data_A1EG1 # _chem_comp.id A1EG1 _chem_comp.name "(2~{S})-2-azanyl-6-[(1~{S})-3-azanylidene-6-[[4-[4-[(3-cyclopropyl-1~{H}-pyrazol-5-yl)amino]-6-(prop-2-ynylcarbamoyl)pyrimidin-2-yl]piperazin-1-yl]methyl]-1-oxidanyl-1~{H}-isoindol-2-yl]hexanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C33 H41 N11 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-05 _chem_comp.pdbx_modified_date 2025-11-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 655.750 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EG1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KS6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EG1 N N1 N 0 1 N N N Y Y N -2.168 -22.964 10.132 10.538 0.247 1.146 N A1EG1 1 A1EG1 CA C1 C 0 1 N N S N Y N -3.037 -22.380 9.117 9.652 -0.920 1.033 CA A1EG1 2 A1EG1 C11 C2 C 0 1 N N N N N N -5.784 -29.542 1.286 -3.047 2.055 -2.805 C11 A1EG1 3 A1EG1 C C3 C 0 1 N N N N Y Y -3.040 -20.855 9.189 10.325 -1.982 0.202 C A1EG1 4 A1EG1 O O1 O 0 1 N N N N Y Y -3.523 -20.274 10.161 11.233 -1.686 -0.538 O A1EG1 5 A1EG1 CB C4 C 0 1 N N N N N N -4.461 -22.920 9.274 8.342 -0.502 0.362 CB A1EG1 6 A1EG1 CG C5 C 0 1 N N N N N N -5.492 -22.244 8.390 7.599 0.485 1.265 CG A1EG1 7 A1EG1 CD C6 C 0 1 N N N N N N -6.893 -22.762 8.680 6.289 0.903 0.595 CD A1EG1 8 A1EG1 CE C7 C 0 1 N N N N N N -7.100 -24.164 8.125 5.546 1.889 1.498 CE A1EG1 9 A1EG1 NZ N2 N 0 1 N N N N N N -8.250 -24.225 7.162 4.291 2.289 0.856 NZ A1EG1 10 A1EG1 C10 C8 C 0 1 N N N N N N -5.326 -30.771 2.064 -3.919 1.435 -1.710 C10 A1EG1 11 A1EG1 N12 N3 N 0 1 N N N N N N -6.057 -28.459 2.115 -1.645 2.061 -2.366 N12 A1EG1 12 A1EG1 C13 C9 C 0 1 N N N N N N -7.287 -28.246 2.224 -1.464 2.931 -1.196 C13 A1EG1 13 A1EG1 C15 C10 C 0 1 Y N N N N N -8.108 -27.071 4.452 0.666 2.227 -0.085 C15 A1EG1 14 A1EG1 C17 C11 C 0 1 N N S N N N -8.869 -25.539 6.661 2.995 1.618 1.009 C17 A1EG1 15 A1EG1 C20 C12 C 0 1 N N N N N N -8.273 -23.488 5.829 4.125 3.362 0.012 C20 A1EG1 16 A1EG1 C22 C13 C 0 1 Y N N N N N -7.940 -24.501 4.764 2.715 3.436 -0.429 C22 A1EG1 17 A1EG1 C24 C14 C 0 1 Y N N N N N -7.108 -25.624 2.516 0.698 4.151 -1.518 C24 A1EG1 18 A1EG1 C26 C15 C 0 1 N N N N N N -4.152 -29.313 3.414 -2.049 0.077 -0.990 C26 A1EG1 19 A1EG1 C28 C16 C 0 1 Y N N N N N -2.632 -32.652 5.551 -4.745 -2.419 0.768 C28 A1EG1 20 A1EG1 C01 C17 C 0 1 N N N N N N -2.311 -37.798 -0.201 -8.694 4.732 0.532 C01 A1EG1 21 A1EG1 C02 C18 C 0 1 N N N N N N -1.558 -36.895 0.023 -8.660 3.660 1.011 C02 A1EG1 22 A1EG1 C03 C19 C 0 1 N N N N N N -0.602 -35.748 0.308 -8.617 2.317 1.612 C03 A1EG1 23 A1EG1 N04 N4 N 0 1 N N N N N N -1.277 -34.722 1.049 -7.483 1.572 1.061 N04 A1EG1 24 A1EG1 C05 C20 C 0 1 N N N N N N -1.306 -34.773 2.477 -7.244 0.309 1.468 C05 A1EG1 25 A1EG1 C06 C21 C 0 1 Y N N N N N -2.017 -33.682 3.275 -6.095 -0.446 0.909 C06 A1EG1 26 A1EG1 N07 N5 N 0 1 Y N N N N N -2.742 -32.644 2.603 -5.292 0.116 0.006 N07 A1EG1 27 A1EG1 C08 C22 C 0 1 Y N N N N N -3.420 -31.603 3.386 -4.262 -0.548 -0.492 C08 A1EG1 28 A1EG1 N09 N6 N 0 1 N N N N N N -4.162 -30.526 2.763 -3.452 0.071 -1.429 N09 A1EG1 29 A1EG1 C14 C23 C 0 1 Y N N N N N -7.503 -26.974 3.065 0.008 3.109 -0.925 C14 A1EG1 30 A1EG1 C16 C24 C 0 1 Y N N N N N -8.315 -25.786 5.290 2.011 2.387 0.163 C16 A1EG1 31 A1EG1 O18 O2 O 0 1 N N N N N N -10.220 -25.270 6.580 2.589 1.642 2.379 O18 A1EG1 32 A1EG1 N21 N7 N 0 1 N N N N N N -8.086 -22.192 5.735 5.066 4.189 -0.345 N21 A1EG1 33 A1EG1 C23 C25 C 0 1 Y N N N N N -7.320 -24.377 3.351 2.046 4.320 -1.275 C23 A1EG1 34 A1EG1 C25 C26 C 0 1 N N N N N N -5.470 -28.550 3.376 -1.178 0.697 -2.085 C25 A1EG1 35 A1EG1 N27 N8 N 0 1 Y N N N N N -3.350 -31.628 4.854 -3.987 -1.791 -0.124 N27 A1EG1 36 A1EG1 N29 N9 N 0 1 N N N N N N -2.568 -32.674 7.000 -4.450 -3.719 1.148 N29 A1EG1 37 A1EG1 C30 C27 C 0 1 Y N N N N N -3.208 -31.689 7.851 -3.430 -4.418 0.507 C30 A1EG1 38 A1EG1 N31 N10 N 0 1 Y N N N N N -3.281 -31.760 9.205 -3.102 -5.722 0.704 N31 A1EG1 39 A1EG1 N32 N11 N 0 1 Y N N N N N -3.961 -30.647 9.671 -2.024 -6.024 -0.137 N32 A1EG1 40 A1EG1 C33 C28 C 0 1 Y N N N N N -4.302 -29.889 8.599 -1.714 -4.949 -0.815 C33 A1EG1 41 A1EG1 C34 C29 C 0 1 N N N N N N -5.070 -28.559 8.638 -0.610 -4.838 -1.835 C34 A1EG1 42 A1EG1 C35 C30 C 0 1 N N N N N N -6.026 -28.318 7.481 -0.155 -3.433 -2.234 C35 A1EG1 43 A1EG1 C36 C31 C 0 1 N N N N N N -6.570 -28.671 8.855 0.743 -4.308 -1.357 C36 A1EG1 44 A1EG1 C37 C32 C 0 1 Y N N N N N -3.839 -30.523 7.470 -2.583 -3.922 -0.436 C37 A1EG1 45 A1EG1 C38 C33 C 0 1 Y N N N N N -1.948 -33.705 4.762 -5.840 -1.749 1.322 C38 A1EG1 46 A1EG1 O39 O3 O 0 1 N N N N N N -0.760 -35.689 3.064 -7.970 -0.211 2.291 O39 A1EG1 47 A1EG1 OXT O4 O 0 1 N Y N N Y Y -2.499 -20.211 8.158 9.915 -3.258 0.285 O1 A1EG1 48 A1EG1 H H1 H 0 1 N N N Y Y N -2.190 -23.961 10.057 10.748 0.631 0.237 H1 A1EG1 49 A1EG1 H2 H2 H 0 1 N N N Y Y N -1.232 -22.640 9.996 10.137 0.947 1.751 H2 A1EG1 50 A1EG1 HA H4 H 0 1 N N N N Y N -2.670 -22.673 8.122 9.442 -1.314 2.027 H4 A1EG1 51 A1EG1 H5 H5 H 0 1 N N N N N N -4.990 -29.255 0.580 -3.139 1.467 -3.719 H5 A1EG1 52 A1EG1 H6 H6 H 0 1 N N N N N N -6.696 -29.798 0.727 -3.374 3.077 -2.995 H6 A1EG1 53 A1EG1 HB2 H7 H 0 1 N N N N N N -4.766 -22.785 10.322 8.559 -0.026 -0.594 H7 A1EG1 54 A1EG1 HB3 H8 H 0 1 N N N N N N -4.450 -23.993 9.031 7.721 -1.382 0.197 H8 A1EG1 55 A1EG1 HG2 H9 H 0 1 N N N N N N -5.247 -22.444 7.336 7.382 0.009 2.222 H9 A1EG1 56 A1EG1 HG3 H10 H 0 1 N N N N N N -5.466 -21.160 8.573 8.220 1.365 1.430 H10 A1EG1 57 A1EG1 HD2 H11 H 0 1 N N N N N N -7.626 -22.084 8.219 6.505 1.378 -0.361 H11 A1EG1 58 A1EG1 HD3 H12 H 0 1 N N N N N N -7.047 -22.783 9.769 5.668 0.022 0.430 H12 A1EG1 59 A1EG1 HE2 H13 H 0 1 N N N N N N -7.300 -24.851 8.961 5.329 1.413 2.455 H13 A1EG1 60 A1EG1 HE3 H14 H 0 1 N N N N N N -6.184 -24.478 7.604 6.167 2.770 1.663 H14 A1EG1 61 A1EG1 H15 H15 H 0 1 N N N N N N -6.115 -31.058 2.775 -3.848 2.038 -0.805 H15 A1EG1 62 A1EG1 H16 H16 H 0 1 N N N N N N -5.151 -31.596 1.357 -4.956 1.403 -2.046 H16 A1EG1 63 A1EG1 H18 H18 H 0 1 N N N N N N -7.727 -28.107 1.226 -1.917 3.903 -1.393 H18 A1EG1 64 A1EG1 H19 H19 H 0 1 N N N N N N -7.767 -29.102 2.720 -1.941 2.477 -0.328 H19 A1EG1 65 A1EG1 H20 H20 H 0 1 N N N N N N -8.393 -28.032 4.853 0.125 1.414 0.375 H20 A1EG1 66 A1EG1 H21 H21 H 0 1 N N N N N N -8.631 -26.368 7.344 3.065 0.588 0.658 H21 A1EG1 67 A1EG1 H22 H22 H 0 1 N N N N N N -6.675 -25.547 1.530 0.179 4.836 -2.173 H22 A1EG1 68 A1EG1 H23 H23 H 0 1 N N N N N N -3.893 -29.494 4.468 -1.957 0.664 -0.076 H23 A1EG1 69 A1EG1 H24 H24 H 0 1 N N N N N N -3.380 -28.683 2.949 -1.723 -0.945 -0.799 H24 A1EG1 70 A1EG1 H25 H25 H 0 1 N N N N N N -2.978 -38.598 -0.399 -8.724 5.690 0.104 H25 A1EG1 71 A1EG1 H26 H26 H 0 1 N N N N N N 0.250 -36.121 0.895 -8.504 2.405 2.692 H26 A1EG1 72 A1EG1 H27 H27 H 0 1 N N N N N N -0.238 -35.332 -0.643 -9.543 1.788 1.386 H27 A1EG1 73 A1EG1 H28 H28 H 0 1 N N N N N N -1.727 -33.971 0.566 -6.903 1.987 0.403 H28 A1EG1 74 A1EG1 H29 H29 H 0 1 N N N N N N -10.565 -25.114 7.451 1.739 1.213 2.544 H29 A1EG1 75 A1EG1 H30 H30 H 0 1 N N N N N N -7.932 -21.770 6.628 5.968 4.070 -0.009 H30 A1EG1 76 A1EG1 H31 H31 H 0 1 N N N N N N -7.040 -23.409 2.963 2.581 5.136 -1.739 H31 A1EG1 77 A1EG1 H32 H32 H 0 1 N N N N N N -5.285 -27.529 3.742 -1.248 0.094 -2.990 H32 A1EG1 78 A1EG1 H33 H33 H 0 1 N N N N N N -6.178 -29.057 4.047 -0.141 0.729 -1.749 H33 A1EG1 79 A1EG1 H34 H34 H 0 1 N N N N N N -2.053 -33.411 7.438 -4.955 -4.142 1.861 H34 A1EG1 80 A1EG1 H35 H35 H 0 1 N N N N N N -2.906 -32.494 9.772 -3.537 -6.333 1.319 H35 A1EG1 81 A1EG1 H36 H36 H 0 1 N N N N N N -4.554 -27.687 9.066 -0.605 -5.607 -2.607 H36 A1EG1 82 A1EG1 H37 H37 H 0 1 N N N N N N -6.160 -27.302 7.081 0.149 -3.277 -3.269 H37 A1EG1 83 A1EG1 H38 H38 H 0 1 N N N N N N -6.091 -29.047 6.660 -0.654 -2.589 -1.758 H38 A1EG1 84 A1EG1 H39 H39 H 0 1 N N N N N N -7.098 -27.911 9.449 0.835 -4.039 -0.305 H39 A1EG1 85 A1EG1 H40 H40 H 0 1 N N N N N N -7.029 -29.656 9.029 1.638 -4.728 -1.815 H40 A1EG1 86 A1EG1 H41 H41 H 0 1 N N N N N N -3.951 -30.168 6.456 -2.581 -2.913 -0.822 H41 A1EG1 87 A1EG1 H42 H42 H 0 1 N N N N N N -1.400 -34.488 5.266 -6.472 -2.232 2.053 H42 A1EG1 88 A1EG1 HXT H43 H 0 1 N N N N Y Y -2.553 -19.274 8.306 10.376 -3.904 -0.267 H43 A1EG1 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EG1 C01 C02 TRIP N N 1 A1EG1 C02 C03 SING N N 2 A1EG1 C03 N04 SING N N 3 A1EG1 N04 C05 SING N N 4 A1EG1 C11 C10 SING N N 5 A1EG1 C11 N12 SING N N 6 A1EG1 C10 N09 SING N N 7 A1EG1 N12 C13 SING N N 8 A1EG1 N12 C25 SING N N 9 A1EG1 C13 C14 SING N N 10 A1EG1 C05 O39 DOUB N N 11 A1EG1 C05 C06 SING N N 12 A1EG1 C24 C14 DOUB Y N 13 A1EG1 C24 C23 SING Y N 14 A1EG1 N07 C06 DOUB Y N 15 A1EG1 N07 C08 SING Y N 16 A1EG1 N09 C08 SING N N 17 A1EG1 N09 C26 SING N N 18 A1EG1 C14 C15 SING Y N 19 A1EG1 C06 C38 SING Y N 20 A1EG1 C23 C22 DOUB Y N 21 A1EG1 C25 C26 SING N N 22 A1EG1 C08 N27 DOUB Y N 23 A1EG1 C15 C16 DOUB Y N 24 A1EG1 C38 C28 DOUB Y N 25 A1EG1 C22 C16 SING Y N 26 A1EG1 C22 C20 SING N N 27 A1EG1 N27 C28 SING Y N 28 A1EG1 C16 C17 SING N N 29 A1EG1 C28 N29 SING N N 30 A1EG1 N21 C20 DOUB N N 31 A1EG1 C20 NZ SING N N 32 A1EG1 O18 C17 SING N N 33 A1EG1 C17 NZ SING N N 34 A1EG1 N29 C30 SING N N 35 A1EG1 NZ CE SING N N 36 A1EG1 C37 C30 DOUB Y N 37 A1EG1 C37 C33 SING Y N 38 A1EG1 C35 C34 SING N N 39 A1EG1 C35 C36 SING N N 40 A1EG1 C30 N31 SING Y N 41 A1EG1 CE CD SING N N 42 A1EG1 CG CD SING N N 43 A1EG1 CG CB SING N N 44 A1EG1 C33 C34 SING N N 45 A1EG1 C33 N32 DOUB Y N 46 A1EG1 C34 C36 SING N N 47 A1EG1 CA C SING N N 48 A1EG1 CA CB SING N N 49 A1EG1 CA N SING N N 50 A1EG1 C O DOUB N N 51 A1EG1 N31 N32 SING Y N 52 A1EG1 C OXT SING N N 53 A1EG1 N H SING N N 54 A1EG1 N H2 SING N N 55 A1EG1 CA HA SING N N 56 A1EG1 C11 H5 SING N N 57 A1EG1 C11 H6 SING N N 58 A1EG1 CB HB2 SING N N 59 A1EG1 CB HB3 SING N N 60 A1EG1 CG HG2 SING N N 61 A1EG1 CG HG3 SING N N 62 A1EG1 CD HD2 SING N N 63 A1EG1 CD HD3 SING N N 64 A1EG1 CE HE2 SING N N 65 A1EG1 CE HE3 SING N N 66 A1EG1 C10 H15 SING N N 67 A1EG1 C10 H16 SING N N 68 A1EG1 C13 H18 SING N N 69 A1EG1 C13 H19 SING N N 70 A1EG1 C15 H20 SING N N 71 A1EG1 C17 H21 SING N N 72 A1EG1 C24 H22 SING N N 73 A1EG1 C26 H23 SING N N 74 A1EG1 C26 H24 SING N N 75 A1EG1 C01 H25 SING N N 76 A1EG1 C03 H26 SING N N 77 A1EG1 C03 H27 SING N N 78 A1EG1 N04 H28 SING N N 79 A1EG1 O18 H29 SING N N 80 A1EG1 N21 H30 SING N N 81 A1EG1 C23 H31 SING N N 82 A1EG1 C25 H32 SING N N 83 A1EG1 C25 H33 SING N N 84 A1EG1 N29 H34 SING N N 85 A1EG1 N31 H35 SING N N 86 A1EG1 C34 H36 SING N N 87 A1EG1 C35 H37 SING N N 88 A1EG1 C35 H38 SING N N 89 A1EG1 C36 H39 SING N N 90 A1EG1 C36 H40 SING N N 91 A1EG1 C37 H41 SING N N 92 A1EG1 C38 H42 SING N N 93 A1EG1 OXT HXT SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EG1 InChI InChI 1.06 "InChI=1S/C33H41N11O4/c1-2-10-36-30(45)26-18-27(38-28-17-25(40-41-28)21-7-8-21)39-33(37-26)43-14-12-42(13-15-43)19-20-6-9-22-23(16-20)31(46)44(29(22)35)11-4-3-5-24(34)32(47)48/h1,6,9,16-18,21,24,31,35,46H,3-5,7-8,10-15,19,34H2,(H,36,45)(H,47,48)(H2,37,38,39,40,41)/b35-29-/t24-,31-/m0/s1" A1EG1 InChIKey InChI 1.06 BYOMHCLQZDOHLU-WSDWSCBJSA-N A1EG1 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCN1[C@@H](O)c2cc(CN3CCN(CC3)c4nc(Nc5[nH]nc(c5)C6CC6)cc(n4)C(=O)NCC#C)ccc2C1=N)C(O)=O" A1EG1 SMILES CACTVS 3.385 "N[CH](CCCCN1[CH](O)c2cc(CN3CCN(CC3)c4nc(Nc5[nH]nc(c5)C6CC6)cc(n4)C(=O)NCC#C)ccc2C1=N)C(O)=O" A1EG1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\1/c2ccc(cc2[C@@H](N1CCCC[C@@H](C(=O)O)N)O)CN3CCN(CC3)c4nc(cc(n4)Nc5cc(n[nH]5)C6CC6)C(=O)NCC#C" A1EG1 SMILES "OpenEye OEToolkits" 2.0.7 "C#CCNC(=O)c1cc(nc(n1)N2CCN(CC2)Cc3ccc4c(c3)C(N(C4=N)CCCCC(C(=O)O)N)O)Nc5cc(n[nH]5)C6CC6" # _pdbx_chem_comp_identifier.comp_id A1EG1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[(1~{S})-3-azanylidene-6-[[4-[4-[(3-cyclopropyl-1~{H}-pyrazol-5-yl)amino]-6-(prop-2-ynylcarbamoyl)pyrimidin-2-yl]piperazin-1-yl]methyl]-1-oxidanyl-1~{H}-isoindol-2-yl]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EG1 "Create component" 2024-12-05 PDBC A1EG1 "Modify coordinates" 2025-03-05 PDBC A1EG1 "Initial release" 2025-12-03 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1EG1 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #