 A1EFT 4 A1EFT C6 C3 C 0 1 Y N N N N N 1.554 33.972 2.934 -3.383 3.048 -0.796 C6 A1EFT 5 A1EFT C7 C4 C 0 1 N N R N N N 1.596 34.651 1.572 -4.881 3.052 -0.959 C7 A1EFT 6 A1EFT C8 C5 C 0 1 N N N N N N 1.615 33.815 0.543 -5.566 2.975 0.391 C8 A1EFT 7 A1EFT C10 C6 C 0 1 Y N N N N N 4.090 29.817 7.257 3.360 0.855 0.765 C10 A1EFT 8 A1EFT C13 C7 C 0 1 N N N N N N 3.856 31.397 2.349 -2.651 6.575 -0.123 C13 A1EFT 9 A1EFT C15 C8 C 0 1 Y N N N N N 5.686 27.964 6.517 5.623 -0.259 0.571 C15 A1EFT 10 A1EFT C17 C9 C 0 1 N N N N N N 5.540 29.380 9.343 3.270 -1.410 1.869 C17 A1EFT 11 A1EFT C20 C10 C 0 1 Y N N N N N 5.511 27.132 4.253 7.614 1.067 0.901 C20 A1EFT 12 A1EFT C21 C11 C 0 1 Y N N N N N 6.150 27.098 5.495 7.019 -0.147 0.630 C21 A1EFT 13 A1EFT C22 C12 C 0 1 Y N N N N N 7.799 27.285 7.866 5.741 -2.391 -0.766 C22 A1EFT 14 A1EFT C24 C13 C 0 1 Y N N N N N 9.397 25.626 8.541 5.997 -3.039 -3.068 C24 A1EFT 15 A1EFT C26 C14 C 0 1 Y N N N N N 10.060 27.362 7.017 7.414 -4.009 -1.392 C26 A1EFT 16 A1EFT C28 C15 C 0 1 N N N N N N 9.437 29.998 6.183 8.227 -4.284 1.171 C28 A1EFT 17 A1EFT C1 C16 C 0 1 Y N N N N N 0.499 34.250 3.789 -2.678 1.865 -0.918 C1 A1EFT 18 A1EFT C2 C17 C 0 1 Y N N N N N 0.429 33.660 5.044 -1.305 1.858 -0.770 C2 A1EFT 19 A1EFT C3 C18 C 0 1 Y N N N N N 1.423 32.782 5.461 -0.628 3.040 -0.498 C3 A1EFT 20 A1EFT O1 O1 O 0 1 N N N N N N 3.658 32.784 2.524 -3.406 5.395 -0.404 O1 A1EFT 21 A1EFT O2 O2 O 0 1 N N N N N N 0.762 32.690 0.506 -5.487 3.780 1.299 O2 A1EFT 22 A1EFT C9 C19 C 0 1 Y N N N N N 2.386 31.471 7.384 1.396 1.936 0.206 C9 A1EFT 23 A1EFT N2 N3 N 0 1 Y N N N N N 3.044 30.541 6.714 2.717 1.900 0.232 N2 A1EFT 24 A1EFT C11 C20 C 0 1 Y N N N N N 4.434 30.096 8.578 2.614 -0.193 1.280 C11 A1EFT 25 A1EFT C12 C21 C 0 1 Y N N N N N 3.682 31.113 9.280 1.230 -0.116 1.237 C12 A1EFT 26 A1EFT C14 C22 C 0 1 Y N N N N N 4.656 28.866 6.317 4.839 0.873 0.794 C14 A1EFT 27 A1EFT C16 C23 C 0 1 N N N N N N 6.439 27.979 7.866 5.061 -1.586 0.271 C16 A1EFT 28 A1EFT N4 N4 N 0 1 N N N N N N 5.661 27.976 9.058 4.029 -2.103 0.834 N4 A1EFT 29 A1EFT C18 C24 C 0 1 Y N N N N N 4.010 28.891 5.050 5.460 2.098 1.064 C18 A1EFT 30 A1EFT C19 C25 C 0 1 Y N N N N N 4.442 28.028 4.036 6.833 2.191 1.117 C19 A1EFT 31 A1EFT C23 C26 C 0 1 Y N N N N N 8.115 26.157 8.605 5.356 -2.283 -2.105 C23 A1EFT 32 A1EFT C25 C27 C 0 1 Y N N N N N 10.367 26.226 7.749 7.017 -3.903 -2.711 C25 A1EFT 33 A1EFT C27 C28 C 0 1 Y N N N N N 8.778 27.892 7.090 6.779 -3.263 -0.412 C27 A1EFT 34 A1EFT CL1 CL1 CL 0 0 N N N N N N 6.043 26.059 2.984 9.344 1.187 0.974 CL1 A1EFT 35 A1EFT F1 F1 F 0 1 N N N N N N 7.195 25.569 9.366 4.360 -1.441 -2.457 F1 A1EFT 36 A1EFT O3 O3 O 0 1 N N N N N N 8.418 29.041 6.357 7.162 -3.376 0.885 O3 A1EFT 37 A1EFT N N5 N 0 1 N N N Y Y N 8.649 36.584 -1.229 -10.565 -3.584 -1.153 N A1EFT 38 A1EFT CA C29 C 0 1 N N S N Y N 7.555 37.021 -2.086 -9.681 -3.867 -0.014 CA A1EFT 39 A1EFT C C30 C 0 1 N N N N Y Y 7.519 38.544 -2.172 -10.467 -4.557 1.072 C A1EFT 40 A1EFT O O4 O 0 1 N N N N Y Y 7.191 39.105 -3.217 -11.672 -4.473 1.092 O A1EFT 41 A1EFT CB C31 C 0 1 N N N N N N 6.218 36.480 -1.579 -9.108 -2.556 0.525 CB A1EFT 42 A1EFT CG C32 C 0 1 N N N N N N 5.090 36.567 -2.590 -8.209 -1.917 -0.535 CG A1EFT 43 A1EFT CD C33 C 0 1 N N N N N N 3.879 35.798 -2.105 -7.636 -0.605 0.004 CD A1EFT 44 A1EFT NE N6 N 0 1 N N N N N N 3.478 36.205 -0.765 -6.775 0.006 -1.012 NE A1EFT 45 A1EFT CZ C34 C 0 1 N N N N N N 2.554 35.574 -0.009 -6.151 1.189 -0.753 CZ A1EFT 46 A1EFT NH1 N7 N 0 1 N N N N N N 2.100 34.502 -0.535 -6.271 1.847 0.380 NH1 A1EFT 47 A1EFT NH2 N8 N 0 1 N N N N N N 2.142 35.823 1.210 -5.333 1.826 -1.641 NH2 A1EFT 48 A1EFT H1 H1 H 0 1 N N N N N N 0.452 32.251 7.245 1.284 3.796 -0.650 H1 A1EFT 49 A1EFT H18 H2 H 0 1 N N N N N N 3.261 31.828 4.918 -0.810 5.150 -0.168 H18 A1EFT 50 A1EFT H4 H4 H 0 1 N N N N N N 4.728 31.230 1.699 -1.931 6.745 -0.924 H4 A1EFT 51 A1EFT H5 H5 H 0 1 N N N N N N 4.032 30.926 3.327 -3.325 7.429 -0.052 H5 A1EFT 52 A1EFT H6 H6 H 0 1 N N N N N N 2.962 30.955 1.884 -2.121 6.451 0.822 H6 A1EFT 53 A1EFT H7 H7 H 0 1 N N N N N N 6.496 29.863 9.094 3.942 -1.107 2.671 H7 A1EFT 54 A1EFT H8 H8 H 0 1 N N N N N N 5.341 29.495 10.419 2.506 -2.077 2.267 H8 A1EFT 55 A1EFT H9 H9 H 0 1 N N N N N N 6.978 26.428 5.672 7.634 -1.019 0.463 H9 A1EFT 56 A1EFT H10 H10 H 0 1 N N N N N N 9.641 24.741 9.111 5.700 -2.956 -4.103 H10 A1EFT 57 A1EFT H11 H11 H 0 1 N N N N N N 10.810 27.830 6.396 8.215 -4.682 -1.122 H11 A1EFT 58 A1EFT H12 H12 H 0 1 N N N N N N 9.048 30.847 5.601 7.941 -5.289 0.861 H12 A1EFT 59 A1EFT H13 H13 H 0 1 N N N N N N 9.778 30.354 7.167 9.121 -3.978 0.627 H13 A1EFT 60 A1EFT H14 H14 H 0 1 N N N N N N 10.281 29.541 5.646 8.433 -4.278 2.241 H14 A1EFT 61 A1EFT H15 H15 H 0 1 N N N N N N -0.277 34.933 3.476 -3.203 0.945 -1.130 H15 A1EFT 62 A1EFT H16 H16 H 0 1 N N N N N N -0.400 33.884 5.698 -0.757 0.932 -0.865 H16 A1EFT 63 A1EFT H17 H17 H 0 1 N N N N N N 3.919 31.352 10.306 0.626 -0.917 1.638 H17 A1EFT 64 A1EFT H21 H21 H 0 1 N N N N N N 3.191 29.572 4.871 4.857 2.978 1.232 H21 A1EFT 65 A1EFT H22 H22 H 0 1 N N N N N N 3.951 28.048 3.074 7.302 3.141 1.327 H22 A1EFT 66 A1EFT H23 H23 H 0 1 N N N N N N 11.361 25.807 7.703 7.516 -4.487 -3.471 H23 A1EFT 67 A1EFT H H24 H 0 1 N N N Y Y N 8.659 35.585 -1.183 -11.330 -2.986 -0.877 H A1EFT 68 A1EFT H2 H25 H 0 1 N N N Y Y N 9.517 36.909 -1.605 -10.049 -3.180 -1.920 H2 A1EFT 69 A1EFT HA H27 H 0 1 N N N N Y N 7.718 36.627 -3.100 -8.866 -4.514 -0.340 HA A1EFT 70 A1EFT HB2 H29 H 0 1 N N N N N N 5.928 37.056 -0.688 -9.924 -1.875 0.768 HB2 A1EFT 71 A1EFT HB3 H30 H 0 1 N N N N N N 6.355 35.424 -1.304 -8.524 -2.757 1.423 HB3 A1EFT 72 A1EFT HG2 H31 H 0 1 N N N N N N 5.428 36.142 -3.547 -7.393 -2.598 -0.778 HG2 A1EFT 73 A1EFT HG3 H32 H 0 1 N N N N N N 4.814 37.622 -2.734 -8.793 -1.716 -1.433 HG3 A1EFT 74 A1EFT HD2 H33 H 0 1 N N N N N N 3.043 35.978 -2.797 -8.452 0.075 0.247 HD2 A1EFT 75 A1EFT HD3 H34 H 0 1 N N N N N N 4.120 34.725 -2.093 -7.051 -0.807 0.902 HD3 A1EFT 76 A1EFT OXT O5 O 0 1 N Y N N Y Y 7.869 39.205 -1.073 -9.827 -5.264 2.016 OXT A1EFT 77 A1EFT HE H18 H 0 1 N N N N N N 3.920 37.013 -0.376 -6.650 -0.432 -1.868 HE A1EFT 78 A1EFT HXT H19 H 0 1 N Y N N Y Y 7.821 40.140 -1.236 -10.373 -5.688 2.692 HXT A1EFT 79 A1EFT H19 H35 H 0 1 N N N N N N 0.537 34.944 1.526 -5.205 3.939 -1.504 H19 A1EFT 80 A1EFT H3 H3 H 0 1 N N N N N N 2.216 36.670 1.736 -5.099 1.531 -2.535 H3 A1EFT 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EFT O C DOUB N N 1 A1EFT CG CD SING N N 2 A1EFT CG CB SING N N 3 A1EFT C CA SING N N 4 A1EFT CD NE SING N N 5 A1EFT CA CB SING N N 6 A1EFT CA N SING N N 7 A1EFT NE CZ SING N N 8 A1EFT NH1 CZ DOUB N N 9 A1EFT NH1 C8 SING N N 10 A1EFT CZ NH2 SING N N 11 A1EFT O2 C8 DOUB N N 12 A1EFT C8 C7 SING N N 13 A1EFT NH2 C7 SING N N 14 A1EFT C7 C6 SING N N 15 A1EFT C13 O1 SING N N 16 A1EFT O1 C5 SING N N 17 A1EFT C6 C5 DOUB Y N 18 A1EFT C6 C1 SING Y N 19 A1EFT CL1 C20 SING N N 20 A1EFT C5 C4 SING Y N 21 A1EFT C1 C2 DOUB Y N 22 A1EFT C19 C20 SING Y N 23 A1EFT C19 C18 DOUB Y N 24 A1EFT C20 C21 DOUB Y N 25 A1EFT C4 C3 DOUB Y N 26 A1EFT C2 C3 SING Y N 27 A1EFT C18 C14 SING Y N 28 A1EFT C3 N1 SING N N 29 A1EFT C21 C15 SING Y N 30 A1EFT C28 O3 SING N N 31 A1EFT C14 C15 DOUB Y N 32 A1EFT C14 C10 SING N N 33 A1EFT O3 C27 SING N N 34 A1EFT C15 C16 SING N N 35 A1EFT N2 C10 SING Y N 36 A1EFT N2 C9 DOUB Y N 37 A1EFT N1 C9 SING N N 38 A1EFT C26 C27 DOUB Y N 39 A1EFT C26 C25 SING Y N 40 A1EFT C27 C22 SING Y N 41 A1EFT C10 C11 DOUB Y N 42 A1EFT C9 N3 SING Y N 43 A1EFT C25 C24 DOUB Y N 44 A1EFT C16 C22 SING N N 45 A1EFT C16 N4 DOUB N N 46 A1EFT C22 C23 DOUB Y N 47 A1EFT C24 C23 SING Y N 48 A1EFT C11 C12 SING Y N 49 A1EFT C11 C17 SING N N 50 A1EFT C23 F1 SING N N 51 A1EFT N3 C12 DOUB Y N 52 A1EFT N4 C17 SING N N 53 A1EFT N1 H1 SING N N 54 A1EFT C4 H18 SING N N 55 A1EFT C13 H4 SING N N 56 A1EFT C13 H5 SING N N 57 A1EFT C13 H6 SING N N 58 A1EFT C17 H7 SING N N 59 A1EFT C17 H8 SING N N 60 A1EFT C21 H9 SING N N 61 A1EFT C24 H10 SING N N 62 A1EFT C26 H11 SING N N 63 A1EFT C28 H12 SING N N 64 A1EFT C28 H13 SING N N 65 A1EFT C28 H14 SING N N 66 A1EFT C1 H15 SING N N 67 A1EFT C2 H16 SING N N 68 A1EFT C12 H17 SING N N 69 A1EFT C18 H21 SING N N 70 A1EFT C19 H22 SING N N 71 A1EFT C25 H23 SING N N 72 A1EFT N H SING N N 73 A1EFT N H2 SING N N 74 A1EFT CA HA SING N N 75 A1EFT CB HB2 SING N N 76 A1EFT CB HB3 SING N N 77 A1EFT CG HG2 SING N N 78 A1EFT CG HG3 SING N N 79 A1EFT CD HD2 SING N N 80 A1EFT CD HD3 SING N N 81 A1EFT C OXT SING N N 82 A1EFT NE HE SING N N 83 A1EFT OXT HXT SING N N 84 A1EFT C7 H19 SING N N 85 A1EFT NH2 H3 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EFT InChI InChI 1.06 "InChI=1S/C34H32ClFN8O5/c1-48-25-7-3-5-23(36)27(25)29-22-13-18(35)8-10-20(22)28-17(15-39-29)16-40-34(42-28)41-19-9-11-21(26(14-19)49-2)30-31(45)44-33(43-30)38-12-4-6-24(37)32(46)47/h3,5,7-11,13-14,16,24,30H,4,6,12,15,37H2,1-2H3,(H,46,47)(H,40,41,42)(H2,38,43,44,45)/t24-,30+/m0/s1" A1EFT InChIKey InChI 1.06 CNANQAPNLZLTTG-QABMSTFYSA-N A1EFT SMILES_CANONICAL CACTVS 3.385 "COc1cc(Nc2ncc3CN=C(c4cc(Cl)ccc4c3n2)c5c(F)cccc5OC)ccc1[C@H]6NC(=NC6=O)NCCC[C@H](N)C(O)=O" A1EFT SMILES CACTVS 3.385 "COc1cc(Nc2ncc3CN=C(c4cc(Cl)ccc4c3n2)c5c(F)cccc5OC)ccc1[CH]6NC(=NC6=O)NCCC[CH](N)C(O)=O" A1EFT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1C2=NCc3cnc(nc3-c4c2cc(cc4)Cl)Nc5ccc(c(c5)OC)[C@@H]6C(=O)N=C(N6)NCCC[C@@H](C(=O)O)N)F" A1EFT SMILES "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1C2=NCc3cnc(nc3-c4c2cc(cc4)Cl)Nc5ccc(c(c5)OC)C6C(=O)N=C(N6)NCCCC(C(=O)O)N)F" # _pdbx_chem_comp_identifier.comp_id A1EFT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-5-[[(5~{R})-5-[4-[[9-chloranyl-7-(2-fluoranyl-6-methoxy-phenyl)-5~{H}-pyrimido[5,4-d][2]benzazepin-2-yl]amino]-2-methoxy-phenyl]-4-oxidanylidene-1,5-dihydroimidazol-2-yl]amino]pentanoic acid" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1EFT _pdbx_chem_comp_pcm.modified_residue_id ARG _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EFT "Create component" 2024-11-14 PDBC A1EFT "Modify descriptor" 2025-01-12 PDBC A1EFT "Modify name" 2025-01-13 PDBC A1EFT "Modify atom id" 2025-10-14 PDBC A1EFT "Initial release" 2025-10-22 RCSB #