data_A1EHX # _chem_comp.id A1EHX _chem_comp.name "[9-[5-[2-[4-[[2,4-bis(azanyl)pyrimidin-5-yl]methyl]-2,6-dimethoxy-phenoxy]ethylcarbamoyl]-2-carboxy-phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H42 N7 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2024-12-13 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 732.804 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EHX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KZ4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EHX C01 C1 C 0 1 Y N N N N N 10.274 49.590 15.588 10.226 2.888 -0.893 C01 A1EHX 1 A1EHX C02 C2 C 0 1 Y N N N N N 8.755 48.383 14.330 9.303 1.087 -1.997 C02 A1EHX 2 A1EHX C03 C3 C 0 1 Y N N N N N 9.631 48.305 13.262 9.431 0.327 -0.851 C03 A1EHX 3 A1EHX C04 C4 C 0 1 Y N N N N N 10.861 48.911 13.485 9.974 0.925 0.288 C04 A1EHX 4 A1EHX C05 C5 C 0 1 N N N N N N 9.318 47.631 11.945 8.994 -1.115 -0.829 C05 A1EHX 5 A1EHX C06 C6 C 0 1 Y N N N N N 7.953 46.993 11.856 7.588 -1.206 -0.295 C06 A1EHX 6 A1EHX C07 C7 C 0 1 Y N N N N N 7.914 45.597 11.922 6.515 -1.133 -1.163 C07 A1EHX 7 A1EHX C08 C8 C 0 1 Y N N N N N 6.688 44.936 11.841 5.219 -1.217 -0.675 C08 A1EHX 8 A1EHX C09 C9 C 0 1 Y N N N N N 5.511 45.654 11.705 5.001 -1.373 0.688 C09 A1EHX 9 A1EHX C10 C10 C 0 1 Y N N N N N 5.529 47.044 11.620 6.083 -1.446 1.558 C10 A1EHX 10 A1EHX C11 C11 C 0 1 Y N N N N N 6.756 47.729 11.699 7.375 -1.367 1.061 C11 A1EHX 11 A1EHX C12 C12 C 0 1 N N N N N N 3.670 44.839 12.834 3.153 -2.759 1.260 C12 A1EHX 12 A1EHX C13 C13 C 0 1 N N N N N N 2.362 44.061 12.646 1.734 -2.651 1.821 C13 A1EHX 13 A1EHX C14 C14 C 0 1 N N N N N N 0.692 44.882 14.221 -0.409 -1.698 1.159 C14 A1EHX 14 A1EHX C15 C15 C 0 1 Y N N N N N -6.782 45.436 17.548 -7.704 -2.881 -0.418 C15 A1EHX 15 A1EHX C16 C16 C 0 1 Y N N N N N -5.771 44.472 17.465 -6.364 -3.140 -0.715 C16 A1EHX 16 A1EHX C17 C17 C 0 1 Y N N N N N -4.433 44.857 17.300 -5.433 -2.149 -0.613 C17 A1EHX 17 A1EHX C18 C18 C 0 1 Y N N N N N -4.082 46.212 17.214 -5.821 -0.864 -0.210 C18 A1EHX 18 A1EHX C19 C19 C 0 1 Y N N N N N -5.110 47.158 17.310 -7.170 -0.595 0.091 C19 A1EHX 19 A1EHX C20 C20 C 0 1 Y N N N N N -6.441 46.779 17.471 -8.104 -1.614 -0.017 C20 A1EHX 20 A1EHX C21 C21 C 0 1 N N N N N N -2.693 46.682 17.048 -4.827 0.210 -0.098 C21 A1EHX 21 A1EHX C22 C22 C 0 1 N N N N N N -2.487 48.032 16.969 -5.277 1.478 0.312 C22 A1EHX 22 A1EHX C23 C23 C 0 1 N N N N N N -3.603 48.969 17.067 -6.698 1.666 0.604 C23 A1EHX 23 A1EHX C24 C24 C 0 1 N N N N N N -1.152 48.608 16.807 -4.374 2.555 0.440 C24 A1EHX 24 A1EHX C25 C25 C 0 1 N N N N N N -0.954 49.938 16.735 -4.822 3.769 0.835 C25 A1EHX 25 A1EHX C26 C26 C 0 1 N N N N N N -2.073 50.938 16.838 -6.241 3.965 1.129 C26 A1EHX 26 A1EHX C27 C27 C 0 1 N N N N N N -3.413 50.296 17.004 -7.146 2.891 1.002 C27 A1EHX 27 A1EHX C28 C28 C 0 1 Y N N N N N -1.659 45.800 16.931 -3.405 -0.032 -0.403 C28 A1EHX 28 A1EHX C29 C29 C 0 1 Y N N N N N -1.216 44.946 17.967 -2.848 0.447 -1.606 C29 A1EHX 29 A1EHX C30 C30 C 0 1 N N N N N N -1.787 44.921 19.208 -3.688 1.195 -2.566 C30 A1EHX 30 A1EHX C31 C31 C 0 1 Y N N N N N -0.997 45.735 15.685 -2.604 -0.732 0.498 C31 A1EHX 31 A1EHX C32 C32 C 0 1 Y N N N N N 0.079 44.875 15.443 -1.262 -0.956 0.203 C32 A1EHX 32 A1EHX C33 C33 C 0 1 Y N N N N N 0.515 44.041 16.480 -0.718 -0.483 -0.994 C33 A1EHX 33 A1EHX C34 C34 C 0 1 Y N N N N N -0.137 44.078 17.724 -1.504 0.214 -1.889 C34 A1EHX 34 A1EHX C35 C35 C 0 1 N N N N N N -8.370 43.710 17.985 -8.228 -5.236 -0.958 C35 A1EHX 35 A1EHX C36 C36 C 0 1 N N N N N N -9.060 46.133 17.633 -10.051 -3.633 -0.220 C36 A1EHX 36 A1EHX C37 C37 C 0 1 N N N N N N -0.532 52.808 16.976 -5.739 6.274 1.648 C37 A1EHX 37 A1EHX C38 C38 C 0 1 N N N N N N -3.070 53.130 16.511 -8.099 5.356 1.811 C38 A1EHX 38 A1EHX C39 C39 C 0 1 N N N N N N 7.809 42.915 12.048 4.463 -0.982 -2.918 C39 A1EHX 39 A1EHX C40 C40 C 0 1 N N N N N N 4.390 49.036 11.219 7.033 -1.667 3.727 C40 A1EHX 40 A1EHX N01 N1 N 0 1 Y N N N N N 11.198 49.571 14.616 10.362 2.195 0.227 N01 A1EHX 41 A1EHX N02 N2 N 0 1 Y N N N N N 9.052 49.025 15.497 9.705 2.349 -1.986 N02 A1EHX 42 A1EHX N03 N3 N 0 1 N N N N N N 10.580 50.216 16.665 10.634 4.211 -0.922 N03 A1EHX 43 A1EHX N04 N4 N 0 1 N N N N N N 11.750 48.883 12.566 10.121 0.201 1.460 N04 A1EHX 44 A1EHX N05 N5 N 0 1 N N N N N N 1.711 44.013 13.940 0.890 -1.917 0.874 N05 A1EHX 45 A1EHX N06 N6 N 0 1 N N N N N N -8.004 45.109 17.709 -8.644 -3.898 -0.530 N06 A1EHX 46 A1EHX N07 N7 N 1 1 N N N N N N -1.900 52.226 16.776 -6.677 5.157 1.516 N07 A1EHX 47 A1EHX O01 O1 O 0 1 N N N N N N 4.344 44.954 11.611 3.731 -1.455 1.171 O01 A1EHX 48 A1EHX O02 O2 O 0 1 N N N N N N 0.365 45.682 13.368 -0.881 -2.110 2.200 O02 A1EHX 49 A1EHX O03 O3 O 0 1 N N N N N N -4.887 48.503 17.228 -7.563 0.636 0.482 O03 A1EHX 50 A1EHX O04 O4 O 0 1 N N N N N N -1.989 43.828 19.781 -3.154 1.653 -3.715 O04 A1EHX 51 A1EHX O05 O5 O 0 1 N N N N N N -2.095 45.976 19.809 -4.859 1.398 -2.318 O05 A1EHX 52 A1EHX O06 O6 O 0 1 N N N N N N 6.581 43.585 11.900 4.164 -1.144 -1.530 O06 A1EHX 53 A1EHX O07 O7 O 0 1 N N N N N N 4.320 47.664 11.490 5.874 -1.600 2.893 O07 A1EHX 54 A1EHX H01 H1 H 0 1 N N N N N N 7.788 47.912 14.235 8.887 0.655 -2.895 H01 A1EHX 55 A1EHX H06 H2 H 0 1 N N N N N N 9.392 48.388 11.150 9.025 -1.519 -1.841 H06 A1EHX 56 A1EHX H07 H3 H 0 1 N N N N N N 10.071 46.847 11.777 9.664 -1.689 -0.189 H07 A1EHX 57 A1EHX H08 H4 H 0 1 N N N N N N 8.828 45.033 12.035 6.685 -1.012 -2.222 H08 A1EHX 58 A1EHX H09 H5 H 0 1 N N N N N N 6.783 48.807 11.640 8.217 -1.428 1.736 H09 A1EHX 59 A1EHX H11 H6 H 0 1 N N N N N N 4.310 44.306 13.553 3.758 -3.380 1.921 H11 A1EHX 60 A1EHX H10 H7 H 0 1 N N N N N N 3.443 45.844 13.220 3.119 -3.210 0.268 H10 A1EHX 61 A1EHX H12 H8 H 0 1 N N N N N N 1.718 44.575 11.917 1.326 -3.650 1.972 H12 A1EHX 62 A1EHX H13 H9 H 0 1 N N N N N N 2.576 43.042 12.292 1.758 -2.120 2.772 H13 A1EHX 63 A1EHX H15 H10 H 0 1 N N N N N N -6.023 43.424 17.529 -6.064 -4.129 -1.026 H15 A1EHX 64 A1EHX H16 H11 H 0 1 N N N N N N -3.664 44.101 17.238 -4.398 -2.354 -0.843 H16 A1EHX 65 A1EHX H17 H12 H 0 1 N N N N N N -7.211 47.534 17.536 -9.142 -1.422 0.211 H17 A1EHX 66 A1EHX H18 H13 H 0 1 N N N N N N -0.300 47.947 16.743 -3.326 2.410 0.224 H18 A1EHX 67 A1EHX H19 H14 H 0 1 N N N N N N 0.053 50.303 16.597 -4.131 4.594 0.934 H19 A1EHX 68 A1EHX H20 H15 H 0 1 N N N N N N -4.279 50.938 17.078 -8.194 3.039 1.220 H20 A1EHX 69 A1EHX H21 H16 H 0 1 N N N N N N -1.336 46.377 14.885 -3.023 -1.098 1.424 H21 A1EHX 70 A1EHX H22 H17 H 0 1 N N N N N N 1.349 43.372 16.324 0.323 -0.661 -1.218 H22 A1EHX 71 A1EHX H23 H18 H 0 1 N N N N N N 0.199 43.423 18.514 -1.076 0.581 -2.810 H23 A1EHX 72 A1EHX H24 H19 H 0 1 N N N N N N -9.462 43.630 18.092 -7.496 -5.631 -0.255 H24 A1EHX 73 A1EHX H25 H20 H 0 1 N N N N N N -8.035 43.073 17.153 -9.097 -5.895 -0.987 H25 A1EHX 74 A1EHX H26 H21 H 0 1 N N N N N N -7.886 43.381 18.916 -7.784 -5.178 -1.952 H26 A1EHX 75 A1EHX H29 H22 H 0 1 N N N N N N -10.041 45.662 17.797 -10.567 -3.305 -1.123 H29 A1EHX 76 A1EHX H28 H23 H 0 1 N N N N N N -8.887 46.896 18.406 -10.519 -4.543 0.155 H28 A1EHX 77 A1EHX H27 H24 H 0 1 N N N N N N -9.041 46.606 16.640 -10.115 -2.853 0.538 H27 A1EHX 78 A1EHX H30 H25 H 0 1 N N N N N N -0.583 53.903 16.888 -5.673 6.808 0.700 H30 A1EHX 79 A1EHX H32 H26 H 0 1 N N N N N N -0.161 52.537 17.975 -6.090 6.954 2.425 H32 A1EHX 80 A1EHX H31 H27 H 0 1 N N N N N N 0.151 52.410 16.211 -4.754 5.891 1.918 H31 A1EHX 81 A1EHX H33 H28 H 0 1 N N N N N N -2.730 54.176 16.495 -8.284 5.148 2.865 H33 A1EHX 82 A1EHX H34 H29 H 0 1 N N N N N N -3.517 52.875 15.539 -8.375 6.387 1.590 H34 A1EHX 83 A1EHX H35 H30 H 0 1 N N N N N N -3.820 53.001 17.305 -8.695 4.681 1.197 H35 A1EHX 84 A1EHX H36 H31 H 0 1 N N N N N N 7.633 41.830 12.087 5.022 -0.058 -3.063 H36 A1EHX 85 A1EHX H38 H32 H 0 1 N N N N N N 8.460 43.150 11.193 5.061 -1.826 -3.261 H38 A1EHX 86 A1EHX H37 H33 H 0 1 N N N N N N 8.295 43.241 12.980 3.534 -0.939 -3.487 H37 A1EHX 87 A1EHX H40 H34 H 0 1 N N N N N N 3.373 49.445 11.132 6.726 -1.790 4.766 H40 A1EHX 88 A1EHX H39 H35 H 0 1 N N N N N N 4.921 49.545 12.037 7.648 -2.516 3.427 H39 A1EHX 89 A1EHX H41 H36 H 0 1 N N N N N N 4.932 49.196 10.275 7.608 -0.747 3.624 H41 A1EHX 90 A1EHX H03 H37 H 0 1 N N N N N N 11.501 50.596 16.580 10.537 4.731 -1.735 H03 A1EHX 91 A1EHX H02 H38 H 0 1 N N N N N N 9.926 50.957 16.817 11.017 4.617 -0.129 H02 A1EHX 92 A1EHX H05 H39 H 0 1 N N N N N N 12.563 49.378 12.873 9.846 -0.728 1.494 H05 A1EHX 93 A1EHX H04 H40 H 0 1 N N N N N N 11.993 47.934 12.366 10.499 0.624 2.247 H04 A1EHX 94 A1EHX H14 H41 H 0 1 N N N N N N 2.006 43.347 14.625 1.266 -1.588 0.043 H14 A1EHX 95 A1EHX H1 H42 H 0 1 N N N N N N -2.369 43.984 20.637 -3.742 2.136 -4.310 H1 A1EHX 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EHX N01 C01 DOUB Y N 1 A1EHX N01 C04 SING Y N 2 A1EHX C01 N02 SING Y N 3 A1EHX C01 N03 SING N N 4 A1EHX N02 C02 DOUB Y N 5 A1EHX C02 C03 SING Y N 6 A1EHX C03 C04 DOUB Y N 7 A1EHX C03 C05 SING N N 8 A1EHX C04 N04 SING N N 9 A1EHX C05 C06 SING N N 10 A1EHX C06 C07 DOUB Y N 11 A1EHX C06 C11 SING Y N 12 A1EHX C07 C08 SING Y N 13 A1EHX C08 C09 DOUB Y N 14 A1EHX C08 O06 SING N N 15 A1EHX C09 C10 SING Y N 16 A1EHX C09 O01 SING N N 17 A1EHX C10 C11 DOUB Y N 18 A1EHX C10 O07 SING N N 19 A1EHX O01 C12 SING N N 20 A1EHX C12 C13 SING N N 21 A1EHX C13 N05 SING N N 22 A1EHX N05 C14 SING N N 23 A1EHX C14 O02 DOUB N N 24 A1EHX C14 C32 SING N N 25 A1EHX C15 C16 DOUB Y N 26 A1EHX C15 C20 SING Y N 27 A1EHX C15 N06 SING N N 28 A1EHX C16 C17 SING Y N 29 A1EHX C17 C18 DOUB Y N 30 A1EHX C18 C19 SING Y N 31 A1EHX C18 C21 SING N N 32 A1EHX C19 C20 DOUB Y N 33 A1EHX C19 O03 SING N N 34 A1EHX C21 C22 DOUB N N 35 A1EHX C21 C28 SING N N 36 A1EHX C22 C23 SING N N 37 A1EHX C22 C24 SING N N 38 A1EHX C23 O03 SING N N 39 A1EHX C23 C27 DOUB N N 40 A1EHX C24 C25 DOUB N N 41 A1EHX C25 C26 SING N N 42 A1EHX C26 C27 SING N N 43 A1EHX C26 N07 DOUB N N 44 A1EHX C28 C29 DOUB Y N 45 A1EHX C28 C31 SING Y N 46 A1EHX C29 C30 SING N N 47 A1EHX C29 C34 SING Y N 48 A1EHX C30 O04 SING N N 49 A1EHX C30 O05 DOUB N N 50 A1EHX C31 C32 DOUB Y N 51 A1EHX C32 C33 SING Y N 52 A1EHX C33 C34 DOUB Y N 53 A1EHX N06 C35 SING N N 54 A1EHX N06 C36 SING N N 55 A1EHX N07 C37 SING N N 56 A1EHX N07 C38 SING N N 57 A1EHX O06 C39 SING N N 58 A1EHX O07 C40 SING N N 59 A1EHX C02 H01 SING N N 60 A1EHX C05 H06 SING N N 61 A1EHX C05 H07 SING N N 62 A1EHX C07 H08 SING N N 63 A1EHX C11 H09 SING N N 64 A1EHX C12 H11 SING N N 65 A1EHX C12 H10 SING N N 66 A1EHX C13 H12 SING N N 67 A1EHX C13 H13 SING N N 68 A1EHX C16 H15 SING N N 69 A1EHX C17 H16 SING N N 70 A1EHX C20 H17 SING N N 71 A1EHX C24 H18 SING N N 72 A1EHX C25 H19 SING N N 73 A1EHX C27 H20 SING N N 74 A1EHX C31 H21 SING N N 75 A1EHX C33 H22 SING N N 76 A1EHX C34 H23 SING N N 77 A1EHX C35 H24 SING N N 78 A1EHX C35 H25 SING N N 79 A1EHX C35 H26 SING N N 80 A1EHX C36 H29 SING N N 81 A1EHX C36 H28 SING N N 82 A1EHX C36 H27 SING N N 83 A1EHX C37 H30 SING N N 84 A1EHX C37 H32 SING N N 85 A1EHX C37 H31 SING N N 86 A1EHX C38 H33 SING N N 87 A1EHX C38 H34 SING N N 88 A1EHX C38 H35 SING N N 89 A1EHX C39 H36 SING N N 90 A1EHX C39 H38 SING N N 91 A1EHX C39 H37 SING N N 92 A1EHX C40 H40 SING N N 93 A1EHX C40 H39 SING N N 94 A1EHX C40 H41 SING N N 95 A1EHX N03 H03 SING N N 96 A1EHX N03 H02 SING N N 97 A1EHX N04 H05 SING N N 98 A1EHX N04 H04 SING N N 99 A1EHX N05 H14 SING N N 100 A1EHX O04 H1 SING N N 101 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EHX InChI InChI 1.06 "InChI=1S/C40H41N7O7/c1-46(2)25-8-11-28-31(19-25)54-32-20-26(47(3)4)9-12-29(32)35(28)30-18-23(7-10-27(30)39(49)50)38(48)43-13-14-53-36-33(51-5)16-22(17-34(36)52-6)15-24-21-44-40(42)45-37(24)41/h7-12,16-21H,13-15H2,1-6H3,(H5-,41,42,43,44,45,48,49,50)/p+1" A1EHX InChIKey InChI 1.06 JYRINKWAGFHPTL-UHFFFAOYSA-O A1EHX SMILES_CANONICAL CACTVS 3.385 "COc1cc(Cc2cnc(N)nc2N)cc(OC)c1OCCNC(=O)c3ccc(C(O)=O)c(c3)C4=C5C=CC(C=C5Oc6cc(ccc46)N(C)C)=[N+](C)C" A1EHX SMILES CACTVS 3.385 "COc1cc(Cc2cnc(N)nc2N)cc(OC)c1OCCNC(=O)c3ccc(C(O)=O)c(c3)C4=C5C=CC(C=C5Oc6cc(ccc46)N(C)C)=[N+](C)C" A1EHX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)O)C(=O)NCCOc5c(cc(cc5OC)Cc6cnc(nc6N)N)OC" A1EHX SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)O)C(=O)NCCOc5c(cc(cc5OC)Cc6cnc(nc6N)N)OC" # _pdbx_chem_comp_identifier.comp_id A1EHX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[9-[5-[2-[4-[[2,4-bis(azanyl)pyrimidin-5-yl]methyl]-2,6-dimethoxy-phenoxy]ethylcarbamoyl]-2-carboxy-phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EHX "Create component" 2024-12-13 PDBC A1EHX "Modify synonyms" 2024-12-15 PDBC A1EHX "Initial release" 2025-01-22 RCSB #