data_A1EGR # _chem_comp.id A1EGR _chem_comp.name "3-[[(6E)-6-(6-chloranyl-2-methyl-indazol-5-yl)imino-3-[5-(2-methoxyethoxy)pyridin-3-yl]-2,4-bis(oxidanylidene)-1,3,5-triazinan-1-yl]methyl]-4-methyl-benzenecarbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H25 Cl N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-02 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 573.002 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EGR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KSJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EGR C01 C1 C 0 1 Y N N N N N -23.439 34.870 1.666 -3.339 -0.418 -0.931 C01 A1EGR 1 A1EGR C02 C2 C 0 1 Y N N N N N -24.843 34.864 1.629 -3.616 -0.863 0.345 C02 A1EGR 2 A1EGR C03 C3 C 0 1 Y N N N N N -25.537 36.070 1.904 -4.731 -1.699 0.559 C03 A1EGR 3 A1EGR C04 C4 C 0 1 Y N N N N N -24.860 37.236 2.206 -5.570 -2.075 -0.589 C04 A1EGR 4 A1EGR C05 C5 C 0 1 Y N N N N N -23.457 37.244 2.238 -5.232 -1.585 -1.870 C05 A1EGR 5 A1EGR C06 C6 C 0 1 Y N N N N N -22.778 36.061 1.977 -4.150 -0.785 -2.024 C06 A1EGR 6 A1EGR C07 C7 C 0 1 Y N N N N N -26.937 36.455 1.970 -5.288 -2.311 1.668 C07 A1EGR 7 A1EGR C10 C8 C 0 1 N N N N N N -28.202 38.527 2.448 -7.236 -3.791 2.132 C10 A1EGR 8 A1EGR C13 C9 C 0 1 N N N N N N -22.144 32.869 2.466 -1.084 0.066 -0.666 C13 A1EGR 9 A1EGR C15 C10 C 0 1 N N N N N N -20.955 31.060 3.251 1.188 0.569 -0.288 C15 A1EGR 10 A1EGR C17 C11 C 0 1 N N N N N N -22.029 32.480 4.671 0.320 -1.488 0.416 C17 A1EGR 11 A1EGR C21 C12 C 0 1 N N N N N N -21.018 31.396 0.871 -0.187 2.238 -1.416 C21 A1EGR 12 A1EGR C22 C13 C 0 1 Y N N N N N -19.805 32.162 0.316 -0.478 3.279 -0.366 C22 A1EGR 13 A1EGR C23 C14 C 0 1 Y N N N N N -19.240 31.792 -0.903 -0.577 4.612 -0.724 C23 A1EGR 14 A1EGR C24 C15 C 0 1 Y N N N N N -18.137 32.478 -1.408 -0.844 5.574 0.234 C24 A1EGR 15 A1EGR C25 C16 C 0 1 Y N N N N N -17.582 33.539 -0.692 -1.013 5.210 1.554 C25 A1EGR 16 A1EGR C26 C17 C 0 1 Y N N N N N -18.147 33.899 0.530 -0.915 3.866 1.922 C26 A1EGR 17 A1EGR C27 C18 C 0 1 Y N N N N N -19.247 33.216 1.024 -0.650 2.900 0.949 C27 A1EGR 18 A1EGR C28 C19 C 0 1 N N N N N N -17.561 35.055 1.324 -1.089 3.481 3.290 C28 A1EGR 19 A1EGR C29 C20 C 0 1 N N N N N N -19.841 30.626 -1.696 -0.394 5.018 -2.164 C29 A1EGR 20 A1EGR C30 C21 C 0 1 Y N N N N N -20.824 30.614 5.618 2.610 -0.990 0.801 C30 A1EGR 21 A1EGR C31 C22 C 0 1 Y N N N N N -19.517 30.678 6.077 2.780 -1.261 2.152 C31 A1EGR 22 A1EGR C33 C23 C 0 1 Y N N N N N -19.951 29.155 7.749 5.020 -1.707 1.853 C33 A1EGR 23 A1EGR C34 C24 C 0 1 Y N N N N N -21.277 29.025 7.339 4.932 -1.453 0.491 C34 A1EGR 24 A1EGR C35 C25 C 0 1 Y N N N N N -21.729 29.771 6.237 3.706 -1.087 -0.051 C35 A1EGR 25 A1EGR C38 C26 C 0 1 N N N N N N -23.281 27.704 7.367 7.253 -1.942 0.332 C38 A1EGR 26 A1EGR C39 C27 C 0 1 N N N N N N -23.707 26.373 8.012 8.370 -2.010 -0.712 C39 A1EGR 27 A1EGR C41 C28 C 0 1 N N N N N N -24.342 25.541 10.133 9.639 -0.657 -2.230 C41 A1EGR 28 A1EGR N08 N1 N 0 1 Y N N N N N -26.986 37.734 2.286 -6.364 -3.000 1.260 N08 A1EGR 29 A1EGR N09 N2 N 0 1 Y N N N N N -25.758 38.217 2.430 -6.531 -2.851 -0.121 N09 A1EGR 30 A1EGR N12 N3 N 0 1 N N N N N N -22.464 33.242 3.673 -0.897 -1.160 -0.059 N12 A1EGR 31 A1EGR N14 N4 N 0 1 N N N N N N -21.377 31.798 2.238 -0.015 0.932 -0.775 N14 A1EGR 32 A1EGR N16 N5 N 0 1 N N N N N N -21.273 31.406 4.464 1.351 -0.630 0.301 N16 A1EGR 33 A1EGR N19 N6 N 0 1 N N N N N N -22.627 33.688 1.380 -2.259 0.400 -1.139 N19 A1EGR 34 A1EGR N32 N7 N 0 1 Y N N N N N -19.119 29.969 7.136 3.960 -1.605 2.629 N32 A1EGR 35 A1EGR N37 N8 N 0 1 N N N N N N -17.120 35.912 1.924 -1.227 3.175 4.375 N37 A1EGR 36 A1EGR O18 O1 O 0 1 N N N N N N -22.358 32.850 5.953 0.489 -2.566 0.952 O18 A1EGR 37 A1EGR O20 O2 O 0 1 N N N N N N -20.182 29.942 3.051 2.132 1.329 -0.382 O20 A1EGR 38 A1EGR O36 O3 O 0 1 N N N N N N -22.130 28.151 8.026 6.031 -1.561 -0.302 O36 A1EGR 39 A1EGR O40 O4 O 0 1 N N N N N N -24.006 26.651 9.351 8.609 -0.704 -1.240 O40 A1EGR 40 A1EGR CL11 CL1 CL 0 0 N N N N N N -21.019 36.078 2.028 -3.753 -0.194 -3.608 CL11 A1EGR 41 A1EGR H021 H1 H 0 0 N N N N N N -25.384 33.959 1.396 -2.984 -0.573 1.173 H021 A1EGR 42 A1EGR H051 H2 H 0 0 N N N N N N -22.916 38.152 2.461 -5.835 -1.849 -2.726 H051 A1EGR 43 A1EGR H071 H3 H 0 0 N N N N N N -27.784 35.810 1.792 -4.921 -2.247 2.681 H071 A1EGR 44 A1EGR H102 H4 H 0 0 N N N N N N -27.934 39.563 2.702 -8.042 -3.160 2.508 H102 A1EGR 45 A1EGR H103 H5 H 0 0 N N N N N N -28.774 38.517 1.509 -7.659 -4.621 1.567 H103 A1EGR 46 A1EGR H101 H6 H 0 0 N N N N N N -28.814 38.098 3.255 -6.657 -4.179 2.970 H101 A1EGR 47 A1EGR H211 H7 H 0 0 N N N N N N -21.880 31.582 0.214 -1.017 2.191 -2.121 H211 A1EGR 48 A1EGR H212 H8 H 0 0 N N N N N N -20.783 30.321 0.872 0.726 2.505 -1.949 H212 A1EGR 49 A1EGR H241 H9 H 0 0 N N N N N N -17.710 32.187 -2.357 -0.920 6.613 -0.052 H241 A1EGR 50 A1EGR H251 H10 H 0 0 N N N N N N -16.727 34.073 -1.079 -1.221 5.962 2.301 H251 A1EGR 51 A1EGR H271 H11 H 0 0 N N N N N N -19.675 33.508 1.972 -0.576 1.859 1.226 H271 A1EGR 52 A1EGR H291 H12 H 0 0 N N N N N N -19.353 29.687 -1.395 -1.366 5.072 -2.652 H291 A1EGR 53 A1EGR H292 H13 H 0 0 N N N N N N -20.920 30.560 -1.491 0.090 5.994 -2.207 H292 A1EGR 54 A1EGR H293 H14 H 0 0 N N N N N N -19.682 30.794 -2.771 0.228 4.281 -2.672 H293 A1EGR 55 A1EGR H311 H15 H 0 0 N N N N N N -18.807 31.314 5.568 1.935 -1.189 2.821 H311 A1EGR 56 A1EGR H331 H16 H 0 0 N N N N N N -19.599 28.574 8.589 5.969 -1.992 2.282 H331 A1EGR 57 A1EGR H351 H17 H 0 0 N N N N N N -22.747 29.689 5.886 3.606 -0.883 -1.107 H351 A1EGR 58 A1EGR H381 H18 H 0 0 N N N N N N -23.065 27.550 6.300 7.132 -2.920 0.798 H381 A1EGR 59 A1EGR H382 H19 H 0 0 N N N N N N -24.086 28.446 7.475 7.513 -1.206 1.093 H382 A1EGR 60 A1EGR H391 H20 H 0 0 N N N N N N -24.595 25.971 7.501 9.281 -2.386 -0.246 H391 A1EGR 61 A1EGR H392 H21 H 0 0 N N N N N N -22.887 25.643 7.951 8.071 -2.680 -1.519 H392 A1EGR 62 A1EGR H413 H22 H 0 0 N N N N N N -24.557 25.868 11.161 9.367 -1.298 -3.068 H413 A1EGR 63 A1EGR H411 H23 H 0 0 N N N N N N -25.231 25.051 9.710 9.759 0.368 -2.580 H411 A1EGR 64 A1EGR H412 H24 H 0 0 N N N N N N -23.502 24.831 10.142 10.576 -1.005 -1.795 H412 A1EGR 65 A1EGR H1 H25 H 0 1 N N N N N N -23.011 34.062 3.840 -1.638 -1.780 0.026 H1 A1EGR 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EGR C29 C23 SING N N 1 A1EGR C24 C23 DOUB Y N 2 A1EGR C24 C25 SING Y N 3 A1EGR C23 C22 SING Y N 4 A1EGR C25 C26 DOUB Y N 5 A1EGR C22 C21 SING N N 6 A1EGR C22 C27 DOUB Y N 7 A1EGR C26 C27 SING Y N 8 A1EGR C26 C28 SING N N 9 A1EGR C21 N14 SING N N 10 A1EGR C28 N37 TRIP N N 11 A1EGR N19 C01 SING N N 12 A1EGR N19 C13 DOUB N N 13 A1EGR C02 C01 DOUB Y N 14 A1EGR C02 C03 SING Y N 15 A1EGR C01 C06 SING Y N 16 A1EGR C03 C07 DOUB Y N 17 A1EGR C03 C04 SING Y N 18 A1EGR C07 N08 SING Y N 19 A1EGR C06 CL11 SING N N 20 A1EGR C06 C05 DOUB Y N 21 A1EGR C04 C05 SING Y N 22 A1EGR C04 N09 DOUB Y N 23 A1EGR N14 C13 SING N N 24 A1EGR N14 C15 SING N N 25 A1EGR N08 N09 SING Y N 26 A1EGR N08 C10 SING N N 27 A1EGR C13 N12 SING N N 28 A1EGR O20 C15 DOUB N N 29 A1EGR C15 N16 SING N N 30 A1EGR N12 C17 SING N N 31 A1EGR N16 C17 SING N N 32 A1EGR N16 C30 SING N N 33 A1EGR C17 O18 DOUB N N 34 A1EGR C30 C31 DOUB Y N 35 A1EGR C30 C35 SING Y N 36 A1EGR C31 N32 SING Y N 37 A1EGR C35 C34 DOUB Y N 38 A1EGR N32 C33 DOUB Y N 39 A1EGR C34 C33 SING Y N 40 A1EGR C34 O36 SING N N 41 A1EGR C38 C39 SING N N 42 A1EGR C38 O36 SING N N 43 A1EGR C39 O40 SING N N 44 A1EGR O40 C41 SING N N 45 A1EGR C02 H021 SING N N 46 A1EGR C05 H051 SING N N 47 A1EGR C07 H071 SING N N 48 A1EGR C10 H102 SING N N 49 A1EGR C10 H103 SING N N 50 A1EGR C10 H101 SING N N 51 A1EGR C21 H211 SING N N 52 A1EGR C21 H212 SING N N 53 A1EGR C24 H241 SING N N 54 A1EGR C25 H251 SING N N 55 A1EGR C27 H271 SING N N 56 A1EGR C29 H291 SING N N 57 A1EGR C29 H292 SING N N 58 A1EGR C29 H293 SING N N 59 A1EGR C31 H311 SING N N 60 A1EGR C33 H331 SING N N 61 A1EGR C35 H351 SING N N 62 A1EGR C38 H381 SING N N 63 A1EGR C38 H382 SING N N 64 A1EGR C39 H391 SING N N 65 A1EGR C39 H392 SING N N 66 A1EGR C41 H413 SING N N 67 A1EGR C41 H411 SING N N 68 A1EGR C41 H412 SING N N 69 A1EGR N12 H1 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EGR InChI InChI 1.06 "InChI=1S/C28H25ClN8O4/c1-17-4-5-18(12-30)8-19(17)16-36-26(32-25-9-20-15-35(2)34-24(20)11-23(25)29)33-27(38)37(28(36)39)21-10-22(14-31-13-21)41-7-6-40-3/h4-5,8-11,13-15H,6-7,16H2,1-3H3,(H,32,33,38)" A1EGR InChIKey InChI 1.06 PAUITMPCLCEKRE-UHFFFAOYSA-N A1EGR SMILES_CANONICAL CACTVS 3.385 "COCCOc1cncc(c1)N2C(=O)NC(=Nc3cc4cn(C)nc4cc3Cl)N(Cc5cc(ccc5C)C#N)C2=O" A1EGR SMILES CACTVS 3.385 "COCCOc1cncc(c1)N2C(=O)NC(=Nc3cc4cn(C)nc4cc3Cl)N(Cc5cc(ccc5C)C#N)C2=O" A1EGR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1CN2/C(=N/c3cc4cn(nc4cc3Cl)C)/NC(=O)N(C2=O)c5cc(cnc5)OCCOC)C#N" A1EGR SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1CN2C(=Nc3cc4cn(nc4cc3Cl)C)NC(=O)N(C2=O)c5cc(cnc5)OCCOC)C#N" # _pdbx_chem_comp_identifier.comp_id A1EGR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[(6~{E})-6-(6-chloranyl-2-methyl-indazol-5-yl)imino-3-[5-(2-methoxyethoxy)pyridin-3-yl]-2,4-bis(oxidanylidene)-1,3,5-triazinan-1-yl]methyl]-4-methyl-benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EGR "Create component" 2024-12-02 PDBC A1EGR "Initial release" 2025-04-02 RCSB #