data_A1EG3 # _chem_comp.id A1EG3 _chem_comp.name "3-[[(7~{R})-2-[(4-bromophenyl)methylamino]-7-methyl-4-oxidanylidene-3,5,7,8-tetrahydropyrido[4,3-d]pyrimidin-6-yl]methyl]benzenecarbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H22 Br N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-05 _chem_comp.pdbx_modified_date 2025-07-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 464.358 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EG3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KUF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EG3 N1 N1 N 0 1 N N N N N N 111.962 115.177 128.531 1.811 0.165 0.277 N1 A1EG3 1 A1EG3 N3 N2 N 0 1 N N N N N N 112.005 116.879 126.809 -0.113 -1.105 0.026 N3 A1EG3 2 A1EG3 C4 C1 C 0 1 Y N N N N N 111.288 111.728 128.607 4.855 -0.773 0.917 C4 A1EG3 3 A1EG3 C5 C2 C 0 1 Y N N N N N 111.781 112.758 127.973 4.078 -0.555 -0.205 C5 A1EG3 4 A1EG3 C6 C3 C 0 1 N N N N N N 112.493 113.843 128.789 2.625 -0.955 -0.204 C6 A1EG3 5 A1EG3 C8 C4 C 0 1 N N R N N N 113.068 119.395 124.115 -3.429 -2.765 0.222 C8 A1EG3 6 A1EG3 C10 C5 C 0 1 N N N N N N 113.884 117.013 125.357 -2.228 -0.273 0.548 C10 A1EG3 7 A1EG3 C15 C6 C 0 1 N N N N N N 113.982 120.255 125.058 -3.382 -2.930 1.742 C15 A1EG3 8 A1EG3 C21 C7 C 0 1 Y N N N N N 116.487 116.485 120.111 -7.511 0.403 -2.382 C21 A1EG3 9 A1EG3 C22 C8 C 0 1 Y N N N N N 116.155 117.423 120.969 -6.808 -0.656 -1.835 C22 A1EG3 10 A1EG3 CAA C9 C 0 1 Y N N N N N 110.457 110.723 126.523 6.744 0.177 -0.208 CAA A1EG3 11 A1EG3 CAB C10 C 0 1 Y N N N N N 111.646 112.847 126.451 4.633 0.029 -1.329 CAB A1EG3 12 A1EG3 "C5'" C11 C 0 1 Y N N N N N 115.412 115.626 119.481 -7.806 1.510 -1.613 "C5'" A1EG3 13 A1EG3 "C4'" C12 C 0 1 Y N N N N N 114.171 115.845 119.829 -7.392 1.561 -0.281 "C4'" A1EG3 14 A1EG3 "C3'" C13 C 0 1 Y N N N N N 113.793 116.934 120.829 -6.682 0.490 0.265 "C3'" A1EG3 15 A1EG3 "C2'" C14 C 0 1 Y N N N N N 114.715 117.667 121.388 -6.400 -0.614 -0.513 "C2'" A1EG3 16 A1EG3 "C1'" C15 C 0 1 N N N N N N 114.403 118.782 122.387 -5.634 -1.771 0.074 "C1'" A1EG3 17 A1EG3 C1 C16 C 0 1 Y N N N N N 111.030 111.915 125.774 5.965 0.395 -1.331 C1 A1EG3 18 A1EG3 C2 C17 C 0 1 N N N N N N 112.589 115.876 127.436 0.452 0.033 0.370 C2 A1EG3 19 A1EG3 N2 N3 N 0 1 N N N N N N 113.859 115.323 127.116 -0.293 1.080 0.818 N2 A1EG3 20 A1EG3 C3 C18 C 0 1 Y N N N N N 110.583 110.638 127.823 6.187 -0.402 0.918 C3 A1EG3 21 A1EG3 N5 N4 N 0 1 N N N N N N 112.316 114.332 118.733 -7.933 3.617 1.159 N5 A1EG3 22 A1EG3 C9 C19 C 0 1 N N N N N N 112.640 117.456 125.788 -1.436 -1.283 0.102 C9 A1EG3 23 A1EG3 N9 N5 N 0 1 N N N N N N 113.760 118.453 123.437 -4.194 -1.556 -0.122 N9 A1EG3 24 A1EG3 C11 C20 C 0 1 N N N N N N 114.595 115.880 126.043 -1.632 0.951 0.915 C11 A1EG3 25 A1EG3 C12 C21 C 0 1 N N N N N N 112.028 118.636 125.024 -2.008 -2.611 -0.322 C12 A1EG3 26 A1EG3 C14 C22 C 0 1 N N N N N N 114.517 117.760 124.212 -3.721 -0.416 0.670 C14 A1EG3 27 A1EG3 C23 C23 C 0 1 N N N N N N 113.104 114.974 119.206 -7.694 2.708 0.522 C23 A1EG3 28 A1EG3 OP3 O1 O 0 1 N N N N N N 115.847 115.441 125.660 -2.317 1.879 1.313 OP3 A1EG3 29 A1EG3 BR1 BR1 BR 0 0 N N N N N N 109.530 109.325 125.555 8.566 0.685 -0.208 BR1 A1EG3 30 A1EG3 H1 H1 H 0 1 N N N N N N 111.221 115.576 129.071 2.236 0.999 0.532 H1 A1EG3 31 A1EG3 H2 H2 H 0 1 N N N N N N 111.382 111.653 129.680 4.421 -1.229 1.794 H2 A1EG3 32 A1EG3 H3 H3 H 0 1 N N N N N N 112.372 113.616 129.859 2.484 -1.813 0.453 H3 A1EG3 33 A1EG3 H4 H4 H 0 1 N N N N N N 113.562 113.833 128.531 2.319 -1.218 -1.216 H4 A1EG3 34 A1EG3 H5 H5 H 0 1 N N N N N N 112.521 120.070 123.440 -3.899 -3.640 -0.227 H5 A1EG3 35 A1EG3 H6 H6 H 0 1 N N N N N N 113.368 121.002 125.582 -2.918 -2.051 2.189 H6 A1EG3 36 A1EG3 H7 H7 H 0 1 N N N N N N 114.469 119.599 125.794 -4.396 -3.039 2.127 H7 A1EG3 37 A1EG3 H8 H8 H 0 1 N N N N N N 114.749 120.766 124.458 -2.800 -3.816 1.994 H8 A1EG3 38 A1EG3 H9 H9 H 0 1 N N N N N N 117.525 116.327 119.856 -7.827 0.363 -3.414 H9 A1EG3 39 A1EG3 H10 H10 H 0 1 N N N N N N 116.933 118.042 121.391 -6.577 -1.518 -2.442 H10 A1EG3 40 A1EG3 H11 H11 H 0 1 N N N N N N 112.067 113.694 125.929 4.025 0.199 -2.205 H11 A1EG3 41 A1EG3 H12 H12 H 0 1 N N N N N N 115.662 114.856 118.766 -8.355 2.336 -2.042 H12 A1EG3 42 A1EG3 H13 H13 H 0 1 N N N N N N 112.754 117.099 121.075 -6.359 0.523 1.295 H13 A1EG3 43 A1EG3 H14 H14 H 0 1 N N N N N N 115.361 119.219 122.707 -5.849 -1.845 1.140 H14 A1EG3 44 A1EG3 H15 H15 H 0 1 N N N N N N 113.810 119.544 121.860 -5.934 -2.694 -0.422 H15 A1EG3 45 A1EG3 H16 H16 H 0 1 N N N N N N 110.930 111.990 124.701 6.399 0.851 -2.208 H16 A1EG3 46 A1EG3 H17 H17 H 0 1 N N N N N N 114.226 114.554 127.640 0.136 1.913 1.067 H17 A1EG3 47 A1EG3 H18 H18 H 0 1 N N N N N N 110.180 109.782 128.343 6.794 -0.572 1.794 H18 A1EG3 48 A1EG3 H20 H20 H 0 1 N N N N N N 111.616 119.349 125.754 -1.383 -3.415 0.067 H20 A1EG3 49 A1EG3 H21 H21 H 0 1 N N N N N N 111.217 118.256 124.385 -2.029 -2.665 -1.410 H21 A1EG3 50 A1EG3 H22 H22 H 0 1 N N N N N N 115.031 117.017 123.584 -3.983 -0.571 1.717 H22 A1EG3 51 A1EG3 H23 H23 H 0 1 N N N N N N 115.257 118.450 124.644 -4.200 0.495 0.311 H23 A1EG3 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EG3 N5 C23 TRIP N N 1 A1EG3 C23 "C4'" SING N N 2 A1EG3 "C5'" "C4'" DOUB Y N 3 A1EG3 "C5'" C21 SING Y N 4 A1EG3 "C4'" "C3'" SING Y N 5 A1EG3 C21 C22 DOUB Y N 6 A1EG3 "C3'" "C2'" DOUB Y N 7 A1EG3 C22 "C2'" SING Y N 8 A1EG3 "C2'" "C1'" SING N N 9 A1EG3 "C1'" N9 SING N N 10 A1EG3 N9 C8 SING N N 11 A1EG3 N9 C14 SING N N 12 A1EG3 C8 C12 SING N N 13 A1EG3 C8 C15 SING N N 14 A1EG3 C14 C10 SING N N 15 A1EG3 C12 C9 SING N N 16 A1EG3 C10 C9 DOUB N N 17 A1EG3 C10 C11 SING N N 18 A1EG3 BR1 CAA SING N N 19 A1EG3 OP3 C11 DOUB N N 20 A1EG3 C1 CAB DOUB Y N 21 A1EG3 C1 CAA SING Y N 22 A1EG3 C9 N3 SING N N 23 A1EG3 C11 N2 SING N N 24 A1EG3 CAB C5 SING Y N 25 A1EG3 CAA C3 DOUB Y N 26 A1EG3 N3 C2 DOUB N N 27 A1EG3 N2 C2 SING N N 28 A1EG3 C2 N1 SING N N 29 A1EG3 C3 C4 SING Y N 30 A1EG3 C5 C4 DOUB Y N 31 A1EG3 C5 C6 SING N N 32 A1EG3 N1 C6 SING N N 33 A1EG3 N1 H1 SING N N 34 A1EG3 C4 H2 SING N N 35 A1EG3 C6 H3 SING N N 36 A1EG3 C6 H4 SING N N 37 A1EG3 C8 H5 SING N N 38 A1EG3 C15 H6 SING N N 39 A1EG3 C15 H7 SING N N 40 A1EG3 C15 H8 SING N N 41 A1EG3 C21 H9 SING N N 42 A1EG3 C22 H10 SING N N 43 A1EG3 CAB H11 SING N N 44 A1EG3 "C5'" H12 SING N N 45 A1EG3 "C3'" H13 SING N N 46 A1EG3 "C1'" H14 SING N N 47 A1EG3 "C1'" H15 SING N N 48 A1EG3 C1 H16 SING N N 49 A1EG3 N2 H17 SING N N 50 A1EG3 C3 H18 SING N N 51 A1EG3 C12 H20 SING N N 52 A1EG3 C12 H21 SING N N 53 A1EG3 C14 H22 SING N N 54 A1EG3 C14 H23 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EG3 InChI InChI 1.06 "InChI=1S/C23H22BrN5O/c1-15-9-21-20(14-29(15)13-18-4-2-3-17(10-18)11-25)22(30)28-23(27-21)26-12-16-5-7-19(24)8-6-16/h2-8,10,15H,9,12-14H2,1H3,(H2,26,27,28,30)/t15-/m1/s1" A1EG3 InChIKey InChI 1.06 ZBPOHFMDQNQRRG-OAHLLOKOSA-N A1EG3 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CC2=C(CN1Cc3cccc(c3)C#N)C(=O)NC(=N2)NCc4ccc(Br)cc4" A1EG3 SMILES CACTVS 3.385 "C[CH]1CC2=C(CN1Cc3cccc(c3)C#N)C(=O)NC(=N2)NCc4ccc(Br)cc4" A1EG3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CC2=C(CN1Cc3cccc(c3)C#N)C(=O)NC(=N2)NCc4ccc(cc4)Br" A1EG3 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC2=C(CN1Cc3cccc(c3)C#N)C(=O)NC(=N2)NCc4ccc(cc4)Br" # _pdbx_chem_comp_identifier.comp_id A1EG3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[(7~{R})-2-[(4-bromophenyl)methylamino]-7-methyl-4-oxidanylidene-3,5,7,8-tetrahydropyrido[4,3-d]pyrimidin-6-yl]methyl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EG3 "Create component" 2024-12-05 PDBC A1EG3 "Initial release" 2025-07-16 RCSB #