data_A1EGK # _chem_comp.id A1EGK _chem_comp.name "2-[[6-[5-[(~{E})-2-[1-[2-[2-(2-methoxyethoxy)ethoxy]ethyl]pyridin-1-ium-4-yl]ethenyl]thiophen-2-yl]naphthalen-2-yl]-methyl-amino]ethanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H37 N2 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2024-12-02 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 533.701 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EGK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KQK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EGK C12 C1 C 0 1 Y N N N N N 14.805 -27.819 -39.037 7.282 1.999 0.335 C12 A1EGK 1 A1EGK C14 C2 C 0 1 Y N N N N N 14.478 -26.000 -37.507 4.945 1.508 0.059 C14 A1EGK 2 A1EGK C18 C3 C 0 1 Y N N N N N 15.895 -23.353 -35.536 1.798 3.465 0.272 C18 A1EGK 3 A1EGK C21 C4 C 0 1 N N N N N N 16.816 -24.188 -33.455 -0.395 2.307 -0.129 C21 A1EGK 4 A1EGK C23 C5 C 0 1 Y N N N N N 18.066 -23.064 -31.922 -2.481 1.102 -0.533 C23 A1EGK 5 A1EGK C24 C6 C 0 1 Y N N N N N 18.979 -24.069 -31.599 -3.147 -0.095 -0.841 C24 A1EGK 6 A1EGK C28 C7 C 0 1 Y N N N N N 17.766 -22.080 -30.992 -3.255 2.253 -0.322 C28 A1EGK 7 A1EGK C30 C8 C 0 1 N N N N N N 19.865 -21.853 -27.341 -7.267 0.640 0.551 C30 A1EGK 8 A1EGK C01 C9 C 0 1 Y N N N N N 10.854 -27.553 -40.382 8.161 -2.018 -0.488 C01 A1EGK 9 A1EGK C02 C10 C 0 1 Y N N N N N 11.718 -28.512 -40.910 9.197 -1.115 -0.218 C02 A1EGK 10 A1EGK C03 C11 C 0 1 Y N N N N N 13.024 -28.584 -40.451 8.924 0.208 0.054 C03 A1EGK 11 A1EGK C04 C12 C 0 1 Y N N N N N 13.490 -27.713 -39.470 7.593 0.654 0.060 C04 A1EGK 12 A1EGK C05 C13 C 0 1 Y N N N N N 12.634 -26.736 -38.918 6.550 -0.267 -0.216 C05 A1EGK 13 A1EGK C06 C14 C 0 1 Y N N N N N 11.310 -26.672 -39.391 6.864 -1.611 -0.489 C06 A1EGK 14 A1EGK N07 N1 N 0 1 N N N N N N 11.349 -29.330 -41.802 10.520 -1.561 -0.223 N07 A1EGK 15 A1EGK C08 C15 C 0 1 N N N N N N 11.946 -29.297 -43.150 10.818 -2.966 -0.511 C08 A1EGK 16 A1EGK C09 C16 C 0 1 N N N N N N 10.336 -30.339 -41.470 11.609 -0.623 0.059 C09 A1EGK 17 A1EGK C10 C17 C 0 1 N N N N N N 11.853 -27.900 -43.750 10.824 -3.764 0.794 C10 A1EGK 18 A1EGK O11 O1 O 0 1 N N N N N N 12.489 -27.864 -45.000 9.511 -3.764 1.358 O11 A1EGK 19 A1EGK C13 C18 C 0 1 Y N N N N N 15.306 -26.970 -38.063 5.988 2.410 0.336 C13 A1EGK 20 A1EGK C15 C19 C 0 1 Y N N N N N 13.146 -25.875 -37.926 5.219 0.176 -0.211 C15 A1EGK 21 A1EGK C16 C20 C 0 1 Y N N N N N 15.039 -25.230 -36.581 3.546 1.980 0.068 C16 A1EGK 22 A1EGK C17 C21 C 0 1 Y N N N N N 15.227 -23.869 -36.680 3.153 3.261 0.321 C17 A1EGK 23 A1EGK C19 C22 C 0 1 Y N N N N N 16.196 -24.346 -34.625 1.064 2.351 -0.023 C19 A1EGK 24 A1EGK S20 S1 S 0 1 Y N N N N N 15.680 -25.890 -35.143 2.138 0.979 -0.257 S20 A1EGK 25 A1EGK C22 C23 C 0 1 N N N N N N 17.486 -23.079 -33.119 -1.015 1.146 -0.426 C22 A1EGK 26 A1EGK C25 C24 C 0 1 Y N N N N N 19.581 -24.070 -30.348 -4.522 -0.091 -0.925 C25 A1EGK 27 A1EGK N26 N2 N 1 1 Y N N N N N 19.280 -23.103 -29.464 -5.211 1.016 -0.719 N26 A1EGK 28 A1EGK C27 C25 C 0 1 Y N N N N N 18.395 -22.126 -29.758 -4.626 2.163 -0.426 C27 A1EGK 29 A1EGK C29 C26 C 0 1 N N N N N N 19.967 -23.156 -28.127 -6.672 0.971 -0.819 C29 A1EGK 30 A1EGK O31 O2 O 0 1 N N N N N N 21.059 -21.126 -27.449 -8.692 0.596 0.453 O31 A1EGK 31 A1EGK C32 C27 C 0 1 N N N N N N 20.867 -19.873 -26.838 -9.350 0.293 1.685 C32 A1EGK 32 A1EGK C33 C28 C 0 1 N N N N N N 20.905 -18.767 -27.883 -10.864 0.272 1.463 C33 A1EGK 33 A1EGK O34 O3 O 0 1 N N N N N N 20.761 -19.312 -29.171 -11.201 -0.800 0.580 O34 A1EGK 34 A1EGK C35 C29 C 0 1 N N N N N N 20.242 -18.318 -30.018 -12.599 -0.909 0.305 C35 A1EGK 35 A1EGK C36 C30 C 0 1 N N N N N N 20.173 -18.841 -31.447 -12.842 -2.084 -0.644 C36 A1EGK 36 A1EGK O37 O4 O 0 1 N N N N N N 18.828 -19.020 -31.832 -12.489 -3.305 0.008 O37 A1EGK 37 A1EGK C38 C31 C 0 1 N N N N N N 18.827 -19.491 -33.158 -12.679 -4.470 -0.796 C38 A1EGK 38 A1EGK H1 H1 H 0 1 N N N N N N 15.447 -28.574 -39.466 8.072 2.703 0.549 H1 A1EGK 39 A1EGK H2 H2 H 0 1 N N N N N N 16.138 -22.310 -35.396 1.347 4.429 0.456 H2 A1EGK 40 A1EGK H3 H3 H 0 1 N N N N N N 16.775 -24.997 -32.741 -0.975 3.203 0.032 H3 A1EGK 41 A1EGK H4 H4 H 0 1 N N N N N N 19.215 -24.840 -32.317 -2.589 -1.004 -1.011 H4 A1EGK 42 A1EGK H5 H5 H 0 1 N N N N N N 17.059 -21.297 -31.224 -2.784 3.194 -0.082 H5 A1EGK 43 A1EGK H6 H6 H 0 1 N N N N N N 19.036 -21.251 -27.742 -6.895 -0.329 0.884 H6 A1EGK 44 A1EGK H7 H7 H 0 1 N N N N N N 19.674 -22.082 -26.282 -6.976 1.407 1.268 H7 A1EGK 45 A1EGK H8 H8 H 0 1 N N N N N N 9.836 -27.489 -40.736 8.396 -3.050 -0.699 H8 A1EGK 46 A1EGK H9 H9 H 0 1 N N N N N N 13.691 -29.328 -40.861 9.729 0.897 0.262 H9 A1EGK 47 A1EGK H10 H10 H 0 1 N N N N N N 10.635 -25.933 -38.985 6.076 -2.319 -0.701 H10 A1EGK 48 A1EGK H11 H11 H 0 1 N N N N N N 11.409 -30.005 -43.799 10.058 -3.369 -1.181 H11 A1EGK 49 A1EGK H12 H12 H 0 1 N N N N N N 13.004 -29.591 -43.083 11.797 -3.039 -0.987 H12 A1EGK 50 A1EGK H13 H13 H 0 1 N N N N N N 10.012 -30.205 -40.427 11.810 -0.611 1.130 H13 A1EGK 51 A1EGK H14 H14 H 0 1 N N N N N N 9.471 -30.224 -42.140 12.507 -0.937 -0.475 H14 A1EGK 52 A1EGK H15 H15 H 0 1 N N N N N N 10.765 -31.344 -41.594 11.323 0.376 -0.268 H15 A1EGK 53 A1EGK H16 H16 H 0 1 N N N N N N 12.340 -27.182 -43.074 11.133 -4.789 0.591 H16 A1EGK 54 A1EGK H17 H17 H 0 1 N N N N N N 10.794 -27.628 -43.873 11.521 -3.307 1.496 H17 A1EGK 55 A1EGK H18 H18 H 0 1 N N N N N N 12.424 -26.989 -45.364 9.440 -4.253 2.189 H18 A1EGK 56 A1EGK H19 H19 H 0 1 N N N N N N 16.332 -27.061 -37.738 5.757 3.443 0.552 H19 A1EGK 57 A1EGK H20 H20 H 0 1 N N N N N N 12.512 -25.118 -37.488 4.415 -0.514 -0.419 H20 A1EGK 58 A1EGK H21 H21 H 0 1 N N N N N N 14.908 -23.270 -37.520 3.853 4.052 0.543 H21 A1EGK 59 A1EGK H22 H22 H 0 1 N N N N N N 17.553 -22.235 -33.789 -0.434 0.250 -0.587 H22 A1EGK 60 A1EGK H23 H23 H 0 1 N N N N N N 20.288 -24.844 -30.086 -5.043 -1.006 -1.162 H23 A1EGK 61 A1EGK H24 H24 H 0 1 N N N N N N 18.174 -21.369 -29.020 -5.231 3.044 -0.266 H24 A1EGK 62 A1EGK H25 H25 H 0 1 N N N N N N 19.509 -23.959 -27.531 -6.963 0.204 -1.537 H25 A1EGK 63 A1EGK H26 H26 H 0 1 N N N N N N 21.031 -23.382 -28.291 -7.043 1.940 -1.153 H26 A1EGK 64 A1EGK H27 H27 H 0 1 N N N N N N 21.664 -19.703 -26.100 -9.022 -0.683 2.042 H27 A1EGK 65 A1EGK H28 H28 H 0 1 N N N N N N 19.890 -19.861 -26.332 -9.102 1.053 2.426 H28 A1EGK 66 A1EGK H29 H29 H 0 1 N N N N N N 21.867 -18.238 -27.818 -11.369 0.129 2.418 H29 A1EGK 67 A1EGK H30 H30 H 0 1 N N N N N N 20.084 -18.060 -27.694 -11.179 1.218 1.022 H30 A1EGK 68 A1EGK H31 H31 H 0 1 N N N N N N 20.894 -17.433 -29.984 -13.140 -1.077 1.236 H31 A1EGK 69 A1EGK H32 H32 H 0 1 N N N N N N 19.232 -18.042 -29.681 -12.951 0.012 -0.159 H32 A1EGK 70 A1EGK H33 H33 H 0 1 N N N N N N 20.700 -19.804 -31.508 -13.895 -2.113 -0.924 H33 A1EGK 71 A1EGK H34 H34 H 0 1 N N N N N N 20.652 -18.117 -32.123 -12.231 -1.960 -1.539 H34 A1EGK 72 A1EGK H35 H35 H 0 1 N N N N N N 17.790 -19.643 -33.493 -13.729 -4.549 -1.079 H35 A1EGK 73 A1EGK H36 H36 H 0 1 N N N N N N 19.319 -18.753 -33.809 -12.066 -4.396 -1.694 H36 A1EGK 74 A1EGK H37 H37 H 0 1 N N N N N N 19.372 -20.445 -33.208 -12.389 -5.355 -0.229 H37 A1EGK 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EGK O11 C10 SING N N 1 A1EGK C10 C08 SING N N 2 A1EGK C08 N07 SING N N 3 A1EGK N07 C09 SING N N 4 A1EGK N07 C02 SING N N 5 A1EGK C02 C03 DOUB Y N 6 A1EGK C02 C01 SING Y N 7 A1EGK C03 C04 SING Y N 8 A1EGK C01 C06 DOUB Y N 9 A1EGK C04 C12 DOUB Y N 10 A1EGK C04 C05 SING Y N 11 A1EGK C06 C05 SING Y N 12 A1EGK C12 C13 SING Y N 13 A1EGK C05 C15 DOUB Y N 14 A1EGK C13 C14 DOUB Y N 15 A1EGK C15 C14 SING Y N 16 A1EGK C14 C16 SING N N 17 A1EGK C17 C16 DOUB Y N 18 A1EGK C17 C18 SING Y N 19 A1EGK C16 S20 SING Y N 20 A1EGK C18 C19 DOUB Y N 21 A1EGK S20 C19 SING Y N 22 A1EGK C19 C21 SING N N 23 A1EGK C21 C22 DOUB N E 24 A1EGK C38 O37 SING N N 25 A1EGK C22 C23 SING N N 26 A1EGK C23 C24 DOUB Y N 27 A1EGK C23 C28 SING Y N 28 A1EGK O37 C36 SING N N 29 A1EGK C24 C25 SING Y N 30 A1EGK C36 C35 SING N N 31 A1EGK C28 C27 DOUB Y N 32 A1EGK C25 N26 DOUB Y N 33 A1EGK C35 O34 SING N N 34 A1EGK C27 N26 SING Y N 35 A1EGK N26 C29 SING N N 36 A1EGK O34 C33 SING N N 37 A1EGK C29 C30 SING N N 38 A1EGK C33 C32 SING N N 39 A1EGK O31 C30 SING N N 40 A1EGK O31 C32 SING N N 41 A1EGK C12 H1 SING N N 42 A1EGK C18 H2 SING N N 43 A1EGK C21 H3 SING N N 44 A1EGK C24 H4 SING N N 45 A1EGK C28 H5 SING N N 46 A1EGK C30 H6 SING N N 47 A1EGK C30 H7 SING N N 48 A1EGK C01 H8 SING N N 49 A1EGK C03 H9 SING N N 50 A1EGK C06 H10 SING N N 51 A1EGK C08 H11 SING N N 52 A1EGK C08 H12 SING N N 53 A1EGK C09 H13 SING N N 54 A1EGK C09 H14 SING N N 55 A1EGK C09 H15 SING N N 56 A1EGK C10 H16 SING N N 57 A1EGK C10 H17 SING N N 58 A1EGK O11 H18 SING N N 59 A1EGK C13 H19 SING N N 60 A1EGK C15 H20 SING N N 61 A1EGK C17 H21 SING N N 62 A1EGK C22 H22 SING N N 63 A1EGK C25 H23 SING N N 64 A1EGK C27 H24 SING N N 65 A1EGK C29 H25 SING N N 66 A1EGK C29 H26 SING N N 67 A1EGK C32 H27 SING N N 68 A1EGK C32 H28 SING N N 69 A1EGK C33 H29 SING N N 70 A1EGK C33 H30 SING N N 71 A1EGK C35 H31 SING N N 72 A1EGK C35 H32 SING N N 73 A1EGK C36 H33 SING N N 74 A1EGK C36 H34 SING N N 75 A1EGK C38 H35 SING N N 76 A1EGK C38 H36 SING N N 77 A1EGK C38 H37 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EGK InChI InChI 1.06 "InChI=1S/C31H37N2O4S/c1-32(15-17-34)29-7-6-26-23-28(5-4-27(26)24-29)31-10-9-30(38-31)8-3-25-11-13-33(14-12-25)16-18-36-21-22-37-20-19-35-2/h3-14,23-24,34H,15-22H2,1-2H3/q+1" A1EGK InChIKey InChI 1.06 FMEDALDJBDBOTD-UHFFFAOYSA-N A1EGK SMILES_CANONICAL CACTVS 3.385 "COCCOCCOCC[n+]1ccc(/C=C/c2sc(cc2)c3ccc4cc(ccc4c3)N(C)CCO)cc1" A1EGK SMILES CACTVS 3.385 "COCCOCCOCC[n+]1ccc(C=Cc2sc(cc2)c3ccc4cc(ccc4c3)N(C)CCO)cc1" A1EGK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CCO)c1ccc2cc(ccc2c1)c3ccc(s3)/C=C/c4cc[n+](cc4)CCOCCOCCOC" A1EGK SMILES "OpenEye OEToolkits" 2.0.7 "CN(CCO)c1ccc2cc(ccc2c1)c3ccc(s3)C=Cc4cc[n+](cc4)CCOCCOCCOC" # _pdbx_chem_comp_identifier.comp_id A1EGK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[6-[5-[(~{E})-2-[1-[2-[2-(2-methoxyethoxy)ethoxy]ethyl]pyridin-1-ium-4-yl]ethenyl]thiophen-2-yl]naphthalen-2-yl]-methyl-amino]ethanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EGK "Create component" 2024-12-02 PDBC A1EGK "Initial release" 2025-06-11 RCSB #