data_A1EJB # _chem_comp.id A1EJB _chem_comp.name "(S)-2,2'-(5,5,9,9-tetraoxido-2,12,17-trioxo-11-oxa-5,9-dithia-3,6,8-triaza-1(2,1)-pyrrolidina-7(1,4)-naphthalena-4(1,4),10(1,3)-dibenzenacycloheptadecaphane-6,8-diyl)diacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H38 N6 O10 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-13 _chem_comp.pdbx_modified_date 2025-12-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 790.862 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EJB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9L8Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EJB C1 C1 C 0 1 Y N N N N N -19.824 -12.340 -11.839 2.057 0.180 0.322 C1 A1EJB 1 A1EJB C10 C2 C 0 1 N N N N N N -21.852 -14.688 -6.121 -0.458 -4.431 -0.175 C10 A1EJB 2 A1EJB C11 C3 C 0 1 N N N N N N -23.247 -14.671 -5.468 -1.900 -4.874 -0.204 C11 A1EJB 3 A1EJB C12 C4 C 0 1 N N N N N N -23.114 -13.975 -4.104 -2.804 -3.709 -0.609 C12 A1EJB 4 A1EJB C13 C5 C 0 1 N N N N N N -24.221 -12.945 -3.825 -4.026 -3.669 0.311 C13 A1EJB 5 A1EJB C14 C6 C 0 1 N N N N N N -24.255 -11.808 -4.854 -5.295 -3.481 -0.521 C14 A1EJB 6 A1EJB C15 C7 C 0 1 N N N N N N -25.398 -12.126 -5.824 -5.626 -2.015 -0.618 C15 A1EJB 7 A1EJB C16 C8 C 0 1 N N S N N N -24.437 -10.899 -7.982 -7.282 -0.160 -0.351 C16 A1EJB 8 A1EJB C17 C9 C 0 1 N N N N N N -24.757 -9.490 -7.501 -6.171 0.697 0.196 C17 A1EJB 9 A1EJB C18 C10 C 0 1 Y N N N N N -23.035 -8.237 -8.963 -4.356 2.135 -0.197 C18 A1EJB 10 A1EJB C19 C11 C 0 1 Y N N N N N -23.215 -7.364 -10.016 -3.529 2.840 -1.059 C19 A1EJB 11 A1EJB C2 C12 C 0 1 Y N N N N N -18.549 -12.719 -12.203 3.400 0.376 0.091 C2 A1EJB 12 A1EJB C20 C13 C 0 1 Y N N N N N -22.237 -7.227 -10.976 -2.322 3.339 -0.611 C20 A1EJB 13 A1EJB C21 C14 C 0 1 Y N N N N N -21.047 -7.924 -10.857 -1.943 3.145 0.706 C21 A1EJB 14 A1EJB C22 C15 C 0 1 Y N N N N N -20.849 -8.787 -9.792 -2.776 2.459 1.572 C22 A1EJB 15 A1EJB C23 C16 C 0 1 Y N N N N N -21.842 -8.935 -8.825 -3.980 1.944 1.125 C23 A1EJB 16 A1EJB C24 C17 C 0 1 N N N N N N -21.289 -8.882 -14.174 0.702 4.539 -1.079 C24 A1EJB 17 A1EJB C25 C18 C 0 1 N N N N N N -21.008 -9.158 -15.657 0.326 3.814 -2.346 C25 A1EJB 18 A1EJB C26 C19 C 0 1 Y N N N N N -19.553 -10.262 -12.919 1.611 2.536 0.087 C26 A1EJB 19 A1EJB C27 C20 C 0 1 Y N N N N N -18.240 -10.595 -13.299 2.990 2.778 -0.089 C27 A1EJB 20 A1EJB C28 C21 C 0 1 Y N N N N N -17.434 -9.719 -14.034 3.479 4.086 -0.241 C28 A1EJB 21 A1EJB C29 C22 C 0 1 Y N N N N N -16.150 -10.104 -14.394 4.811 4.289 -0.437 C29 A1EJB 22 A1EJB C3 C23 C 0 1 N N N N N N -18.519 -15.274 -12.425 5.441 -0.788 -0.814 C3 A1EJB 23 A1EJB C30 C24 C 0 1 Y N N N N N -15.662 -11.347 -14.015 5.694 3.212 -0.484 C30 A1EJB 24 A1EJB C31 C25 C 0 1 Y N N N N N -16.450 -12.225 -13.298 5.257 1.932 -0.326 C31 A1EJB 25 A1EJB C32 C26 C 0 1 Y N N N N N -17.740 -11.856 -12.936 3.891 1.683 -0.112 C32 A1EJB 26 A1EJB C33 C27 C 0 1 Y N N N N N -20.319 -11.129 -12.182 1.166 1.252 0.306 C33 A1EJB 27 A1EJB C34 C28 C 0 1 N N N N N N -24.665 -11.132 -9.446 -8.533 -0.039 0.525 C34 A1EJB 28 A1EJB C35 C29 C 0 1 N N N N N N -26.018 -11.781 -9.560 -9.092 -1.468 0.632 C35 A1EJB 29 A1EJB C36 C30 C 0 1 N N N N N N -26.540 -12.048 -8.133 -8.007 -2.393 0.064 C36 A1EJB 30 A1EJB C37 C31 C 0 1 Y N N N N N -19.654 -14.321 -8.775 2.144 -3.723 0.088 C37 A1EJB 31 A1EJB C4 C32 C 0 1 N N N N N N -17.404 -15.928 -13.235 6.707 -0.644 -0.009 C4 A1EJB 32 A1EJB C5 C33 C 0 1 Y N N N N N -18.672 -13.456 -9.230 3.477 -3.378 0.209 C5 A1EJB 33 A1EJB C6 C34 C 0 1 Y N N N N N -18.750 -12.109 -8.944 4.448 -4.151 -0.399 C6 A1EJB 34 A1EJB C7 C35 C 0 1 Y N N N N N -19.798 -11.625 -8.172 4.087 -5.266 -1.137 C7 A1EJB 35 A1EJB C8 C36 C 0 1 Y N N N N N -20.770 -12.495 -7.698 2.756 -5.609 -1.266 C8 A1EJB 36 A1EJB C9 C37 C 0 1 Y N N N N N -20.693 -13.844 -7.998 1.779 -4.837 -0.648 C9 A1EJB 37 A1EJB N1 N1 N 0 1 N N N N N N -18.133 -14.039 -11.759 4.283 -0.728 0.081 N1 A1EJB 38 A1EJB N2 N2 N 0 1 N N N N N N -17.692 -17.170 -13.915 7.905 -0.807 -0.602 N2 A1EJB 39 A1EJB N3 N3 N 0 1 N N N N N N -25.412 -11.711 -7.216 -6.863 -1.570 -0.329 N3 A1EJB 40 A1EJB N4 N4 N 0 1 N N N N N N -24.094 -8.294 -7.975 -5.565 1.592 -0.639 N4 A1EJB 41 A1EJB N5 N5 N 0 1 N N N N N N -20.202 -9.006 -13.204 0.695 3.597 0.043 N5 A1EJB 42 A1EJB N6 N6 N 0 1 N N N N N N -20.402 -8.110 -16.469 0.365 4.460 -3.528 N6 A1EJB 43 A1EJB O1 O1 O 0 1 N N N N N N -16.319 -15.452 -13.317 6.646 -0.381 1.174 O1 A1EJB 44 A1EJB O10 O2 O 0 1 N N N N N N -21.332 -10.195 -16.142 -0.012 2.650 -2.302 O10 A1EJB 45 A1EJB O2 O3 O 0 1 N N N N N N -16.240 -13.060 -10.368 2.756 -1.559 1.851 O2 A1EJB 46 A1EJB O3 O4 O 0 1 N N N N N N -16.886 -15.406 -9.962 5.145 -2.288 1.806 O3 A1EJB 47 A1EJB O4 O5 O 0 1 N N N N N N -21.678 -14.718 -7.514 0.475 -5.192 -0.767 O4 A1EJB 48 A1EJB O5 O6 O 0 1 N N N N N N -20.887 -14.667 -5.433 -0.147 -3.401 0.374 O5 A1EJB 49 A1EJB O6 O7 O 0 1 N N N N N N -26.315 -12.784 -5.459 -4.769 -1.228 -0.958 O6 A1EJB 50 A1EJB O7 O8 O 0 1 N N N N N N -25.599 -9.366 -6.669 -5.821 0.595 1.353 O7 A1EJB 51 A1EJB O8 O9 O 0 1 N N N N N N -20.138 -6.456 -12.907 -0.575 5.167 1.464 O8 A1EJB 52 A1EJB O9 O10 O 0 1 N N N N N N -18.443 -7.751 -11.693 0.027 2.895 2.314 O9 A1EJB 53 A1EJB S1 S1 S 0 1 N N N N N N -17.325 -14.043 -10.283 3.926 -1.962 1.153 S1 A1EJB 54 A1EJB S2 S2 S 0 1 N N N N N N -19.829 -7.695 -12.185 -0.399 3.769 1.278 S2 A1EJB 55 A1EJB H1 H1 H 0 1 N N N N N N -20.438 -13.022 -11.270 1.689 -0.817 0.513 H1 A1EJB 56 A1EJB H10 H2 H 0 1 N N N N N N -23.952 -14.117 -6.105 -2.014 -5.686 -0.921 H10 A1EJB 57 A1EJB H9 H3 H 0 1 N N N N N N -23.609 -15.701 -5.330 -2.188 -5.227 0.786 H9 A1EJB 58 A1EJB H12 H4 H 0 1 N N N N N N -23.148 -14.743 -3.317 -2.252 -2.773 -0.521 H12 A1EJB 59 A1EJB H11 H5 H 0 1 N N N N N N -22.143 -13.459 -4.071 -3.129 -3.843 -1.640 H11 A1EJB 60 A1EJB H13 H6 H 0 1 N N N N N N -24.053 -12.511 -2.828 -4.092 -4.604 0.866 H13 A1EJB 61 A1EJB H14 H7 H 0 1 N N N N N N -25.192 -13.461 -3.841 -3.926 -2.839 1.010 H14 A1EJB 62 A1EJB H15 H8 H 0 1 N N N N N N -23.300 -11.759 -5.397 -5.136 -3.883 -1.521 H15 A1EJB 63 A1EJB H16 H9 H 0 1 N N N N N N -24.441 -10.847 -4.351 -6.122 -4.008 -0.045 H16 A1EJB 64 A1EJB H17 H10 H 0 1 N N N N N N -23.406 -11.168 -7.707 -7.514 0.142 -1.372 H17 A1EJB 65 A1EJB H19 H11 H 0 1 N N N N N N -24.125 -6.787 -10.088 -3.830 3.000 -2.084 H19 A1EJB 66 A1EJB H20 H12 H 0 1 N N N N N N -22.399 -6.575 -11.822 -1.674 3.878 -1.287 H20 A1EJB 67 A1EJB H21 H13 H 0 1 N N N N N N -19.927 -9.344 -9.711 -2.485 2.325 2.603 H21 A1EJB 68 A1EJB H22 H14 H 0 1 N N N N N N -21.685 -9.586 -7.977 -4.622 1.399 1.801 H22 A1EJB 69 A1EJB H23 H15 H 0 1 N N N N N N -21.664 -7.850 -14.105 1.699 4.966 -1.188 H23 A1EJB 70 A1EJB H24 H16 H 0 1 N N N N N N -22.079 -9.581 -13.862 -0.016 5.336 -0.889 H24 A1EJB 71 A1EJB H27 H17 H 0 1 N N N N N N -17.809 -8.747 -14.320 2.802 4.926 -0.203 H27 A1EJB 72 A1EJB H28 H18 H 0 1 N N N N N N -15.529 -9.435 -14.971 5.187 5.295 -0.557 H28 A1EJB 73 A1EJB H3 H19 H 0 1 N N N N N N -19.354 -15.051 -13.106 5.379 0.021 -1.542 H3 A1EJB 74 A1EJB H2 H20 H 0 1 N N N N N N -18.852 -15.989 -11.658 5.449 -1.746 -1.334 H2 A1EJB 75 A1EJB H29 H21 H 0 1 N N N N N N -14.655 -11.630 -14.284 6.746 3.395 -0.649 H29 A1EJB 76 A1EJB H30 H22 H 0 1 N N N N N N -16.065 -13.195 -13.019 5.957 1.111 -0.365 H30 A1EJB 77 A1EJB H31 H23 H 0 1 N N N N N N -21.315 -10.845 -11.876 0.114 1.072 0.467 H31 A1EJB 78 A1EJB H33 H24 H 0 1 N N N N N N -23.888 -11.796 -9.852 -8.267 0.338 1.513 H33 A1EJB 79 A1EJB H32 H25 H 0 1 N N N N N N -24.653 -10.177 -9.991 -9.262 0.621 0.054 H32 A1EJB 80 A1EJB H34 H26 H 0 1 N N N N N N -26.710 -11.111 -10.091 -9.289 -1.717 1.674 H34 A1EJB 81 A1EJB H35 H27 H 0 1 N N N N N N -25.932 -12.730 -10.110 -10.007 -1.558 0.045 H35 A1EJB 82 A1EJB H37 H28 H 0 1 N N N N N N -27.411 -11.411 -7.919 -7.700 -3.111 0.824 H37 A1EJB 83 A1EJB H36 H29 H 0 1 N N N N N N -26.822 -13.105 -8.020 -8.394 -2.923 -0.806 H36 A1EJB 84 A1EJB H38 H30 H 0 1 N N N N N N -19.608 -15.370 -9.028 1.385 -3.121 0.567 H38 A1EJB 85 A1EJB H6 H31 H 0 1 N N N N N N -17.997 -11.432 -9.320 5.490 -3.886 -0.298 H6 A1EJB 86 A1EJB H7 H32 H 0 1 N N N N N N -19.857 -10.572 -7.940 4.847 -5.867 -1.613 H7 A1EJB 87 A1EJB H8 H33 H 0 1 N N N N N N -21.585 -12.120 -7.096 2.474 -6.476 -1.846 H8 A1EJB 88 A1EJB H4 H34 H 0 1 N N N N N N -16.980 -17.624 -14.451 7.954 -1.017 -1.548 H4 A1EJB 89 A1EJB H5 H35 H 0 1 N N N N N N -18.604 -17.576 -13.850 8.720 -0.714 -0.084 H5 A1EJB 90 A1EJB H18 H36 H 0 1 N N N N N N -24.395 -7.424 -7.584 -5.954 1.822 -1.498 H18 A1EJB 91 A1EJB H26 H37 H 0 1 N N N N N N -20.254 -8.258 -17.447 0.635 5.391 -3.564 H26 A1EJB 92 A1EJB H25 H38 H 0 1 N N N N N N -20.134 -7.243 -16.048 0.122 3.994 -4.344 H25 A1EJB 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EJB N6 C25 SING N N 1 A1EJB O10 C25 DOUB N N 2 A1EJB C25 C24 SING N N 3 A1EJB C29 C28 DOUB Y N 4 A1EJB C29 C30 SING Y N 5 A1EJB C24 N5 SING N N 6 A1EJB C28 C27 SING Y N 7 A1EJB C30 C31 DOUB Y N 8 A1EJB N2 C4 SING N N 9 A1EJB O1 C4 DOUB N N 10 A1EJB C27 C32 DOUB Y N 11 A1EJB C27 C26 SING Y N 12 A1EJB C31 C32 SING Y N 13 A1EJB C4 C3 SING N N 14 A1EJB N5 C26 SING N N 15 A1EJB N5 S2 SING N N 16 A1EJB C32 C2 SING Y N 17 A1EJB C26 C33 DOUB Y N 18 A1EJB O8 S2 DOUB N N 19 A1EJB C3 N1 SING N N 20 A1EJB C2 C1 DOUB Y N 21 A1EJB C2 N1 SING N N 22 A1EJB S2 O9 DOUB N N 23 A1EJB S2 C21 SING N N 24 A1EJB C33 C1 SING Y N 25 A1EJB N1 S1 SING N N 26 A1EJB C20 C21 DOUB Y N 27 A1EJB C20 C19 SING Y N 28 A1EJB C21 C22 SING Y N 29 A1EJB O2 S1 DOUB N N 30 A1EJB S1 O3 DOUB N N 31 A1EJB S1 C5 SING N N 32 A1EJB C19 C18 DOUB Y N 33 A1EJB C22 C23 DOUB Y N 34 A1EJB C35 C34 SING N N 35 A1EJB C35 C36 SING N N 36 A1EJB C34 C16 SING N N 37 A1EJB C5 C6 DOUB Y N 38 A1EJB C5 C37 SING Y N 39 A1EJB C18 C23 SING Y N 40 A1EJB C18 N4 SING N N 41 A1EJB C6 C7 SING Y N 42 A1EJB C37 C9 DOUB Y N 43 A1EJB C7 C8 DOUB Y N 44 A1EJB C36 N3 SING N N 45 A1EJB C9 C8 SING Y N 46 A1EJB C9 O4 SING N N 47 A1EJB C16 C17 SING N N 48 A1EJB C16 N3 SING N N 49 A1EJB N4 C17 SING N N 50 A1EJB O4 C10 SING N N 51 A1EJB C17 O7 DOUB N N 52 A1EJB N3 C15 SING N N 53 A1EJB C10 C11 SING N N 54 A1EJB C10 O5 DOUB N N 55 A1EJB C15 O6 DOUB N N 56 A1EJB C15 C14 SING N N 57 A1EJB C11 C12 SING N N 58 A1EJB C14 C13 SING N N 59 A1EJB C12 C13 SING N N 60 A1EJB C1 H1 SING N N 61 A1EJB C11 H10 SING N N 62 A1EJB C11 H9 SING N N 63 A1EJB C12 H12 SING N N 64 A1EJB C12 H11 SING N N 65 A1EJB C13 H13 SING N N 66 A1EJB C13 H14 SING N N 67 A1EJB C14 H15 SING N N 68 A1EJB C14 H16 SING N N 69 A1EJB C16 H17 SING N N 70 A1EJB C19 H19 SING N N 71 A1EJB C20 H20 SING N N 72 A1EJB C22 H21 SING N N 73 A1EJB C23 H22 SING N N 74 A1EJB C24 H23 SING N N 75 A1EJB C24 H24 SING N N 76 A1EJB C28 H27 SING N N 77 A1EJB C29 H28 SING N N 78 A1EJB C3 H3 SING N N 79 A1EJB C3 H2 SING N N 80 A1EJB C30 H29 SING N N 81 A1EJB C31 H30 SING N N 82 A1EJB C33 H31 SING N N 83 A1EJB C34 H33 SING N N 84 A1EJB C34 H32 SING N N 85 A1EJB C35 H34 SING N N 86 A1EJB C35 H35 SING N N 87 A1EJB C36 H37 SING N N 88 A1EJB C36 H36 SING N N 89 A1EJB C37 H38 SING N N 90 A1EJB C6 H6 SING N N 91 A1EJB C7 H7 SING N N 92 A1EJB C8 H8 SING N N 93 A1EJB N2 H4 SING N N 94 A1EJB N2 H5 SING N N 95 A1EJB N4 H18 SING N N 96 A1EJB N6 H26 SING N N 97 A1EJB N6 H25 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EJB InChI InChI 1.06 "InChI=1S/C37H38N6O10S2/c38-33(44)22-42-30-18-19-31(29-10-2-1-9-28(29)30)43(23-34(39)45)55(51,52)27-8-5-7-25(21-27)53-36(47)13-4-3-12-35(46)41-20-6-11-32(41)37(48)40-24-14-16-26(17-15-24)54(42,49)50/h1-2,5,7-10,14-19,21,32H,3-4,6,11-13,20,22-23H2,(H2,38,44)(H2,39,45)(H,40,48)/t32-/m0/s1" A1EJB InChIKey InChI 1.06 TWLTUMVIWMYQNU-YTTGMZPUSA-N A1EJB SMILES_CANONICAL CACTVS 3.385 "NC(=O)CN1c2ccc(N(CC(N)=O)[S](=O)(=O)c3cccc(OC(=O)CCCCC(=O)N4CCC[C@H]4C(=O)Nc5ccc(cc5)[S]1(=O)=O)c3)c6ccccc26" A1EJB SMILES CACTVS 3.385 "NC(=O)CN1c2ccc(N(CC(N)=O)[S](=O)(=O)c3cccc(OC(=O)CCCCC(=O)N4CCC[CH]4C(=O)Nc5ccc(cc5)[S]1(=O)=O)c3)c6ccccc26" A1EJB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3ccc2N(S(=O)(=O)c4cccc(c4)OC(=O)CCCCC(=O)N5CCC[C@H]5C(=O)Nc6ccc(cc6)S(=O)(=O)N3CC(=O)N)CC(=O)N" A1EJB SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3ccc2N(S(=O)(=O)c4cccc(c4)OC(=O)CCCCC(=O)N5CCCC5C(=O)Nc6ccc(cc6)S(=O)(=O)N3CC(=O)N)CC(=O)N" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EJB "Create component" 2025-01-13 PDBC A1EJB "Initial release" 2025-12-31 RCSB #